{
    "bcoid": "GLY_000130",
    "title": "Mouse UniProtKB Xref UniCarbKB",
    "description": "The Mouse UniProtKB Xref UniCarbKB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...",
    "filename": "mouse_protein_xref_unicarbkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Unicarbkb cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8C1C1-1...",
                "protein_xref..."
            ],
            [
                "O09164-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "Q8C1C1-1",
                "protein_xref_unicarbkb",
                "Q8C1C1",
                "UniCarbKB"
            ],
            [
                "O09164-1",
                "protein_xref_unicarbkb",
                "O09164",
                "UniCarbKB"
            ],
            [
                "P55850-1",
                "protein_xref_unicarbkb",
                "P55850",
                "UniCarbKB"
            ],
            [
                "O08537-1",
                "protein_xref_unicarbkb",
                "O08537",
                "UniCarbKB"
            ],
            [
                "P04925-1",
                "protein_xref_unicarbkb",
                "P04925",
                "UniCarbKB"
            ],
            [
                "P35918-1",
                "protein_xref_unicarbkb",
                "P35918",
                "UniCarbKB"
            ],
            [
                "P16675-1",
                "protein_xref_unicarbkb",
                "P16675",
                "UniCarbKB"
            ],
            [
                "Q8VCI0-1",
                "protein_xref_unicarbkb",
                "Q8VCI0",
                "UniCarbKB"
            ],
            [
                "Q9Z1Q4-1",
                "protein_xref_unicarbkb",
                "Q9Z1Q4",
                "UniCarbKB"
            ],
            [
                "P19785-1",
                "protein_xref_unicarbkb",
                "P19785",
                "UniCarbKB"
            ],
            [
                "Q9CPW5-1",
                "protein_xref_unicarbkb",
                "Q9CPW5",
                "UniCarbKB"
            ],
            [
                "Q05769-1",
                "protein_xref_unicarbkb",
                "Q05769",
                "UniCarbKB"
            ],
            [
                "Q61508-1",
                "protein_xref_unicarbkb",
                "Q61508",
                "UniCarbKB"
            ],
            [
                "P18242-1",
                "protein_xref_unicarbkb",
                "P18242",
                "UniCarbKB"
            ],
            [
                "P55849-1",
                "protein_xref_unicarbkb",
                "P55849",
                "UniCarbKB"
            ],
            [
                "Q09163-1",
                "protein_xref_unicarbkb",
                "Q09163",
                "UniCarbKB"
            ],
            [
                "P06797-1",
                "protein_xref_unicarbkb",
                "P06797",
                "UniCarbKB"
            ],
            [
                "P17439-1",
                "protein_xref_unicarbkb",
                "P17439",
                "UniCarbKB"
            ],
            [
                "P11438-1",
                "protein_xref_unicarbkb",
                "P11438",
                "UniCarbKB"
            ],
            [
                "O89023-1",
                "protein_xref_unicarbkb",
                "O89023",
                "UniCarbKB"
            ],
            [
                "Q9Z0L8-1",
                "protein_xref_unicarbkb",
                "Q9Z0L8",
                "UniCarbKB"
            ]
        ]
    },
    "readme": "Name\n   - Mouse UniProtKB Xref UniCarbKB\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - 2019-03-15T16:53:52.791212\n\nModified on\n   - 2022-09-26T08:56:48.474302\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse UniProtKB Xref UniCarbKB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to UniCarbKB database accessions/identifiers. UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n   Keywords\n   - glycoprotein\n   - glycan\n   - UniCarbKB\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to UniCarbKB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n   Output Subdomain\n      Name: mouse_protein_xref_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_xref_unicarbkb.csv\n      Name: mouse_protein_xref_unicarbkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_xref_unicarbkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"21\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"21\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/mouse_protein_xref_unicarbkb.csv"
}