{ "bcoid": "GLY_000124", "title": "Mouse UniProtKB Xref PRO", "description": "The Mouse UniprotKB Xref PRO contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Pro cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_pro", "PR_Q8BH24", "" ], [ "Q8BH27-1", "protein_xref_pro", "PR_Q8BH27", "" ], [ "Q8BH26-1", "protein_xref_pro", "PR_Q8BH26", "" ], [ "Q80WT5-1", "protein_xref_pro", "PR_Q80WT5", "" ], [ "B2RXV4-1", "protein_xref_pro", "PR_B2RXV4", "" ], [ "P03899-1", "protein_xref_pro", "PR_P03899", "" ], [ "O35153-1", "protein_xref_pro", "PR_O35153", "" ], [ "P03893-1", "protein_xref_pro", "PR_P03893", "" ], [ "Q9QYH9-1", "protein_xref_pro", "PR_Q9QYH9", "" ], [ "P52479-1", "protein_xref_pro", "PR_P52479", "" ], [ "P02762-1", "protein_xref_pro", "PR_P02762", "" ], [ "Q9QYH6-1", "protein_xref_pro", "PR_Q9QYH6", "" ], [ "Q08AU9-1", "protein_xref_pro", "PR_Q08AU9", "" ], [ "Q08AU7-1", "protein_xref_pro", "PR_Q08AU7", "" ], [ "Q5EBH1-1", "protein_xref_pro", "PR_Q5EBH1", "" ], [ "Q80YU0-1", "protein_xref_pro", "PR_Q80YU0", "" ], [ "Q5SRT8-1", "protein_xref_pro", "PR_Q5SRT8", "" ], [ "P70414-1", "protein_xref_pro", "PR_P70414", "" ], [ "P70412-1", "protein_xref_pro", "PR_P70412", "" ], [ "P70419-1", "protein_xref_pro", "PR_P70419", "" ], [ "Q9EP78-1", "protein_xref_pro", "PR_Q9EP78", "" ], [ "Q9EP79-1", "protein_xref_pro", "PR_Q9EP79", "" ], [ "Q3URK3-1", "protein_xref_pro", "PR_Q3URK3", "" ], [ "Q9EP72-1", "protein_xref_pro", "PR_Q9EP72", "" ], [ "Q9EP73-1", "protein_xref_pro", "PR_Q9EP73", "" ], [ "Q9EP71-1", "protein_xref_pro", "PR_Q9EP71", "" ], [ "Q9EP75-1", "protein_xref_pro", "PR_Q9EP75", "" ], [ "P53702-1", "protein_xref_pro", "PR_P53702", "" ], [ "O08911-1", "protein_xref_pro", "PR_O08911", "" ], [ "Q80WC9-1", "protein_xref_pro", "PR_Q80WC9", "" ], [ "O08912-1", "protein_xref_pro", "PR_O08912", "" ], [ "O08915-1", "protein_xref_pro", "PR_O08915", "" ], [ "O08914-1", "protein_xref_pro", "PR_O08914", "" ], [ "O08917-1", "protein_xref_pro", "PR_O08917", "" ], [ "Q80WC3-1", "protein_xref_pro", "PR_Q80WC3", "" ], [ "O08918-1", "protein_xref_pro", "PR_O08918", "" ], [ "Q80WC1-1", "protein_xref_pro", "PR_Q80WC1", "" ], [ "Q80WC7-1", "protein_xref_pro", "PR_Q80WC7", "" ], [ "Q9JHY4-1", "protein_xref_pro", "PR_Q9JHY4", "" ], [ "P19070-1", "protein_xref_pro", "PR_P19070", "" ], [ "Q8BYW1-1", "protein_xref_pro", "PR_Q8BYW1", "" ], [ "G5E8Q8-1", "protein_xref_pro", "PR_G5E8Q8", "" ], [ "Q66GT5-1", "protein_xref_pro", "PR_Q66GT5", "" ], [ "P50429-1", "protein_xref_pro", "PR_P50429", "" ], [ "Q8BTJ4-1", "protein_xref_pro", "PR_Q8BTJ4", "" ], [ "P50427-1", "protein_xref_pro", "PR_P50427", "" ], [ "P59708-1", "protein_xref_pro", "PR_P59708", "" ], [ "Q9R1N9-1", "protein_xref_pro", "PR_Q9R1N9", "" ], [ "Q3V3Q4-1", "protein_xref_pro", "PR_Q3V3Q4", "" ], [ "Q3V3Q7-1", "protein_xref_pro", "PR_Q3V3Q7", "" ], [ "Q6T3U4-1", "protein_xref_pro", "PR_Q6T3U4", "" ], [ "Q9D516-1", "protein_xref_pro", "PR_Q9D516", "" ], [ "Q9D517-1", "protein_xref_pro", "PR_Q9D517", "" ], [ "Q9D513-1", "protein_xref_pro", "PR_Q9D513", "" ], [ "Q9D518-1", "protein_xref_pro", "PR_Q9D518", "" ], [ "Q8K2M0-1", "protein_xref_pro", "PR_Q8K2M0", "" ], [ "Q8K2M3-1", "protein_xref_pro", "PR_Q8K2M3", "" ], [ "P21661-1", "protein_xref_pro", "PR_P21661", "" ], [ "D3Z6Q9-1", "protein_xref_pro", "PR_D3Z6Q9", "" ], [ "A2RSY6-1", "protein_xref_pro", "PR_A2RSY6", "" ], [ "Q8CB67-1", "protein_xref_pro", "PR_Q8CB67", "" ], [ "Q8VC03-1", "protein_xref_pro", "PR_Q8VC03", "" ], [ "Q8VC04-1", "protein_xref_pro", "PR_Q8VC04", "" ], [ "P05524-1", "protein_xref_pro", "PR_P05524", "" ], [ "P22727-1", "protein_xref_pro", "PR_P22727", "" ], [ "Q8BGW1-1", "protein_xref_pro", "PR_Q8BGW1", "" ], [ "Q8BGW0-1", "protein_xref_pro", "PR_Q8BGW0", "" ], [ "Q8BGW3-1", "protein_xref_pro", "PR_Q8BGW3", "" ], [ "Q8BGW2-1", "protein_xref_pro", "PR_Q8BGW2", "" ], [ "Q8BGW4-1", "protein_xref_pro", "PR_Q8BGW4", "" ], [ "Q8BGW6-1", "protein_xref_pro", "PR_Q8BGW6", "" ], [ "Q8BGW9-1", "protein_xref_pro", "PR_Q8BGW9", "" ], [ "Q8BGW8-1", "protein_xref_pro", "PR_Q8BGW8", "" ], [ "Q497P3-1", "protein_xref_pro", "PR_Q497P3", "" ], [ "Q3U3I9-1", "protein_xref_pro", "PR_Q3U3I9", "" ], [ "A2AAE1-1", "protein_xref_pro", "PR_A2AAE1", "" ], [ "Q3TNL8-1", "protein_xref_pro", "PR_Q3TNL8", "" ], [ "Q9QZD5-1", "protein_xref_pro", "PR_Q9QZD5", "" ], [ "Q9QZD4-1", "protein_xref_pro", "PR_Q9QZD4", "" ], [ "Q9QZD9-1", "protein_xref_pro", "PR_Q9QZD9", "" ], [ "Q9QZD8-1", "protein_xref_pro", "PR_Q9QZD8", "" ], [ "E9PZM4-1", "protein_xref_pro", "PR_E9PZM4", "" ], [ "Q00977-1", "protein_xref_pro", "PR_Q00977", "" ], [ "Q1HKZ5-1", "protein_xref_pro", "PR_Q1HKZ5", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref PRO\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2019-03-15T16:10:07.474480\n\nModified on\n - 2022-09-26T08:56:48.496178\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniprotKB Xref PRO contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. \n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_pro.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_xref_pro.csv\n Name: mouse_protein_xref_pro.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_xref_pro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"16859\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"16860\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/mouse_protein_xref_pro.csv" }