{ "bcoid": "GLY_000032", "title": "Mouse Protein Alternative Name (UniProtKB)", "description": "The Mouse Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for mouse ...", "filename": "mouse_protein_altnames.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Protein Alternative Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH27-1...", "Epidermal gr..." ], [ "Q8BH26-1...", "Transmembran..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q8BH27-1", "Epidermal growth factor-like protein 5", "EGF-like protein 5", "" ], [ "Q8BH26-1", "Transmembrane protein 251", "", "" ], [ "B2RXV4-1", "Major facilitator superfamily domain containing 7B", "Mfsd7b", "" ], [ "B2RXV4-1", "Feline leukemia virus subgroup C receptor-related protein 1", "Feline leukemia virus subgroup C receptor", "" ], [ "P03899-1", "NADH dehydrogenase subunit 3", "", "" ], [ "O35153-1", "Golgi SNARE with a size of 15 kDa", "GOS-15", "" ], [ "O35153-1", "Golgi SNARE with a size of 15 kDa", "GS15", "" ], [ "O35153-1", "Vesicle transport protein GOS15", "", "" ], [ "P03893-1", "NADH dehydrogenase subunit 2", "", "" ], [ "P52479-1", "Deubiquitinating enzyme 10", "", "" ], [ "P52479-1", "Ubiquitin thioesterase 10", "", "" ], [ "P52479-1", "Ubiquitin-specific-processing protease 10", "", "" ], [ "P02762-1", "Group 1, BS6", "", "" ], [ "P02762-1", "Alpha-2U-globulin", "", "" ], [ "Q9QYH6-1", "Dlxin-1", "", "" ], [ "Q9QYH6-1", "MAGE-D1 antigen", "", "" ], [ "Q9QYH6-1", "Neurotrophin receptor-interacting MAGE homolog", "", "" ], [ "Q5EBH1-1", "Regulator for cell adhesion and polarization enriched in lymphoid tissues", "RAPL", "" ], [ "Q5EBH1-1", "New ras effector 1", "", "" ], [ "Q80YU0-1", "Alpha/beta hydrolase domain-containing protein 16B", "Abhydrolase domain-containing protein 16B", "" ], [ "P70414-1", "Na(+)/Ca(2+)-exchange protein 1", "", "" ], [ "P70414-1", "Solute carrier family 8 member 1", "", "" ], [ "P70412-1", "Integral membrane-associated protein 1", "", "" ], [ "P70419-1", "Polypeptide GalNAc transferase 3", "GalNAc-T3", "" ], [ "P70419-1", "Polypeptide GalNAc transferase 3", "pp-GaNTase 3", "" ], [ "P70419-1", "UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3", "", "" ], [ "P70419-1", "Protein-UDP acetylgalactosaminyltransferase 3", "", "" ], [ "Q9EP78-1", "Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 5", "GST-5", "" ], [ "Q9EP78-1", "N-acetylglucosamine 6-O-sulfotransferase 4", "GlcNAc6ST-4", "" ], [ "Q9EP78-1", "N-acetylglucosamine 6-O-sulfotransferase 4", "Gn6st-4", "" ], [ "Q9EP78-1", "Chondroitin 6-sulfotransferase 2", "C6ST-2", "" ], [ "Q9EP78-1", "Chondroitin 6-sulfotransferase 2", "mC6ST-2", "" ], [ "Q9EP79-1", "Vomeronasal receptor 3", "", "" ], [ "Q9EP79-1", "Pheromone receptor VN3", "", "" ], [ "Q9EP79-1", "Vomeronasal type-1 receptor A7", "", "" ], [ "Q3URK3-1", "CXXC-type zinc finger protein 6", "", "" ], [ "Q3URK3-1", "Ten-eleven translocation 1 gene protein homolog", "", "" ], [ "Q9EP73-1", "B7 homolog 1", "B7-H1", "" ], [ "Q9EP71-1", "Novel retinal pigment epithelial cell protein", "", "" ], [ "Q9EP71-1", "Ankyrin repeat and coiled-coil structure-containing protein", "", "" ], [ "Q9EP71-1", "p125", "", "" ], [ "Q9EP71-1", "Retinoic acid-induced protein 14", "", "" ], [ "Q9EP75-1", "Cytochrome P450-LTB-omega", "", "" ], [ "Q9EP75-1", "Cyp4f-14", "", "" ], [ "Q9EP75-1", "Leukotriene-B4 20-monooxygenase 3", "", "" ], [ "Q9EP75-1", "Cytochrome P450 4F14", "", "" ], [ "P53702-1", "Cytochrome c-type heme lyase", "CCHL", "" ], [ "O08911-1", "Extracellular signal-regulated kinase 6", "ERK-6", "" ], [ "O08911-1", "Mitogen-activated protein kinase p38 gamma", "MAP kinase p38 gamma", "" ], [ "O08911-1", "Stress-activated protein kinase 3", "", "" ], [ "Q80WC9-1", "Protein LYS2 homolog", "", "" ], [ "Q80WC9-1", "Acyl-CoA synthetase family member 4", "", "" ], [ "O08912-1", "Polypeptide GalNAc transferase 1", "GalNAc-T1", "" ], [ "O08912-1", "Polypeptide GalNAc transferase 1", "pp-GaNTase 1", "" ], [ "O08912-1", "Protein-UDP acetylgalactosaminyltransferase 1", "", "" ], [ "O08912-1", "UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1", "", "" ], [ "O08915-1", "Aryl-hydrocarbon receptor-interacting protein", "", "" ], [ "O08914-1", "Oleamide hydrolase 1", "", "" ], [ "O08914-1", "Anandamide amidohydrolase 1", "", "" ], [ "O08914-1", "Fatty acid ester hydrolase", "", "3.1.1.-" ], [ "Q80WC3-1", "Zinc finger protein 469", "", "" ], [ "Q80WC7-1", "Rev/Rex activation domain-binding protein related", "RAB-R", "" ], [ "Q80WC7-1", "HIV-1 Rev-binding protein-like protein", "", "" ], [ "Q9JHY4-1", "Elafin-like protein I", "", "" ], [ "Q9JHY4-1", "Single WAP motif protein 1", "", "" ], [ "P19070-1", "Complement C3d receptor", "", "" ], [ "Q8BYW1-1", "Rho-type GTPase-activating protein 25", "", "" ], [ "G5E8Q8-1", "G-protein coupled receptor 116", "", "" ], [ "Q66GT5-1", "Protein-tyrosine phosphatase mitochondrial 1", "", "3.1.3.48" ], [ "Q66GT5-1", "Protein-tyrosine phosphatase mitochondrial 1", "", "3.1.3.16" ], [ "Q66GT5-1", "Phosphoinositide lipid phosphatase", "", "" ], [ "Q66GT5-1", "PTEN-like phosphatase", "", "" ], [ "P50429-1", "N-acetylgalactosamine-4-sulfatase", "G4S", "" ], [ "Q8BTJ4-1", "Ectonucleotide pyrophosphatase/phosphodiesterase family member 4", "E-NPP 4", "" ], [ "Q8BTJ4-1", "Ectonucleotide pyrophosphatase/phosphodiesterase family member 4", "NPP-4", "" ], [ "Q8BTJ4-1", "AP3A hydrolase", "AP3Aase", "" ], [ "P50427-1", "Arylsulfatase C", "ASC", "" ], [ "P50427-1", "Steroid sulfatase", "", "" ], [ "P50427-1", "Steryl-sulfate sulfohydrolase", "", "" ], [ "P59708-1", "SF3b 14 kDa subunit", "", "" ], [ "P59708-1", "Pre-mRNA branch site protein p14", "", "" ], [ "Q3V3Q4-1", "Interferon-activable protein 204-like", "Ifi-204-like", "" ], [ "Q3V3Q4-1", "Pyrin domain-containing protein 3", "", "" ], [ "Q3V3Q4-1", "Interferon activated gene 208", "", "" ] ] }, "readme": "Name\n - Mouse Protein Alternative Name (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2019-01-23T17:21:05.899575\n\nModified on\n - 2022-09-26T08:48:18.835460\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for mouse [taxid:10090] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_altnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_altnames.csv\n Name: mouse_protein_altnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_altnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"11987\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"23107\"\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"6976\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"345\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/mouse_protein_altnames.csv" }