{
    "object_id": "https://biocomputeobject.org/GLY_000816/v-2.3.1",
    "etag": "b732578e11affc8c384e80c734aaaf4d",
    "spec_version": "1.3.0",
    "provenance_domain": {
        "name": "SARS-CoV2 UniProtKB Xref ViralGlycome",
        "version": "v-2.3.1",
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "created": "",
        "modified": "2023-09-11T22:49:03",
        "contributors": [
            {
                "name": "Jeet Vora",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "jeetvora@gwu.edu"
            },
            {
                "name": "Robel Kahsay",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "rykahsay@gwu.edu"
            },
            {
                "name": "Robel Kahsay",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "rykahsay@gwu.edu"
            },
            {
                "name": "Karina Martinez",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Jingyue Wu",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "jingyue.wu@email.gwu.edu"
            },
            {
                "name": "Jingyue Wu",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "jingyue.wu@email.gwu.edu"
            }
        ]
    },
    "usability_domain": [
        "The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) UniProtKB Xref ViralGlycome contains sarscov2 [taxid:2697049] UniProtKB canonical accessions cross-referenced to ViralGlycome database - https://viral.glycomics.ku.dk.",
        "The ViralGlycome creates visualization of CCG-generated viral O-glycoproteomics datasets and put them in the context of other types of glycosylation, evolutionary conservation, and immune reactivity."
    ],
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Severe acute respiratory syndrome coronavirus 2",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "ViralGlycome cross-references",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "description_domain": {
        "keywords": [
            "ViralGlycome",
            "viral glycosylation viewer",
            "cross-reference",
            "viral O-glycoproteomics datasets"
        ],
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py",
                "version": "",
                "step_number": 1,
                "input_list": [],
                "output_list": [],
                "prerequisite": [],
                "description": "The script loads the UniProtKB canonical accessions that are cross-referenced to ViralGlycome database accessions/identifiers and extracts the data as a csv dataset"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "filename": "sarscov2_protein_xref_viralglycome.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.3.1/compiled/sarscov2_protein_xref_viralglycome.csv"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_protein_xref_viralglycome.csv",
                    "filename": "sarscov2_protein_xref_viralglycome.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_protein_xref_viralglycome.stat.csv",
                    "filename": "sarscov2_protein_xref_viralglycome.stat.csv"
                }
            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {}
    }
}