{
    "object_id": "https://biocomputeobject.org/GLY_000414/v-2.3.1",
    "spec_version": "1.3.0",
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Severe acute respiratory syndrome-related coronavirus",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Binary Interaction",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "name": "SARS-CoV1 Protein Binary Interactions (IntAct)",
        "version": "v-2.3.1",
        "license": "MIT",
        "created": "2020-04-02T22:47:16.534551",
        "modified": "2022-09-26T09:05:56.428686",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Maria Martin",
                "email": "martin@ebi.ac.uk"
            },
            {
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Preethi Vasudev",
                "email": "pvasudev@ebi.ac.uk"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Jingyue Wu",
                "affiliation": "The George Washington University",
                "email": "jingyue.wu@email.gwu.edu",
                "contribution": [
                    "curatedBy"
                ],
                "orcid": ""
            },
            {
                "name": "Jingyue Wu",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "jingyue.wu@email.gwu.edu"
            }
        ],
        "review": []
    },
    "description_domain": {
        "keywords": [
            "Binary Interactions",
            "IntAct",
            "UniProtKB"
        ],
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py",
                "step_number": 0,
                "version": "",
                "input_list": [],
                "output_list": [],
                "prerequisite": [],
                "description": "The script loads the binary interactions data for UniProtKB canonical interactions from the triplestore and extracts it as a dataset in csv format"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "usability_domain": [
        "The SARS coronavirus (SARS-CoV-1) Protein Binary Interaction (IntAct) dataset contains sarscov1 [taxid:10116] binary interaction data for UniProtKB canonical accession from IntAct database. The data is quality filtered by UniProt from IntAct and contains information about the interactors, number of experiments, IntAct Ids etc. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to UniProtKB and GlyGen"
    ],
    "etag": "724ebf352c558ff761a9452ae6712bcc",
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "filename": "uniprot-proteome-sars-coronavirus.nt",
                    "uri": "https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-sars-coronavirus.nt"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov1_protein_binary_interactions.csv",
                    "filename": "sarscov1_protein_binary_interactions.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov1_protein_binary_interactions.stat.csv",
                    "filename": "sarscov1_protein_binary_interactions.stat.csv"
                }
            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {}
    }
}