# All input files from downloads folder used in 2.1 release

/data/shared/glyds/downloads/alliance_genome/2021_01/mouse_disease_genome_alliance.csv
/data/shared/glyds/downloads/alliance_genome/2021_01/rat_disease_genome_alliance.csv
/data/shared/glyds/downloads/atlas_oglcnac/2022_10_20/ambiguous_sites_version_2.0.csv
/data/shared/glyds/downloads/atlas_oglcnac/2022_10_20/unambiguous_sites_version_2.0.csv
/data/shared/glyds/downloads/biomarkerdb/2023_04_13/allbiomarkers-all.csv
/data/shared/glyds/downloads/biomuta/v-5.0/biomuta.csv
/data/shared/glyds/downloads/biomuta/v-5.0/clinical_information.csv
/data/shared/glyds/downloads/biomuta/v-5.0/human_cancer_mutation_literature.csv
/data/shared/glyds/downloads/bioxpress/2021_08/human_cancer_mRNA_expression_per_tissue_glygen.csv
/data/shared/glyds/downloads/bioxpress/2021_08/human_normal_expression_custom_filtered.csv
/data/shared/glyds/downloads/cellosaurus/2020-09-15/cellosaurus.txt
/data/shared/glyds/downloads/chebi/07_16_2021/database_accession.tsv
/data/shared/glyds/downloads/covid_media/03_30_2020/sarscov2_protein_swiss_gn2g2m3_speed2x.mp4
/data/shared/glyds/downloads/covid_media/03_30_2020/sarscov2_protein_swiss_gn2g2m3_speed2x_optimized.gif
/data/shared/glyds/downloads/ebi/2022_05/accession-history-drosophila-melanogaster.tsv
/data/shared/glyds/downloads/ebi/2022_05/accession-history-hepatitis-c-virus-1a.tsv
/data/shared/glyds/downloads/ebi/2022_05/accession-history-hepatitis-c-virus-1b.tsv
/data/shared/glyds/downloads/ebi/2022_05/accession-history-homo-sapiens.tsv
/data/shared/glyds/downloads/ebi/2022_05/accession-history-mus-musculus.tsv
/data/shared/glyds/downloads/ebi/2022_05/accession-history-rattus-norvegicus.tsv
/data/shared/glyds/downloads/ebi/2022_05/accession-history-sars-coronavirus.tsv
/data/shared/glyds/downloads/ebi/2022_05/accession-history-sars-cov-2.tsv
/data/shared/glyds/downloads/ebi/2022_05/dbSNP-homo-sapiens.tsv
/data/shared/glyds/downloads/ebi/2022_05/dbSNP-mus-musculus.tsv
/data/shared/glyds/downloads/ebi/2022_05/dbSNP-rattus-norvegicus.tsv
/data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt
/data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-hepatitis-c-virus-1a.nt
/data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-hepatitis-c-virus-1b.nt
/data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-homo-sapiens.nt
/data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-mus-musculus.nt
/data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-rattus-norvegicus.nt
/data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-sars-coronavirus.nt
/data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-sars-cov-2.nt
/data/shared/glyds/downloads/ebi/2023_01/dbSNP-homo-sapiens.tsv
/data/shared/glyds/downloads/genomics_england/07_16_2021/congenital_disorders_of_glycosylation.tsv
/data/shared/glyds/downloads/glycam_3d/glycan/2022_05_24
/data/shared/glyds/downloads/glycan_dictionary/03_03_2023/glycan_dictionary.csv
/data/shared/glyds/downloads/glycan_list/05_17_2021/glytoucan_allacc.txt
/data/shared/glyds/downloads/glycan_list/05_17_2021/glytoucan_archived.txt
/data/shared/glyds/downloads/glycan_list/05_17_2021/glytoucan_replaced.txt
/data/shared/glyds/downloads/glycogenes/2022_02_16/human_glycogenes.csv
/data/shared/glyds/downloads/glycogenes/2022_02_16/mouse_glycogenes.csv
/data/shared/glyds/downloads/glyconnect/2022_03_14/glyconnect_fruitfly.json
/data/shared/glyds/downloads/glyconnect/2022_03_14/glyconnect_human.json
/data/shared/glyds/downloads/glyconnect/2022_03_14/glyconnect_mouse.json
/data/shared/glyds/downloads/glyconnect/2022_03_14/glyconnect_rat.json
/data/shared/glyds/downloads/glyconnect/2022_03_14/glyconnect_sarscov2.json
/data/shared/glyds/downloads/glycoprotdb/protein_xref_glycoprotdb.csv
/data/shared/glyds/downloads/glycosmos/04_08_2021/glycosmos_gdgdb.csv
/data/shared/glyds/downloads/glycosmos/04_08_2021/graph-1/ggdonto.ttl
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/allglycan.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/allmotifaligns.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/allmotifs.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/bcsdb.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/byonic_glygen_human_nlinked.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/carbbank.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/cfg.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/classification.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/glycandata.rdf.gz
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/glycan_properties.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/glycoepitope.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/glyconnect.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/glycosciencesde.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/glycosmos.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/glygen_retired_accessions.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/gnome.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/images.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/kegg.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/matrixdb.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/monocomp.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/monocounts.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/names.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/pbch.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/pdb.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/pubs.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/species_expanded.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/subsumption.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/unicarbdb.tsv
/data/shared/glyds/downloads/glytoucan/gtc_12_20_2022/export/unicarbkb.tsv
/data/shared/glyds/downloads/gnome/10Feb2023/GlycoTree_NGlycans.valid-accessions.txt
/data/shared/glyds/downloads/gnome/10Feb2023/GlycoTree_OGlycans.valid-accessions.txt
/data/shared/glyds/downloads/gnome/10Feb2023/GlyGen_NGlycans.valid-accessions.txt
/data/shared/glyds/downloads/gnome/10Feb2023/GlyGen_OGlycans.valid-accessions.txt
/data/shared/glyds/downloads/gnome/10Feb2023/GlyGen.valid-accessions.txt
/data/shared/glyds/downloads/gptwiki/gpt_2021_06_23_14_51_10/glycosites.csv
/data/shared/glyds/downloads/harvard/T_Cell_O-GlcNAc_sites_CWoo_8-23-18.csv
/data/shared/glyds/downloads/iptmnet/2022_02/ptm.txt
/data/shared/glyds/downloads/lit_min/2021_04_08/proteoform_glycosylation_sites_literature_mining.csv
/data/shared/glyds/downloads/matrixdb/2019_08_07/matrixdb_CORE.csv
/data/shared/glyds/downloads/mcw_oglcnac/2022_07_29/fruitfly_o-glcnacome_mcw.csv
/data/shared/glyds/downloads/mcw_oglcnac/2022_07_29/human_o-glcnacome_mcw.csv
/data/shared/glyds/downloads/mcw_oglcnac/2022_07_29/mouse_o-glcnacome_mcw.csv
/data/shared/glyds/downloads/mcw_oglcnac/2022_07_29/rat_o-glcnacome_mcw.csv
/data/shared/glyds/downloads/mgi/2022_07_07/mgi_homologs.csv
/data/shared/glyds/downloads/mondo/2022_11_07/mondo.json
/data/shared/glyds/downloads/ncbi/refseq/2022_10/refseq_protein_all_10090.gpff
/data/shared/glyds/downloads/ncbi/refseq/2022_10/refseq_protein_all_10116.gpff
/data/shared/glyds/downloads/ncbi/refseq/2022_10/refseq_protein_all_7227.gpff
/data/shared/glyds/downloads/ncbi/refseq/2022_10/refseq_protein_all_9606.gpff
/data/shared/glyds/downloads/ncbi/refseq/2022_10/refseq_protein_all_viral.gpff
/data/shared/glyds/downloads/ncfg/09_01_2020/glycan_evidence_ncfg.csv
/data/shared/glyds/downloads/ohsu/human_glyco-phenotype_disease_curation_list_v12-18-74.csv
/data/shared/glyds/downloads/oma/2022_07_07/fruitfly_human_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/fruitfly_mouse_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/fruitfly_rat_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/human_fruitfly_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/human_mouse_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/human_rat_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/mouse_fruitfly_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/mouse_human_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/mouse_rat_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/rat_fruitfly_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/rat_human_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/oma/2022_07_07/rat_mouse_oma_orthologs_july2022.csv
/data/shared/glyds/downloads/pdb/download_2018_10_23/N-linked-ARG-details
/data/shared/glyds/downloads/pdb/download_2018_10_23/N-linked-ASN-details
/data/shared/glyds/downloads/pdb/download_2018_10_23/O-linked-ASP-details
/data/shared/glyds/downloads/pdb/download_2018_10_23/O-linked-GLU-details
/data/shared/glyds/downloads/pdb/download_2018_10_23/O-linked-SER-details
/data/shared/glyds/downloads/pdb/download_2018_10_23/O-linked-THR-details
/data/shared/glyds/downloads/pdb/download_2018_10_23/O-linked-TYR-details
/data/shared/glyds/downloads/pdb/download_2018_10_23/pdb_chain_uniprot.csv
/data/shared/glyds/downloads/pharos/03_2020/batch.10.json
/data/shared/glyds/downloads/pharos/03_2020/batch.11.json
/data/shared/glyds/downloads/pharos/03_2020/batch.12.json
/data/shared/glyds/downloads/pharos/03_2020/batch.13.json
/data/shared/glyds/downloads/pharos/03_2020/batch.14.json
/data/shared/glyds/downloads/pharos/03_2020/batch.15.json
/data/shared/glyds/downloads/pharos/03_2020/batch.16.json
/data/shared/glyds/downloads/pharos/03_2020/batch.17.json
/data/shared/glyds/downloads/pharos/03_2020/batch.18.json
/data/shared/glyds/downloads/pharos/03_2020/batch.19.json
/data/shared/glyds/downloads/pharos/03_2020/batch.1.json
/data/shared/glyds/downloads/pharos/03_2020/batch.20.json
/data/shared/glyds/downloads/pharos/03_2020/batch.21.json
/data/shared/glyds/downloads/pharos/03_2020/batch.2.json
/data/shared/glyds/downloads/pharos/03_2020/batch.3.json
/data/shared/glyds/downloads/pharos/03_2020/batch.4.json
/data/shared/glyds/downloads/pharos/03_2020/batch.5.json
/data/shared/glyds/downloads/pharos/03_2020/batch.6.json
/data/shared/glyds/downloads/pharos/03_2020/batch.7.json
/data/shared/glyds/downloads/pharos/03_2020/batch.8.json
/data/shared/glyds/downloads/pharos/03_2020/batch.9.json
/data/shared/glyds/downloads/pro/pro_08_28_2020/GlyGen_table_to_PRO.obo
/data/shared/glyds/downloads/prosite/prosite.dat
/data/shared/glyds/downloads/reactome/04_08_2021/ChEBI2Reactome_PE_Pathway.csv
/data/shared/glyds/downloads/sandbox/12_20_2022/accessionlist.csv
/data/shared/glyds/downloads/sandbox/12_20_2022/allPaths.json
/data/shared/glyds/downloads/sandbox/12_20_2022/glycotree_annotated_glycans.tsv
/data/shared/glyds/downloads/ucsc/gtf/Drosophila_melanogaster.BDGP6.32.104.gtf
/data/shared/glyds/downloads/ucsc/gtf/Homo_sapiens.GRCh38.95.gtf
/data/shared/glyds/downloads/ucsc/gtf/Mus_musculus.GRCm38.95.gtf
/data/shared/glyds/downloads/ucsc/gtf/Rattus_norvegicus.Rnor_6.0.95.gtf
/data/shared/glyds/downloads/unicarbkb/01_11_2022/fuzzy_legacy_cph_start_end_positions.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/fuzzy_legacy_human_proteoform_glycosylation_sites_unicarbkb_qin_isoforms.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/fuzzy_legacy_qin_oglanac.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/fuzzy_simplecell_all_glygen_qc.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_33064451_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_33167210_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_33806155_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_34004174_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_34106099_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_legacy_cph_single_positions.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_legacy_dbogap_dbogap2_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_legacy_human_mouse_rat_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_legacy_larsson_xyl.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_legacy_reis_gastric_ags.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_legacy_sarscov2_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/known_unicarbkb_glycomics_study.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/mixed_34089345_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/unknown_20131323_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/unknown_33993882_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/unknown_34083726_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/unknown_34191522_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/unknown_34327564_glygen.csv
/data/shared/glyds/downloads/unicarbkb/01_11_2022/unknown_legacy_human_proteoform_glycosylation_sites_unicarbkb_ogalnac_data.csv