{ "bcoid": "GLY_000804", "title": "Yeast Proteoform Phosphorylation Citations (UniProtKB)", "description": "", "filename": "yeast_proteoform_citations_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Phosphorylation Citations UniProtKB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P38628-1...", "Large-scale ..." ], [ "Q03262-1...", "Quantitative..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P38628-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P38628" ], [ "Q03262-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "Q03262" ], [ "P37012-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P37012" ], [ "P37012-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P37012" ], [ "P11986-1", "Phosphorylation regulates myo-inositol-3-phosphate synthase: a novel regulatory mechanism of inositol biosynthesis.", "The Journal of biological chemistry", "2013 Sep 13", "Deranieh RM, He Q, Caruso JA, Greenberg ML", "protein_xref_pubmed", "23902760", "protein_xref_uniprotkb", "P11986" ], [ "P04807-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P04807" ], [ "P04807-1", "Autophosphorylation-inactivation site of hexokinase 2 in Saccharomyces cerevisiae.", "Biochemistry", "1997-02-25", "Heidrich K, Otto A, Behlke J, Rush J, Wenzel K W, Kriegel T", "protein_xref_pubmed", "9047292", "protein_xref_uniprotkb", "P04807" ], [ "P14540-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P14540" ], [ "P33401-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P33401" ], [ "P33401-1", "A 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phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "O14467" ], [ "O14467-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "O14467" ], [ "O14467-1", "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-02-13", "Chi An, Huttenhower Curtis, Geer Lewis Y, Coon Joshua J, Syka John E P, Bai Dina L, Shabanowitz Jeffrey, Burke Daniel J, Troyanskaya Olga G, Hunt Donald F", "protein_xref_pubmed", "17287358", "protein_xref_uniprotkb", "O14467" ], [ "O14467-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "O14467" ], [ "O14467-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "O14467" ], [ "Q02959-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q02959" ], [ "Q02959-1", "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-02-13", "Chi An, Huttenhower Curtis, Geer Lewis Y, Coon Joshua J, Syka John E P, Bai Dina L, Shabanowitz Jeffrey, Burke Daniel J, Troyanskaya Olga G, Hunt Donald F", "protein_xref_pubmed", "17287358", "protein_xref_uniprotkb", "Q02959" ], [ "Q02725-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q02725" ], [ "P53252-1", "Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP 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analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P53252" ], [ "P53252-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "P53252" ], [ "P07278-1", "The rapamycin-sensitive phosphoproteome reveals that TOR controls protein kinase A toward some but not all substrates.", "Molecular biology of the cell", "2010-10-01", "Soulard Alexandre, Cremonesi Alessio, Moes Suzette, Sch\u00fctz Fr\u00e9d\u00e9ric, Jen\u00f6 Paul, Hall Michael N", "protein_xref_pubmed", "20702584", "protein_xref_uniprotkb", "P07278" ], [ "P27692-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P27692" ], [ "P38845-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38845" ], [ "Q04279-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q04279" ], [ "P11710-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P11710" ], [ "Q07825-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q07825" ], [ "Q07825-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q07825" ], [ "P53273-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P53273" ], [ "P53551-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P53551" ], [ "P54791-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P54791" ], [ "P36145-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P36145" ], [ "P47069-1", "Phosphorylation of luminal region of the SUN-domain protein Mps3 promotes nuclear envelope localization during meiosis.", "eLife", "2021-09-29", "Prasada Rao Hanumanthu Bd, Sato Takeshi, Challa Kiran, Fujita Yurika, Shinohara Miki, Shinohara Akira", "protein_xref_pubmed", "34586062", "protein_xref_uniprotkb", "P47069" ], [ "P34216-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P34216" ], [ "Q04279-1", "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-02-13", "Chi An, Huttenhower Curtis, Geer Lewis Y, Coon Joshua J, Syka John E P, Bai Dina L, Shabanowitz Jeffrey, Burke Daniel J, Troyanskaya Olga G, Hunt Donald F", "protein_xref_pubmed", "17287358", "protein_xref_uniprotkb", "Q04279" ], [ "P32458-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "P32458" ], [ "Q12221-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q12221" ], [ "Q07084-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q07084" ], [ "Q07084-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q07084" ], [ "P30665-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P30665" ], [ "Q12246-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q12246" ], [ "Q12246-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "Q12246" ], [ "P48415-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P48415" ], [ "P00942-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P00942" ], [ "P00942-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P00942" ], [ "Q08641-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q08641" ], [ "Q08641-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q08641" ], [ "Q08641-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "Q08641" ], [ "P38132-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38132" ], [ "P38041-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38041" ], [ "P04821-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P04821" ], [ "P38274-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P38274" ], [ "Q04225-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q04225" ], [ "P38165-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P38165" ], [ "P38165-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38165" ], [ "P34237-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P34237" ], [ "P34237-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P34237" ], [ "P38079-1", "Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase.", "Molecular & cellular proteomics : MCP", "2007-11", "Reinders J\u00f6rg, Wagner Karina, Zahedi Rene P, Stojanovski Diana, Eyrich Beate, van der Laan Martin, Rehling Peter, Sickmann Albert, Pfanner Nikolaus, Meisinger Chris", "protein_xref_pubmed", "17761666", "protein_xref_uniprotkb", "P38079" ], [ "P38079-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P38079" ], [ "P38079-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38079" ], [ "P14682-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P14682" ], [ "P38840-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P38840" ], [ "Q12068-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q12068" ], [ "P11075-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P11075" ], [ "P11075-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P11075" ], [ "P11075-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "P11075" ], [ "P53312-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P53312" ], [ "P32047-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P32047" ], [ "Q06151-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q06151" ], [ "P48566-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P48566" ], [ "P25567-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P25567" ], [ "P0CX35-1", "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-02-13", "Chi An, Huttenhower Curtis, Geer Lewis Y, Coon Joshua J, Syka John E P, Bai Dina L, Shabanowitz Jeffrey, Burke Daniel J, Troyanskaya Olga G, Hunt Donald F", "protein_xref_pubmed", "17287358", "protein_xref_uniprotkb", "P0CX35" ], [ "P38266-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P38266" ], [ "P38266-1", "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-02-13", "Chi An, Huttenhower Curtis, Geer Lewis Y, Coon Joshua J, Syka John E P, Bai Dina L, Shabanowitz Jeffrey, Burke Daniel J, Troyanskaya Olga G, Hunt Donald F", "protein_xref_pubmed", "17287358", "protein_xref_uniprotkb", "P38266" ], [ "Q03497-1", "Accurate quantitation of protein expression and site-specific phosphorylation.", "Proceedings of the National Academy of Sciences of the United States of America", "1999-06-08", "Oda Y, Huang K, Cross F R, Cowburn D, Chait B T", "protein_xref_pubmed", "10359756", "protein_xref_uniprotkb", "Q03497" ], [ "Q08886-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q08886" ], [ "Q08886-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q08886" ] ] }, "readme": "Name\n - Yeast Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2022-09-02T13:32:35.505543\n\nModified on\n - 2023-09-11T20:41:40\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n - Phosphorylation\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: yeast_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_proteoform_phosphorylation_sites_uniprotkb.csv\n Output Subdomain\n Name: yeast_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n Name: yeast_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1937\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"74\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"35\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"73\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"74\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"74\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1937\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/yeast_proteoform_citations_phosphorylation_sites_uniprotkb.csv" }