{ "bcoid": "GLY_000786", "title": "Yeast UniProtKB Xref KEGG PATHWAY", "description": "The Yeast UniProtKB Xref KEGG PATHWAY contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced ...", "filename": "yeast_protein_xref_kegg.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Kegg Pathway cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30619-1...", "protein_xref..." ], [ "P39972-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30619-1", "protein_xref_kegg", "sce:YDR164C", "" ], [ "P39972-1", "protein_xref_kegg", "sce:YEL075C", "" ], [ "P39970-1", "protein_xref_kegg", "sce:YER045C", "" ], [ "P39971-1", "protein_xref_kegg", "sce:YEL076C", "" ], [ "P39976-1", "protein_xref_kegg", "sce:YEL071W", "" ], [ "P39977-1", "protein_xref_kegg", "sce:YEL068C", "" ], [ "P39974-1", "protein_xref_kegg", "sce:YEL073C", "" ], [ "P39975-1", "protein_xref_kegg", "sce:YEL072W", "" ], [ "P39978-1", "protein_xref_kegg", "sce:YEL067C", "" ], [ "P39979-1", "protein_xref_kegg", "sce:YEL066W", "" ], [ "Q07959-1", "protein_xref_kegg", "sce:YLR023C", "" ], [ "P0CX69-1", "protein_xref_kegg", "sce:YDR316W-A", "" ], [ "P0CX69-1", "protein_xref_kegg", "sce:YER159C-A", "" ], [ "P0CX69-1", "protein_xref_kegg", "sce:YGR161C-C", "" ], [ "P0CX69-1", "protein_xref_kegg", "sce:YMR051C", "" ], [ "P25379-1", "protein_xref_kegg", "sce:YCL064C", "" ], [ "P25378-1", "protein_xref_kegg", "sce:YCR027C", "" ], [ "P17121-1", "protein_xref_kegg", "sce:YDR389W", "" ], [ "P25374-1", "protein_xref_kegg", "sce:YCL017C", "" ], [ "P17123-1", "protein_xref_kegg", "sce:YHR152W", "" ], [ "P17122-1", "protein_xref_kegg", "sce:YHR153C", "" ], [ "P25371-1", "protein_xref_kegg", "sce:YCR011C", "" ], [ "P25370-1", "protein_xref_kegg", "sce:YCL036W", "" ], [ "P25373-1", "protein_xref_kegg", "sce:YCL035C", "" ], [ "P25372-1", "protein_xref_kegg", "sce:YCR083W", "" ], [ "Q06568-1", "protein_xref_kegg", "sce:YLR254C", "" ], [ "Q03049-1", "protein_xref_kegg", "sce:YDR541C", "" ], [ "Q06567-1", "protein_xref_kegg", "sce:YLR253W", "" ], [ "Q06563-1", "protein_xref_kegg", "sce:YLR251W", "" ], [ "Q00539-1", "protein_xref_kegg", "sce:YHR086W", "" ], [ "Q07748-1", "protein_xref_kegg", "sce:YDL244W", "" ], [ "Q07963-1", "protein_xref_kegg", "sce:YLR024C", "" ], [ "Q07967-1", "protein_xref_kegg", "sce:YLR030W", "" ], [ "Q00246-1", "protein_xref_kegg", "sce:YKR055W", "" ], [ "Q00245-1", "protein_xref_kegg", "sce:YIL118W", "" ], [ "P0CX61-1", "protein_xref_kegg", "sce:YFL002W-B", "" ], [ "P0CX61-1", "protein_xref_kegg", "sce:YGR161W-A", "" ], [ "P40422-1", "protein_xref_kegg", "sce:YHR143W-A", "" ], [ "P0CX62-1", "protein_xref_kegg", "sce:YFL002W-B", "" ], [ "P0CX62-1", "protein_xref_kegg", "sce:YGR161W-A", "" ], [ "P0CX64-1", "protein_xref_kegg", "sce:YFL002W-A", "" ], [ "P0CX64-1", "protein_xref_kegg", "sce:YGR161W-B", "" ], [ "P0CX67-1", "protein_xref_kegg", "sce:YDR316W-A", "" ], [ "P0CX67-1", "protein_xref_kegg", "sce:YER159C-A", "" ], [ "P0CX67-1", "protein_xref_kegg", "sce:YGR161C-C", "" ], [ "P0CX67-1", "protein_xref_kegg", "sce:YMR051C", "" ], [ "P18494-1", "protein_xref_kegg", "sce:YER040W", "" ], [ "P18496-1", "protein_xref_kegg", "sce:YLR393W", "" ], [ "Q03441-1", "protein_xref_kegg", "sce:YDL001W", "" ], [ "Q08748-1", "protein_xref_kegg", "sce:YOR296W", "" ], [ "Q08749-1", "protein_xref_kegg", "sce:YOR297C", "" ], [ "Q08746-1", "protein_xref_kegg", "sce:YOR294W", "" ], [ "Q08747-1", "protein_xref_kegg", "sce:YOR295W", "" ], [ "Q08745-1", "protein_xref_kegg", "sce:YOR293W", "" ], [ "Q08742-1", "protein_xref_kegg", "sce:YOR286W", "" ], [ "Q08743-1", "protein_xref_kegg", "sce:YOR292C", "" ], [ "P32915-1", "protein_xref_kegg", "sce:YLR378C", "" ], [ "P32914-1", "protein_xref_kegg", "sce:YGR063C", "" ], [ "P32917-1", "protein_xref_kegg", "sce:YDR103W", "" ], [ "P32916-1", "protein_xref_kegg", "sce:YDR292C", "" ], [ "P32911-1", "protein_xref_kegg", "sce:YNL244C", "" ], [ "P32910-1", "protein_xref_kegg", "sce:YNR003C", "" ], [ "P32913-1", "protein_xref_kegg", "sce:YOR132W", "" ], [ "P32912-1", "protein_xref_kegg", "sce:YGL212W", "" ], [ "Q04438-1", "protein_xref_kegg", "sce:YMR107W", "" ], [ "Q04439-1", "protein_xref_kegg", "sce:YMR109W", "" ], [ "Q04430-1", "protein_xref_kegg", "sce:YDR531W", "" ], [ "Q04431-1", "protein_xref_kegg", "sce:YDR532C", "" ], [ "Q04432-1", "protein_xref_kegg", "sce:YDR533C", "" ], [ "Q04433-1", "protein_xref_kegg", "sce:YDR534C", "" ], [ "Q04437-1", "protein_xref_kegg", "sce:YMR106C", "" ], [ "P00546-1", "protein_xref_kegg", "sce:YBR160W", "" ], [ "P04385-1", "protein_xref_kegg", "sce:YBR020W", "" ], [ "P04387-1", "protein_xref_kegg", "sce:YML051W", "" ], [ "P04386-1", "protein_xref_kegg", "sce:YPL248C", "" ], [ "Q08299-1", "protein_xref_kegg", "sce:YOL158C", "" ], [ "Q08562-1", "protein_xref_kegg", "sce:YOR191W", "" ], [ "Q08560-1", "protein_xref_kegg", "sce:YOR186W", "" ], [ "Q08561-1", "protein_xref_kegg", "sce:YOR189W", "" ], [ "P25377-1", "protein_xref_kegg", "sce:YCR105W", "" ], [ "P25376-1", "protein_xref_kegg", "sce:YCL025C", "" ], [ "P32474-1", "protein_xref_kegg", "sce:YDR518W", "" ], [ "P09007-1", "protein_xref_kegg", "sce:YCR018C", "" ], [ "P04037-1", "protein_xref_kegg", "sce:YGL187C", "" ] ] }, "readme": "Name\n - Yeast UniProtKB Xref KEGG PATHWAY\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2022-08-31T13:17:32.978920\n\nModified on\n - 2023-09-11T20:23:35\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast UniProtKB Xref KEGG PATHWAY contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced to KEGG PATHWAY database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks.\n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - KEGG Pathway\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to KEGG PATHWAY database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_xref_kegg.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_xref_kegg.csv\n Name: yeast_protein_xref_kegg.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_xref_kegg.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"5912\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"5910\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/yeast_protein_xref_kegg.csv" }