{
    "bcoid": "GLY_000775",
    "title": "Yeast Protein Submitted Names (UniProtKB)",
    "description": "The Yeast Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for yeast [taxid:559292] ...",
    "filename": "yeast_protein_submittednames.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Submitted Names"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [],
        "headers": [
            "uniprotkb_ca...",
            "submitted_na..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "submitted_name_full"
                },
                {
                    "type": "string",
                    "label": "submitted_name_short"
                },
                {
                    "type": "string",
                    "label": "ec_name"
                }
            ]
        ]
    },
    "readme": "Name\n   - Yeast Protein Submitted Names (UniProtKB)\n\nVersion\n   - v-2.2.1\n\nCreated on\n  - 2022-08-31T11:11:10.067141\n\nModified on\n   - 2023-09-11T20:17:00\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for yeast [taxid:559292] UniProtKB/TrEMBL proteins accessions. In UniProt, UniProtKB/TrEMBL entries usually have 'Submitted name' which may later be improved by automatic annotation procedures but if not, it remains as provided by the submitter until the entry is manually annotated and integrated to UniProtKB/Swiss-Prot. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein submitted name\n   - protein name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB submitted names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/extract-from-endpoint.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_07_11/uniprot-proteome-saccharomyces-cerevisiae.nt\n   Output Subdomain\n      Name: yeast_protein_submittednames.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_submittednames.csv\n      Name: yeast_protein_submittednames.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_submittednames.stat.csv\n\nFields",
    "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/yeast_protein_submittednames.csv"
}