{ "bcoid": "GLY_000761", "title": "Yeast NCBI Protein Linkouts", "description": "The Yeast NCBI Protein Linkouts contains yeast [taxid:559292] NCBI RefSeq accessions with their corresponding ...", "filename": "yeast_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "NCBI Gene Linkouts" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "NP_010448", "https://glygen.org/protein/P30619", "", "", "", "" ], [ "10227", "Protein", "NP_010839", "https://glygen.org/protein/P39972", "", "", "", "" ], [ "10227", "Protein", "NP_010964", "https://glygen.org/protein/P39970", "", "", "", "" ], [ "10227", "Protein", "NP_010837", "https://glygen.org/protein/P39971", "", "", "", "" ], [ "10227", "Protein", "NP_010843", "https://glygen.org/protein/P39976", "", "", "", "" ], [ "10227", "Protein", "NP_001257672", "https://glygen.org/protein/P39977", "", "", "", "" ], [ "10227", "Protein", "NP_010841", "https://glygen.org/protein/P39974", "", "", "", "" ], [ "10227", "Protein", "NP_010842", "https://glygen.org/protein/P39975", "", "", "", "" ], [ "10227", "Protein", "NP_010847", "https://glygen.org/protein/P39978", "", "", "", "" ], [ "10227", "Protein", "NP_010848", "https://glygen.org/protein/P39979", "", "", "", "" ], [ "10227", "Protein", "NP_013123", "https://glygen.org/protein/Q07959", "", "", "", "" ], [ "10227", "Protein", "NP_013766", "https://glygen.org/protein/P0CX69", "", "", "", "" ], [ "10227", "Protein", "NP_001018030", "https://glygen.org/protein/P25379", "", "", "", "" ], [ "10227", "Protein", "NP_009956", "https://glygen.org/protein/P25378", "", "", "", "" ], [ "10227", "Protein", "NP_010677", "https://glygen.org/protein/P17121", "", "", "", "" ], [ "10227", "Protein", "NP_009912", "https://glygen.org/protein/P25374", "", "", "", "" ], [ "10227", "Protein", "NP_012022", "https://glygen.org/protein/P17123", "", "", "", "" ], [ "10227", "Protein", "NP_012023", "https://glygen.org/protein/P17122", "", "", "", "" ], [ "10227", "Protein", "NP_009937", "https://glygen.org/protein/P25371", "", "", "", "" ], [ "10227", "Protein", "NP_009894", "https://glygen.org/protein/P25370", "", "", "", "" ], [ "10227", "Protein", "NP_009895", "https://glygen.org/protein/P25373", "", "", "", "" ], [ "10227", "Protein", "NP_010006", "https://glygen.org/protein/P25372", "", "", "", "" ], [ "10227", "Protein", "NP_013355", "https://glygen.org/protein/Q06568", "", "", "", "" ], [ "10227", "Protein", "NP_010830", "https://glygen.org/protein/Q03049", "", "", "", "" ], [ "10227", "Protein", "NP_013354", "https://glygen.org/protein/Q06567", "", "", "", "" ], [ "10227", "Protein", "NP_013352", "https://glygen.org/protein/Q06563", "", "", "", "" ], [ "10227", "Protein", "NP_011954", "https://glygen.org/protein/Q00539", "", "", "", "" ], [ "10227", "Protein", "NP_010037", "https://glygen.org/protein/Q07748", "", "", "", "" ], [ "10227", "Protein", "NP_013124", "https://glygen.org/protein/Q07963", "", "", "", "" ], [ "10227", "Protein", "NP_013130", "https://glygen.org/protein/Q07967", "", "", "", "" ], [ "10227", "Protein", "NP_012981", "https://glygen.org/protein/Q00246", "", "", "", "" ], [ "10227", "Protein", "NP_012148", "https://glygen.org/protein/Q00245", "", "", "", "" ], [ "10227", "Protein", "NP_058157", "https://glygen.org/protein/P0CX61", "", "", "", "" ], [ "10227", "Protein", "NP_012013", "https://glygen.org/protein/P40422", "", "", "", "" ], [ "10227", "Protein", "NP_058163", "https://glygen.org/protein/P0CX64", "", "", "", "" ], [ "10227", "Protein", "NP_010958", "https://glygen.org/protein/P18494", "", "", "", "" ], [ "10227", "Protein", "NP_013497", "https://glygen.org/protein/P18496", "", "", "", "" ], [ "10227", "Protein", "NP_010283", "https://glygen.org/protein/Q03441", "", "", "", "" ], [ "10227", "Protein", "NP_014939", "https://glygen.org/protein/Q08748", "", "", "", "" ], [ "10227", "Protein", "NP_014940", "https://glygen.org/protein/Q08749", "", "", "", "" ], [ "10227", "Protein", "NP_014937", "https://glygen.org/protein/Q08746", "", "", "", "" ], [ "10227", "Protein", "NP_014938", "https://glygen.org/protein/Q08747", "", "", "", "" ], [ "10227", "Protein", "NP_014936", "https://glygen.org/protein/Q08745", "", "", "", "" ], [ "10227", "Protein", "NP_014929", "https://glygen.org/protein/Q08742", "", "", "", "" ], [ "10227", "Protein", "NP_014935", "https://glygen.org/protein/Q08743", "", "", "", "" ], [ "10227", "Protein", "NP_013482", "https://glygen.org/protein/P32915", "", "", "", "" ], [ "10227", "Protein", "NP_011577", "https://glygen.org/protein/P32914", "", "", "", "" ], [ "10227", "Protein", "NP_010388", "https://glygen.org/protein/P32917", "", "", "", "" ], [ "10227", "Protein", "NP_010578", "https://glygen.org/protein/P32916", "", "", "", "" ], [ "10227", "Protein", "NP_014155", "https://glygen.org/protein/P32911", "", "", "", "" ], [ "10227", "Protein", "NP_014400", "https://glygen.org/protein/P32910", "", "", "", "" ], [ "10227", "Protein", "NP_014775", "https://glygen.org/protein/P32913", "", "", "", "" ], [ "10227", "Protein", "NP_011303", "https://glygen.org/protein/P32912", "", "", "", "" ], [ "10227", "Protein", "NP_013825", "https://glygen.org/protein/Q04438", "", "", "", "" ], [ "10227", "Protein", "NP_013827", "https://glygen.org/protein/Q04439", "", "", "", "" ], [ "10227", "Protein", "NP_010820", "https://glygen.org/protein/Q04430", "", "", "", "" ], [ "10227", "Protein", "NP_010821", "https://glygen.org/protein/Q04431", "", "", "", "" ], [ "10227", "Protein", "NP_010822", "https://glygen.org/protein/Q04432", "", "", "", "" ], [ "10227", "Protein", "NP_010823", "https://glygen.org/protein/Q04433", "", "", "", "" ], [ "10227", "Protein", "NP_013824", "https://glygen.org/protein/Q04437", "", "", "", "" ], [ "10227", "Protein", "NP_009718", "https://glygen.org/protein/P00546", "", "", "", "" ], [ "10227", "Protein", "NP_009576", "https://glygen.org/protein/P04385", "", "", "", "" ], [ "10227", "Protein", "NP_013661", "https://glygen.org/protein/P04387", "", "", "", "" ], [ "10227", "Protein", "NP_015076", "https://glygen.org/protein/P04386", "", "", "", "" ], [ "10227", "Protein", "NP_014484", "https://glygen.org/protein/Q08299", "", "", "", "" ], [ "10227", "Protein", "NP_014834", "https://glygen.org/protein/Q08562", "", "", "", "" ], [ "10227", "Protein", "NP_014829", "https://glygen.org/protein/Q08560", "", "", "", "" ], [ "10227", "Protein", "NP_014832", "https://glygen.org/protein/Q08561", "", "", "", "" ], [ "10227", "Protein", "NP_010030", "https://glygen.org/protein/P25377", "", "", "", "" ], [ "10227", "Protein", "NP_009905", "https://glygen.org/protein/P25376", "", "", "", "" ], [ "10227", "Protein", "NP_010806", "https://glygen.org/protein/P32474", "", "", "", "" ], [ "10227", "Protein", "NP_009944", "https://glygen.org/protein/P09007", "", "", "", "" ], [ "10227", "Protein", "NP_011328", "https://glygen.org/protein/P04037", "", "", "", "" ], [ "10227", "Protein", "NP_013499", "https://glygen.org/protein/P04039", "", "", "", "" ], [ "10227", "Protein", "NP_013328", "https://glygen.org/protein/Q05955", "", "", "", "" ], [ "10227", "Protein", "NP_012104", "https://glygen.org/protein/P00724", "", "", "", "" ], [ "10227", "Protein", "NP_014026", "https://glygen.org/protein/P00729", "", "", "", "" ], [ "10227", "Protein", "NP_013050", "https://glygen.org/protein/Q03048", "", "", "", "" ], [ "10227", "Protein", "NP_010793", "https://glygen.org/protein/P50896", "", "", "", "" ], [ "10227", "Protein", "NP_009539", "https://glygen.org/protein/P32786", "", "", "", "" ], [ "10227", "Protein", "NP_015217", "https://glygen.org/protein/Q02872", "", "", "", "" ], [ "10227", "Protein", "NP_015218", "https://glygen.org/protein/Q02873", "", "", "", "" ], [ "10227", "Protein", "NP_015220", "https://glygen.org/protein/Q02875", "", "", "", "" ], [ "10227", "Protein", "NP_012890", "https://glygen.org/protein/P36096", "", "", "", "" ] ] }, "readme": "Name\n - Yeast NCBI Protein Linkouts\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2022-09-14T12:25:39.026264\n\nModified on\n - 2023-09-11T19:10:37\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Yeast NCBI Protein Linkouts contains yeast [taxid:559292] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: yeast_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_proteinnames_refseq.csv\n Name: yeast_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_xref_refseq.csv\n Output Subdomain\n Name: yeast_protein_ncbi_linkouts.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_ncbi_linkouts.csv\n Name: yeast_protein_ncbi_linkouts.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"5846\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"5846\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/yeast_protein_ncbi_linkouts.csv" }