{ "bcoid": "GLY_000744", "title": "Yeast Protein Alternative Name (UniProtKB)", "description": "The Yeast Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for yeast ...", "filename": "yeast_protein_altnames.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Protein Alternative Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P39976-1...", "D-lactate de..." ], [ "P39976-1...", "D-lactate fe..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "P39976-1", "D-lactate dehydrogenase [cytochrome] 3", "", "1.1.2.4" ], [ "P39976-1", "D-lactate ferricytochrome C oxidoreductase", "D-LCR", "" ], [ "P39976-1", "(R)-2-hydroxyglutarate--pyruvate transhydrogenase", "", "" ], [ "P39975-1", "Required for meiotic nuclear division protein 6", "", "" ], [ "P39979-1", "Histone and other protein acetyltransferase 3", "", "" ], [ "Q07959-1", "Implicated in zinc homeostasis protein 3", "", "" ], [ "P0CX69-1", "Transposon Ty1 protein A", "TY1A", "" ], [ "P0CX69-1", "Transposon Ty1 protein A", "TYA", "" ], [ "P0CX69-1", "Gag-p49", "", "" ], [ "P0CX69-1", "p58", "", "" ], [ "P0CX69-1", "p54", "", "" ], [ "P0CX69-1", "Gag-p45", "", "" ], [ "P25379-1", "L-threonine deaminase", "", "" ], [ "P25379-1", "L-serine deaminase", "", "" ], [ "P25378-1", "GTP-binding protein RSG1", "", "" ], [ "P25374-1", "tRNA-splicing protein SPL1", "", "" ], [ "P25373-1", "Glutathione-dependent oxidoreductase 1", "", "" ], [ "Q06568-1", "Nuclear distribution protein nudE-like 1", "", "" ], [ "Q06567-1", "MIOREX complex component 13", "", "" ], [ "Q06567-1", "MDM10-complementing protein 2", "", "" ], [ "Q06567-1", "Mitochondrial organization of gene expression protein 13", "", "" ], [ "Q06563-1", "Stress-inducible yeast MPV17 protein 1", "", "" ], [ "Q00539-1", "U1 snRNP component NAM8", "", "" ], [ "Q00539-1", "Nuclear accommodation of mitochondria protein 8", "", "" ], [ "Q07748-1", "Thiamine pyrimidine synthase", "", "" ], [ "Q07748-1", "Thiamine biosynthesis protein 13", "", "" ], [ "Q07963-1", "Ubiquitin-protein ligase E3 component N-recognin-1 homolog", "", "" ], [ "Q07963-1", "RING-type E3 ubiquitin transferase UBR2", "", "" ], [ "P40422-1", "ABC10-alpha", "", "" ], [ "P0CX64-1", "TY2A-TY2B", "", "" ], [ "P0CX64-1", "Transposon Ty2 TYA-TYB polyprotein", "", "" ], [ "P0CX67-1", "Transposon Ty1 protein A", "TY1A", "" ], [ "P0CX67-1", "Transposon Ty1 protein A", "TYA", "" ], [ "P0CX67-1", "Gag-p49", "", "" ], [ "P0CX67-1", "p58", "", "" ], [ "P0CX67-1", "p54", "", "" ], [ "P0CX67-1", "Gag-p45", "", "" ], [ "Q03441-1", "Required for meiotic nuclear division protein 1", "", "" ], [ "Q08747-1", "Upstream activation factor 30 KDa subunit", "p30", "" ], [ "Q08745-1", "40S ribosomal protein S10-A", "", "" ], [ "Q08742-1", "Found in mitochondrial proteome protein 31", "", "" ], [ "Q08742-1", "Altered inheritance of mitochondria protein 42", "", "" ], [ "Q08742-1", "Rhodanese-like protein 2", "", "" ], [ "P32915-1", "Sec61 complex subunit SEC61", "", "" ], [ "P32915-1", "Sec61 complex subunit alpha", "", "" ], [ "P32914-1", "Chromatin elongation factor SPT4", "", "" ], [ "P32916-1", "Docking protein alpha", "DP-alpha", "" ], [ "P32911-1", "Protein translation factor SUI1", "", "" ], [ "P32910-1", "DNA-directed RNA polymerase III 36 kDa polypeptide", "", "" ], [ "P32910-1", "C34", "", "" ], [ "P32913-1", "Carboxypeptidase Y-deficient protein 21", "", "" ], [ "Q04439-1", "Actin-dependent myosin-I MYO5", "", "" ], [ "Q04439-1", "Type I myosin MYO5", "", "" ], [ "Q04439-1", "Class I unconventional myosin MYO5", "", "" ], [ "Q04430-1", "Coenzyme A biosynthesis protein 1", "", "" ], [ "Q04430-1", "Pantothenic acid kinase CAB1", "", "" ], [ "Q04432-1", "Heat shock protein 31", "", "" ], [ "Q04432-1", "Glyoxalase 3 homolog 1", "", "" ], [ "Q04437-1", "Yeast Ku80", "", "" ], [ "Q04437-1", "ATP-dependent DNA helicase II subunit Ku80", "", "" ], [ "Q04437-1", "High affinity DNA-binding factor subunit 2", "", "" ], [ "P00546-1", "Cell division protein kinase 1", "", "" ], [ "P00546-1", "Cell division control protein 28", "", "" ], [ "P04385-1", "Galactose kinase", "", "" ], [ "Q08299-1", "Siderophore iron transporter ARN4", "", "" ], [ "Q08299-1", "Enterobactin permease", "", "" ], [ "Q08562-1", "Ubiquitin ligase for SUMO conjugates protein 1", "", "" ], [ "Q08562-1", "Role in silencing protein 1", "", "" ], [ "P25377-1", "NADP-dependent alcohol dehydrogenase VII", "ADHVII", "" ], [ "P25376-1", "Asparagine/glutamine permease", "", "" ], [ "P32474-1", "Endoplasmic reticulum protein EUG1", "", "" ], [ "P09007-1", "Suppressor of rRNA-processing defect protein 1", "", "" ], [ "P04037-1", "Cytochrome c oxidase polypeptide IV", "", "" ], [ "P04039-1", "Cytochrome c oxidase polypeptide VIII", "", "" ], [ "P00724-1", "Beta-fructofuranosidase 2", "", "" ], [ "P00724-1", "Saccharase", "", "" ], [ "P00729-1", "Carboxypeptidase YSCY", "", "" ], [ "Q03048-1", "Actin-depolymerizing factor 1", "", "" ], [ "P50896-1", "Growth inhibitory protein 5", "", "" ], [ "P50896-1", "Polymerase suppressor protein 1", "", "" ], [ "P36096-1", "RING-type E3 ubiquitin transferase TUL1", "", "" ], [ "Q10740-1", "Epoxide hydrolase", "", "3.3.2.10" ], [ "Q10740-1", "Leucyl aminopeptidase yscIV", "AP IV", "" ], [ "Q10740-1", "Leukotriene A-4 hydrolase homolog", "LTA-4 hydrolase", "" ] ] }, "readme": "Name\n - Yeast Protein Alternative Name (UniProtKB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2022-08-30T13:19:31.385999\n\nModified on\n - 2023-09-11T18:51:37\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for yeast [taxid:559292] proteins. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_altnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_altnames.csv\n Name: yeast_protein_altnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/yeast_protein_altnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"3455\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"5627\"\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"579\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"64\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/yeast_protein_altnames.csv" }