{ "bcoid": "GLY_000730", "title": "Rat UniProtKB xref GlyConnect", "description": "Rat UniProtKB xref GlyConnect dataset contains rat(taxid: 10116) UniProtKB canonical accessions mapped ...", "filename": "rat_protein_xref_glyconnect.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "GlyConnect Cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A8I6A4X3-1...", "protein_xref..." ], [ "A0A8I6A4X3-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "385", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "357", "" ], 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"A0A8I6A4X3-1", "protein_xref_glyconnect", "10478", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11674", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11689", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11961", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11486", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "2818", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "3465", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11731", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11833", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11904", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11886", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11845", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11613", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11540", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11883", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11778", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11945", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11850", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "1378", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11165", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11173", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "2967", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11110", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "211", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "1028", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11149", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11583", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "10512", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "2626", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "10445", "" ], [ "A0A8I6A4X3-1", "protein_xref_glyconnect", "11873", "" ] ] }, "readme": "Name\n - Rat UniProtKB xref GlyConnect\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2023-03-03T03:58:28.936Z\n\nModified on\n - 2023-03-03T03:58:29.019Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - Rat UniProtKB xref GlyConnect dataset contains rat(taxid: 10116) UniProtKB canonical accessions mapped to the GlyConnect IDs.\n\nDescription Domain\n Keywords\n - Xref\n - GlyConnect\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the Glyconnect Database IDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: rat_protein_xref_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_xref_glyconnect.csv\n Name: rat_protein_xref_glyconnect.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_xref_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"17\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"106\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/rat_protein_xref_glyconnect.csv" }