{ "bcoid": "GLY_000720", "title": "The Rat Glycan Interaction data Citations (MatrixDB)", "description": "The Rat Glycan Interaction data Citations (MatrixDB)] contains details of the publication present in ...", "filename": "rat_protein_citations_matrixdb.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Glycan Interaction Data Citations (MatrixDB)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q6AXS5-1...", "A systems bi..." ], [ "O35799-1...", "A systems bi..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q6AXS5-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "O35799-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q10739-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P55314-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "O70535-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P22734-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "O88397-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q5XIE8-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q80W57-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P97887-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P26644-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q5RLM2-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P23562-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q9JHW1-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P53987-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P18614-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P15083-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "O88923-7", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q6AXM8-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P13599-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q63377-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P31722-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q6AY78-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P04157-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P01015-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q6AYS8-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P08033-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P06238-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P04937-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "B2GUY2-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q9JHZ9-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P14668-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "O54861-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q62904-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P97675-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P55159-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q5M848-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q9Z2H4-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q62930-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "O88182-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q924C3-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P31211-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q4V8K1-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P06866-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q63488-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P07943-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q62720-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q08201-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P14669-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P07151-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q99376-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P07340-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P97829-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P20909-1", "Isoform-specific heparan sulfate binding within the amino-terminal noncollagenous domain of collagen alpha1(XI).", "The Journal of biological chemistry", "2006 Dec 22", "Warner LR, Brown RJ, Yingst SM, Oxford JT", "protein_xref_pubmed", "17062562", "glycan_xref_matrixdb", "GAG_2" ], [ "P20909-1", "Isoform-specific heparan sulfate binding within the amino-terminal noncollagenous domain of collagen alpha1(XI).", "The Journal of biological chemistry", "2006 Dec 22", "Warner LR, Brown RJ, Yingst SM, Oxford JT", "protein_xref_pubmed", "17062562", "glycan_xref_matrixdb", "GAG_1" ], [ "Q64240-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P21588-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "M0RBP3-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P17475-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P16310-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "O88269-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P14480-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q01177-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q62876-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P06685-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P07867-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P15389-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P08592-1", "Interaction between the zinc (II) and the heparin binding site of the Alzheimer's disease beta A4 amyloid precursor protein (APP).", "FEBS letters", "1994 Nov 28", "Multhaup G, Bush AI, Pollwein P, Masters CL", "protein_xref_pubmed", "7982489", "glycan_xref_matrixdb", "GAG_1" ], [ "P02767-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q6AYF9-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q7TMA5-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P14668-1", "Annexin V--heparin oligosaccharide complex suggests heparan sulfate--mediated assembly on cell surfaces.", "Structure (London, England : 1993)", "2001 Jan 10", "Capila I, Hernaiz MJ, Mo YD, Mealy TR, Campos B, Dedman JR, Linhardt RJ, Seaton BA", "protein_xref_pubmed", "11342135", "glycan_xref_matrixdb", "GAG_1" ], [ "B5D5N9-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P08649-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q6P7R8-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P11232-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P18292-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P50280-1", "Heparan sulfate proteoglycans as extracellular docking molecules for matrilysin (matrix metalloproteinase 7).", "The Journal of biological chemistry", "2000 Feb 11", "Yu WH, Woessner JF Jr", "protein_xref_pubmed", "10660581", "glycan_xref_matrixdb", "GAG_1" ], [ "Q07969-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "Q63089-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P12346-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P15127-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P47853-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ], [ "P02680-1", "A systems biology approach for the investigation of the heparin/heparan sulfate interactome.", "The Journal of biological chemistry", "2011 Jun 3", "Ori A, Wilkinson MC, Fernig DG", "protein_xref_pubmed", "21454685", "glycan_xref_matrixdb", "GAG_1" ] ] }, "readme": "Name\n - The Rat Glycan Interaction data Citations (MatrixDB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Sylvie Ricard-Blum [sylvie.ricard-blum@univ-lyon1.fr]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Glycan Interaction data Citations (MatrixDB)] contains details of the publication present in the dataset The Rat Glycan Interaction data Citations (MatrixDB) https://data.glygen.org/GLY_000334.\n\nDescription Domain\n Keywords\n - MatrixDB\n - Glycan Interaction\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_matrixdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_matrixdb.csv\n Output Subdomain\n Name: rat_protein_citations_matrixdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_citations_matrixdb.csv\n Name: rat_protein_citations_matrixdb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_citations_matrixdb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"149\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"8\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"4\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"8\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"8\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"3\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/rat_protein_citations_matrixdb.csv" }