{
    "bcoid": "GLY_000668",
    "title": "Fruitfly UniProtKB Xref PANTHER",
    "description": "The Fruitfly UniProtKB Xref PANTHER contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...",
    "filename": "fruitfly_protein_xref_panther.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Panther cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "M9PJ12-1...",
                "protein_xref..."
            ],
            [
                "M9PJ12-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "M9PJ12-1",
                "protein_xref_panther",
                "PTHR10816",
                "MYELIN TRANSCRIPTION FACTOR 1-RELATED"
            ],
            [
                "M9PJ12-1",
                "protein_xref_panther",
                "PTHR10816:SF15",
                "AGAP000874-PA"
            ],
            [
                "P34082-1",
                "protein_xref_panther",
                "PTHR12231",
                "CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN"
            ],
            [
                "P34082-1",
                "protein_xref_panther",
                "PTHR12231:SF269",
                "NEURAL CELL ADHESION MOLECULE"
            ],
            [
                "P40796-1",
                "protein_xref_panther",
                "PTHR22792",
                "LUPUS LA PROTEIN-RELATED"
            ],
            [
                "P40796-1",
                "protein_xref_panther",
                "PTHR22792:SF166",
                "LUPUS LA PROTEIN HOMOLOG"
            ],
            [
                "P40797-1",
                "protein_xref_panther",
                "PTHR18884:SF126",
                "SEPTIN"
            ],
            [
                "P40797-1",
                "protein_xref_panther",
                "PTHR18884",
                "SEPTIN"
            ],
            [
                "P40792-1",
                "protein_xref_panther",
                "PTHR24072:SF359",
                "RAS-RELATED PROTEIN RAC1-RELATED"
            ],
            [
                "P40792-1",
                "protein_xref_panther",
                "PTHR24072",
                "RHO FAMILY GTPASE"
            ],
            [
                "P40793-1",
                "protein_xref_panther",
                "PTHR24072:SF192",
                "CDC42 HOMOLOG"
            ],
            [
                "P40793-1",
                "protein_xref_panther",
                "PTHR24072",
                "RHO FAMILY GTPASE"
            ],
            [
                "P40791-1",
                "protein_xref_panther",
                "PTHR11945:SF534",
                "MYOCYTE-SPECIFIC ENHANCER FACTOR 2"
            ],
            [
                "P40791-1",
                "protein_xref_panther",
                "PTHR11945",
                "MADS BOX PROTEIN"
            ],
            [
                "P40798-1",
                "protein_xref_panther",
                "PTHR12360",
                "NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1"
            ],
            [
                "P40798-1",
                "protein_xref_panther",
                "PTHR12360:SF12",
                "TRANSCRIPTIONAL REPRESSOR NF-X1"
            ],
            [
                "P40421-1",
                "protein_xref_panther",
                "PTHR45668",
                "SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED"
            ],
            [
                "P40421-1",
                "protein_xref_panther",
                "PTHR45668:SF3",
                "SERINE/THREONINE-PROTEIN PHOSPHATASE RDGC"
            ],
            [
                "P40423-1",
                "protein_xref_panther",
                "PTHR23049",
                "MYOSIN REGULATORY LIGHT CHAIN 2"
            ],
            [
                "P40423-1",
                "protein_xref_panther",
                "PTHR23049:SF34",
                "MYOSIN REGULATORY LIGHT CHAIN SQH"
            ],
            [
                "P40427-1",
                "protein_xref_panther",
                "PTHR11850:SF108",
                "HOMEOBOX PROTEIN EXTRADENTICLE"
            ],
            [
                "P40427-1",
                "protein_xref_panther",
                "PTHR11850",
                "HOMEOBOX PROTEIN TRANSCRIPTION FACTORS"
            ],
            [
                "P08841-1",
                "protein_xref_panther",
                "PTHR11588",
                "TUBULIN"
            ],
            [
                "P08841-1",
                "protein_xref_panther",
                "PTHR11588:SF273",
                "TUBULIN BETA-3 CHAIN-RELATED"
            ],
            [
                "Q9VE87-1",
                "protein_xref_panther",
                "PTHR23035",
                "UNCHARACTERIZED"
            ],
            [
                "Q9VE87-1",
                "protein_xref_panther",
                "PTHR23035:SF1",
                "CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 97"
            ],
            [
                "Q9VE86-1",
                "protein_xref_panther",
                "PTHR13620",
                "3-5 EXONUCLEASE"
            ],
            [
                "Q9VE86-1",
                "protein_xref_panther",
                "PTHR13620:SF109",
                "WERNER SYNDROME-LIKE EXONUCLEASE"
            ],
            [
                "Q9VE85-1",
                "protein_xref_panther",
                "PTHR22652",
                "NUCLEOPORIN NUP43"
            ],
            [
                "Q9VE85-1",
                "protein_xref_panther",
                "PTHR22652:SF0",
                "NUCLEOPORIN NUP43"
            ],
            [
                "P05389-1",
                "protein_xref_panther",
                "PTHR21141",
                "60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER"
            ],
            [
                "P05389-1",
                "protein_xref_panther",
                "PTHR21141:SF5",
                "60S ACIDIC RIBOSOMAL PROTEIN P2"
            ],
            [
                "Q9VK71-1",
                "protein_xref_panther",
                "PTHR11636",
                "POU DOMAIN"
            ],
            [
                "Q9VK71-1",
                "protein_xref_panther",
                "PTHR11636:SF76",
                "POU DOMAIN PROTEIN 2, ISOFORM B-RELATED"
            ],
            [
                "Q9V776-1",
                "protein_xref_panther",
                "PTHR24292:SF100",
                "CYP6A16, ISOFORM B-RELATED"
            ],
            [
                "Q9V776-1",
                "protein_xref_panther",
                "PTHR24292",
                "CYTOCHROME P450"
            ],
            [
                "Q9VRR2-1",
                "protein_xref_panther",
                "PTHR10783",
                "XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED"
            ],
            [
                "Q9VRR2-1",
                "protein_xref_panther",
                "PTHR10783:SF103",
                "XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1"
            ],
            [
                "Q9VRR3-1",
                "protein_xref_panther",
                "PTHR46384",
                "MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2"
            ],
            [
                "Q9VRR3-1",
                "protein_xref_panther",
                "PTHR46384:SF1",
                "MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2"
            ],
            [
                "Q9VRR0-1",
                "protein_xref_panther",
                "PTHR24064:SF316",
                "MFS DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q9VRR0-1",
                "protein_xref_panther",
                "PTHR24064",
                "SOLUTE CARRIER FAMILY 22 MEMBER"
            ],
            [
                "M9PEG2-1",
                "protein_xref_panther",
                "PTHR36694",
                "PASIFLORA 1, ISOFORM A-RELATED"
            ],
            [
                "M9PEG2-1",
                "protein_xref_panther",
                "PTHR36694:SF11",
                "AGAP006415-PA"
            ],
            [
                "M9PBR6-1",
                "protein_xref_panther",
                "PTHR46384",
                "MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2"
            ],
            [
                "M9PBR6-1",
                "protein_xref_panther",
                "PTHR46384:SF1",
                "MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2"
            ],
            [
                "Q8SX44-1",
                "protein_xref_panther",
                "PTHR14381",
                "DACTYLIN"
            ],
            [
                "Q8SX44-1",
                "protein_xref_panther",
                "PTHR14381:SF1",
                "F-BOX/WD REPEAT-CONTAINING PROTEIN 4"
            ],
            [
                "M9PEA4-1",
                "protein_xref_panther",
                "PTHR15832:SF2",
                "SH2 DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "M9PEA4-1",
                "protein_xref_panther",
                "PTHR15832",
                "SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG"
            ],
            [
                "P04388-1",
                "protein_xref_panther",
                "PTHR24070",
                "RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY"
            ],
            [
                "P04388-1",
                "protein_xref_panther",
                "PTHR24070:SF17",
                "RAS-LIKE PROTEIN 2"
            ],
            [
                "A1ZB47-1",
                "protein_xref_panther",
                "PTHR11920",
                "GUANYLYL CYCLASE"
            ],
            [
                "A1ZB47-1",
                "protein_xref_panther",
                "PTHR11920:SF504",
                "GUANYLATE CYCLASE"
            ],
            [
                "A1ZB42-1",
                "protein_xref_panther",
                "PTHR20844",
                "MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 9"
            ],
            [
                "A1ZB42-1",
                "protein_xref_panther",
                "PTHR20844:SF0",
                "MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 9"
            ],
            [
                "Q9VYT1-1",
                "protein_xref_panther",
                "PTHR31634",
                "BLOC-1-RELATED COMPLEX SUBUNIT 5"
            ],
            [
                "Q9VYT1-1",
                "protein_xref_panther",
                "PTHR31634:SF2",
                "BLOC-1-RELATED COMPLEX SUBUNIT 5"
            ],
            [
                "Q9VLI9-1",
                "protein_xref_panther",
                "PTHR23249",
                "TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT"
            ],
            [
                "Q9VLI9-1",
                "protein_xref_panther",
                "PTHR23249:SF15",
                "TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 4"
            ],
            [
                "Q9VLI1-1",
                "protein_xref_panther",
                "PTHR11607",
                "ALPHA-MANNOSIDASE"
            ],
            [
                "Q9VLI1-1",
                "protein_xref_panther",
                "PTHR11607:SF3",
                "ALPHA-MANNOSIDASE 2-RELATED"
            ],
            [
                "Q9VLI0-1",
                "protein_xref_panther",
                "PTHR11607",
                "ALPHA-MANNOSIDASE"
            ],
            [
                "Q9VLI0-1",
                "protein_xref_panther",
                "PTHR11607:SF3",
                "ALPHA-MANNOSIDASE 2-RELATED"
            ],
            [
                "Q9VLI2-1",
                "protein_xref_panther",
                "PTHR11607",
                "ALPHA-MANNOSIDASE"
            ],
            [
                "Q9VLI2-1",
                "protein_xref_panther",
                "PTHR11607:SF3",
                "ALPHA-MANNOSIDASE 2-RELATED"
            ],
            [
                "Q9VLI4-1",
                "protein_xref_panther",
                "PTHR36300",
                "RAW, ISOFORM A"
            ],
            [
                "Q9VLI4-1",
                "protein_xref_panther",
                "PTHR36300:SF1",
                "RAW, ISOFORM A"
            ],
            [
                "Q9VLI4-1",
                "protein_xref_panther",
                "PTHR36300",
                "RAW, ISOFORM A"
            ],
            [
                "Q9VLI4-1",
                "protein_xref_panther",
                "PTHR36300:SF1",
                "RAW, ISOFORM A"
            ],
            [
                "Q9VLI6-1",
                "protein_xref_panther",
                "PTHR11465",
                "CATALASE"
            ],
            [
                "Q9VLI6-1",
                "protein_xref_panther",
                "PTHR11465:SF9",
                "CATALASE"
            ],
            [
                "Q95RA8-1",
                "protein_xref_panther",
                "PTHR22599",
                "MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB"
            ],
            [
                "Q95RA8-1",
                "protein_xref_panther",
                "PTHR22599:SF8",
                "MOB KINASE ACTIVATOR-LIKE 1"
            ],
            [
                "Q27869-1",
                "protein_xref_panther",
                "PTHR11579",
                "PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE"
            ],
            [
                "Q27869-1",
                "protein_xref_panther",
                "PTHR11579:SF0",
                "PROTEIN-L-ISOASPARTATE(D-ASPARTATE) O-METHYLTRANSFERASE"
            ],
            [
                "E1JJ52-1",
                "protein_xref_panther",
                "PTHR47219",
                "RAB GTPASE-ACTIVATING PROTEIN 1-LIKE"
            ],
            [
                "E1JJ52-1",
                "protein_xref_panther",
                "PTHR47219:SF5",
                "TBC1 DOMAIN FAMILY MEMBER 1"
            ],
            [
                "A0A0B4KHI4-1",
                "protein_xref_panther",
                "PTHR21245",
                "HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN"
            ],
            [
                "A0A0B4KHI4-1",
                "protein_xref_panther",
                "PTHR21245:SF10",
                "SYNCRIP, ISOFORM Q-RELATED"
            ],
            [
                "A0A0B4KG03-1",
                "protein_xref_panther",
                "PTHR48051:SF1",
                "NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE-RELATED"
            ],
            [
                "A0A0B4KHI4-1",
                "protein_xref_panther",
                "PTHR21245",
                "HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN"
            ],
            [
                "A0A0B4KHI4-1",
                "protein_xref_panther",
                "PTHR21245:SF10",
                "SYNCRIP, ISOFORM Q-RELATED"
            ],
            [
                "Q02870-1",
                "protein_xref_panther",
                "PTHR11274",
                "RAD25/XP-B DNA REPAIR HELICASE"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly UniProtKB Xref PANTHER\n\nVersion\n   - v-2.2.1\n\nCreated on\n  - 2022-08-31T13:34:27.210052\n\nModified on\n   - 2022-09-26T09:08:12.543006\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly UniProtKB Xref PANTHER contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers.  If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n   Keywords\n   - protein family\n   - PANTHER\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-drosophila-melanogaster.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-drosophila-melanogaster.nt\n   Output Subdomain\n      Name: fruitfly_protein_xref_panther.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_xref_panther.csv\n      Name: fruitfly_protein_xref_panther.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_xref_panther.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"10907\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"12683\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"10503\"",
    "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/fruitfly_protein_xref_panther.csv"
}