{ "bcoid": "GLY_000660", "title": "Fruitfly UniProtKB Xref CDD", "description": "The Fruitfly UniProtKB Xref CDD contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...", "filename": "fruitfly_protein_xref_cdd.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tag": [ "Cdd cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P34082-1...", "protein_xref..." ], [ "P34082-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P34082-1", "protein_xref_cdd", "cd00063", "FN3" ], [ "P34082-1", "protein_xref_cdd", "cd20976", "IgI_4_MYLK-like" ], [ "P34082-1", "protein_xref_cdd", "cd00096", "Ig" ], [ "P40796-1", "protein_xref_cdd", "cd08028", "LARP_3" ], [ "P40796-1", "protein_xref_cdd", "cd12291", "RRM1_La" ], [ "P40796-1", "protein_xref_cdd", "cd12541", "RRM2_La" ], [ "P40797-1", "protein_xref_cdd", "cd01850", "CDC_Septin" ], [ "P40797-1", "protein_xref_cdd", "cd22265", "UDM1_RNF168" ], [ "P40792-1", "protein_xref_cdd", "cd01871", "Rac1_like" ], [ "P40793-1", "protein_xref_cdd", "cd01874", "Cdc42" ], [ "P40791-1", "protein_xref_cdd", "cd00265", "MADS_MEF2_like" ], [ "P40798-1", "protein_xref_cdd", "cd02643", "R3H_NF-X1" ], [ "P40798-1", "protein_xref_cdd", "cd06008", "NF-X1-zinc-finger" ], [ "P40421-1", "protein_xref_cdd", "cd00051", "EFh" ], [ "P40423-1", "protein_xref_cdd", "cd00051", "EFh" ], [ "P40427-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "A2VEV2-1", "protein_xref_cdd", "cd00060", "FHA" ], [ "P08841-1", "protein_xref_cdd", "cd02187", "beta_tubulin" ], [ "Q9VE86-1", "protein_xref_cdd", "cd06141", "WRN_exo" ], [ "P05389-1", "protein_xref_cdd", "cd05833", "Ribosomal_P2" ], [ "Q9VK71-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "Q9V776-1", "protein_xref_cdd", "cd11056", "CYP6-like" ], [ "Q9VRR2-1", "protein_xref_cdd", "cd14477", "SPX_XPR1_like" ], [ "Q9VRR3-1", "protein_xref_cdd", "cd00170", "SEC14" ], [ "M9PEA4-1", "protein_xref_cdd", "cd00173", "SH2" ], [ "P04388-1", "protein_xref_cdd", "cd04145", "M_R_Ras_like" ], [ "A1ZB47-1", "protein_xref_cdd", "cd07302", "CHD" ], [ "A1ZB48-1", "protein_xref_cdd", "cd00037", "CLECT" ], [ "Q9VYT1-1", "protein_xref_cdd", "cd22789", "BORCS5-like" ], [ "Q9VLI9-1", "protein_xref_cdd", "cd14856", "TRAPPC4_synbindin" ], [ "Q9VLI1-1", "protein_xref_cdd", "cd10810", "GH38N_AMII_LAM_like" ], [ "Q9VLI0-1", "protein_xref_cdd", "cd10810", "GH38N_AMII_LAM_like" ], [ "Q9VLI2-1", "protein_xref_cdd", "cd10810", "GH38N_AMII_LAM_like" ], [ "Q27869-1", "protein_xref_cdd", "cd02440", "AdoMet_MTases" ], [ "E1JJ52-1", "protein_xref_cdd", "cd01269", "PTB_TBC1D1_like" ], [ "A0A0B4KHI4-1", "protein_xref_cdd", "cd12250", "RRM2_hnRNPR_like" ], [ "A0A0B4KHI4-1", "protein_xref_cdd", "cd12249", "RRM1_hnRNPR_like" ], [ "A0A0B4KHI4-1", "protein_xref_cdd", "cd12251", "RRM3_hnRNPR_like" ], [ "A0A0B4KHI4-1", "protein_xref_cdd", "cd21065", "NURR_Syncrip-like" ], [ "A0A0B4KHI4-1", "protein_xref_cdd", "cd12250", "RRM2_hnRNPR_like" ], [ "A0A0B4KHI4-1", "protein_xref_cdd", "cd12249", "RRM1_hnRNPR_like" ], [ "A0A0B4KHI4-1", "protein_xref_cdd", "cd12251", "RRM3_hnRNPR_like" ], [ "A0A0B4KHI4-1", "protein_xref_cdd", "cd21065", "NURR_Syncrip-like" ], [ "Q02870-1", "protein_xref_cdd", "cd18029", "DEXHc_XPB" ], [ "Q02870-1", "protein_xref_cdd", "cd18789", "SF2_C_XPB" ], [ "E1JH39-1", "protein_xref_cdd", "cd17716", "BRCT_microcephalin_rpt1" ], [ "Q7JUM3-1", "protein_xref_cdd", "cd03796", "GT4_PIG-A-like" ], [ "M9PB30-1", "protein_xref_cdd", "cd00054", "EGF_CA" ], [ "M9PB30-1", "protein_xref_cdd", "cd00054", "EGF_CA" ], [ "M9PB30-1", "protein_xref_cdd", "cd00054", "EGF_CA" ], [ "Q95R34-1", "protein_xref_cdd", "cd00170", "SEC14" ], [ "Q9VME2-1", "protein_xref_cdd", "cd08662", "M13" ], [ "Q9VME3-1", "protein_xref_cdd", "cd08662", "M13" ], [ "Q9VZZ6-1", "protein_xref_cdd", "cd03443", "PaaI_thioesterase" ], [ "A0A0B4KFC4-1", "protein_xref_cdd", "cd18315", "BTB_POZ_BAB-like" ], [ "Q86S05-1", "protein_xref_cdd", "cd14277", "UBA_UBP2_like" ], [ "P17336-1", "protein_xref_cdd", "cd08156", "catalase_clade_3" ], [ "A0A0B4KFC9-1", "protein_xref_cdd", "cd03875", "M28_Fxna_like" ], [ "A8JQT5-1", "protein_xref_cdd", "cd14473", "FERM_B-lobe" ], [ "A8JQT5-1", "protein_xref_cdd", "cd13193", "FERM_C_FARP1-like" ], [ "A8JQT5-1", "protein_xref_cdd", "cd01220", "PH1_FARP1-like" ], [ "A8JQT5-1", "protein_xref_cdd", "cd13235", "PH2_FARP1-like" ], [ "A8JQT5-1", "protein_xref_cdd", "cd17098", "FERM_F1_FARP1_like" ], [ "Q7KN75-1", "protein_xref_cdd", "cd02394", "KH-I_Vigilin_rpt6" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22405", "KH-I_Vigilin_rpt1" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22406", "KH-I_Vigilin_rpt2" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22407", "KH-I_Vigilin_rpt3" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22408", "KH-I_Vigilin_rpt4" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22409", "KH-I_Vigilin_rpt5" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22410", "KH-I_Vigilin_rpt7" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22411", "KH-I_Vigilin_rpt8" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22412", "KH-I_Vigilin_rpt9" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22413", "KH-I_Vigilin_rpt10" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22414", "KH-I_Vigilin_rpt11" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22415", "KH-I_Vigilin_rpt12" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22416", "KH-I_Vigilin_rpt13" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22417", "KH-I_Vigilin_rpt14" ], [ "Q7KN75-1", "protein_xref_cdd", "cd22418", "KH-I_Vigilin_rpt15" ], [ "Q9VWS8-1", "protein_xref_cdd", "cd20379", "Tudor_dTUD-like" ], [ "P16241-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "Q9VWS7-1", "protein_xref_cdd", "cd14297", "UBA2_spUBP14_like" ], [ "Q9VWS0-1", "protein_xref_cdd", "cd15585", "PHD_ING3" ], [ "Q9VWS0-1", "protein_xref_cdd", "cd16858", "ING_ING3_Yng2p" ], [ "Q9VWS2-1", "protein_xref_cdd", "cd12441", "RRM_Nup53_like" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref CDD\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2022-08-31T12:47:56.887721\n\nModified on\n - 2022-09-26T09:08:12.728533\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref CDD contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to CDD database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The Conserved Domain Database is a database of well-annotated multiple sequence alignment models and derived database search models, for ancient domains and full-length proteins.\n\nDescription Domain\n Keywords\n - protein domains\n - CDD\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CDD database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_cdd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_xref_cdd.csv\n Name: fruitfly_protein_xref_cdd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_xref_cdd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"5408\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"3916\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"3914\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/fruitfly_protein_xref_cdd.csv" }