{
    "bcoid": "GLY_000649",
    "title": "Fruitfly Protein Names (NCBI RefSeq)",
    "description": "The Fruitfly Protein Names (NCBI RefSeq) dataset contains fruitfly [taxid:7227] protein names (primary ...",
    "filename": "fruitfly_protein_proteinnames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Names"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "M9PJ12-1...",
                "NP_001259230..."
            ],
            [
                "M9PJ12-1...",
                "NP_001259230..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                }
            ],
            [
                "M9PJ12-1",
                "NP_001259230",
                "uncharacterized protein, isoform E"
            ],
            [
                "M9PJ12-1",
                "NP_001259230",
                "CG43689-PE"
            ],
            [
                "P34082-1",
                "NP_001259235",
                "fasciclin 2, isoform D"
            ],
            [
                "P34082-1",
                "NP_001259235",
                "CG3665-PD; Fas2-PD; FasciclinII; fasciclin 2; fasciculin II; fasII; fasciclin-II; fasciclin-2; fascicilin II; fasciclin2; FASCICLIN II; fasiclin II; fascilin II"
            ],
            [
                "P40796-1",
                "NP_477014",
                "La autoantigen-like"
            ],
            [
                "P40796-1",
                "NP_477014",
                "CG10922-PA; La-PA; ribonucleoprotein La"
            ],
            [
                "P40797-1",
                "NP_477064",
                "peanut, isoform A"
            ],
            [
                "P40797-1",
                "NP_477064",
                "CG8705-PA; pnut-PA; septin; enhancer of seven in absentia 8; septin 3; peanut; septin 7; septin[Pnut]"
            ],
            [
                "P40794-1",
                "NP_524604",
                "bottleneck"
            ],
            [
                "P40794-1",
                "NP_524604",
                "CG1480-PA; bnk-PA"
            ],
            [
                "P40795-1",
                "NP_001033860",
                "folded gastrulation, isoform B"
            ],
            [
                "P40795-1",
                "NP_001033860",
                "CG9559-PB; fog-PB; folded gastrulation"
            ],
            [
                "P40792-1",
                "NP_001261247",
                "Rac1, isoform B"
            ],
            [
                "P40792-1",
                "NP_001261247",
                "CG2248-PB; Rac1-PB; Rac GTPase"
            ],
            [
                "P40793-1",
                "NP_001245762",
                "Cdc42, isoform C"
            ],
            [
                "P40793-1",
                "NP_001245762",
                "CG12530-PC; Cdc42-PC; Cdc42-like"
            ],
            [
                "P40791-1",
                "NP_477018",
                "myocyte enhancer factor 2, isoform C"
            ],
            [
                "P40791-1",
                "NP_477018",
                "CG1429-PC; Mef2-PC; complementation group C; myocyte enhancer factor-2; myocyte enhancing factor 2; Myocyte-enhancer factor 2; myocyte-specific enhancer factor 2; Myocyte-enhancer factor-2; drosophila myocyte-specific enhancer factor 2; DMEF2; Drosophila-myocyte enhancer factor 2"
            ],
            [
                "P40798-1",
                "NP_476598",
                "shuttle craft, isoform A"
            ],
            [
                "P40798-1",
                "NP_476598",
                "CG3647-PA; stc-PA; Chorion-factor-4; shuttlecraft"
            ],
            [
                "P40421-1",
                "NP_536738",
                "retinal degeneration C, isoform F"
            ],
            [
                "P40421-1",
                "NP_536738",
                "CG44746-PF; rdgC-PF"
            ],
            [
                "P40423-1",
                "NP_001284928",
                "spaghetti squash, isoform B"
            ],
            [
                "P40423-1",
                "NP_001284928",
                "CG3595-PB; sqh-PB; Myo-II regulatory light chain; non-muscle myosin II regulatory light chain; regulatory light chain of nonmuscle myosin II; nonmuscle myosin II regulatory light chain; spaghetti squash; Spaghetti-Squash; myosin regulatory light chain; myosin II regulatory subunit; MyoII; myosin 2; nonmuscle MyoII; regulatory light chain of nonmuscle myosin-II; myosinII; actomyosin; Myosin-II light chain; phospho-Myosin light chain 2; non-muscle myosin-II; regulatory myosin light chain; myosin LC; regulatory light chain of myosin; MyoII regulatory light chain; type II myosin regulatory light chain; regulatory light chain of myosin II"
            ],
            [
                "P40427-1",
                "NP_001259592",
                "extradenticle, isoform D"
            ],
            [
                "P40427-1",
                "NP_001259592",
                "CG8933-PD; exd-PD; extradenticle; anon-fast-evolving-1H3; Pbx1-oncogene-like"
            ],
            [
                "A8JRH2-1",
                "NP_001247365",
                "uncharacterized protein, isoform B"
            ],
            [
                "A8JRH2-1",
                "NP_001247365",
                "CG34300-PB"
            ],
            [
                "A2VEV2-1",
                "NP_001096962",
                "uncharacterized protein"
            ],
            [
                "A2VEV2-1",
                "NP_001096962",
                "CG34323-PA"
            ],
            [
                "A2VEV0-1",
                "NP_001097733",
                "uncharacterized protein"
            ],
            [
                "A2VEV0-1",
                "NP_001097733",
                "CG34302-PB"
            ],
            [
                "P08841-1",
                "NP_523842",
                "beta-Tubulin at 60D, isoform A"
            ],
            [
                "P08841-1",
                "NP_523842",
                "CG3401-PA; betaTub60D-PA; beta-3 tubulin; Pin; beta3tubulin; beta-tubulin60D; beta tubulin; beta-3-tubulin; beta-tubulin at 60D; beta3-tubulin; beta 3 tubulin; beta3 tubulin; beta-Tubulin at 60A; beta-tubulin 60D; beta-3tubulin; b-3 tubulin; tubulin b-3; b3 tubulin; betatubulin; tack; 60C beta tubulin; B3-tubulin"
            ],
            [
                "Q9VE87-1",
                "NP_650714",
                "hemingway"
            ],
            [
                "Q9VE87-1",
                "NP_650714",
                "CG7669-PA; hmw-PA; Hmw"
            ],
            [
                "Q9VE86-1",
                "NP_001163646",
                "WRN exonuclease, isoform B"
            ],
            [
                "Q9VE86-1",
                "NP_001163646",
                "CG7670-PB; WRNexo-PB"
            ],
            [
                "Q9VE85-1",
                "NP_650716",
                "nucleoporin 43kD"
            ],
            [
                "Q9VE85-1",
                "NP_650716",
                "CG7671-PA; Nup43-PA; nucleoporin 43"
            ],
            [
                "P05389-1",
                "NP_523764",
                "ribosomal protein LP2"
            ],
            [
                "P05389-1",
                "NP_523764",
                "CG4918-PA; RpLP2-PA; ribosomal protein P1; temporal protein 1; ribosomal protein A1; rpA1; Temporal-protein-1; ACIDIC RIBOSOMAL PROTEIN LP2"
            ],
            [
                "Q9VK71-1",
                "NP_001285877",
                "POU domain protein 2, isoform C"
            ],
            [
                "Q9VK71-1",
                "NP_001285877",
                "CG12287-PC; pdm2-PC; didymous; Miti-mere; POU domain prot 2"
            ],
            [
                "Q9V776-1",
                "NP_001286435",
                "cytochrome P450 317a1, isoform B"
            ],
            [
                "Q9V776-1",
                "NP_001286435",
                "CG17453-PB; Cyp317a1-PB"
            ],
            [
                "Q9VRR2-1",
                "NP_648000",
                "uncharacterized protein, isoform A"
            ],
            [
                "Q9VRR2-1",
                "NP_648000",
                "CG10483-PA"
            ],
            [
                "Q9VRR3-1",
                "NP_001261456",
                "uncharacterized protein, isoform B"
            ],
            [
                "Q9VRR3-1",
                "NP_001261456",
                "CG32407-PB"
            ],
            [
                "Q9VRR0-1",
                "NP_647998",
                "uncharacterized protein, isoform B"
            ],
            [
                "Q9VRR0-1",
                "NP_647998",
                "CG10486-PB"
            ],
            [
                "M9PEG2-1",
                "NP_001097522",
                "uncharacterized protein, isoform B"
            ],
            [
                "M9PEG2-1",
                "NP_001097522",
                "CG13288-PB"
            ],
            [
                "M9PBR6-1",
                "NP_001014566",
                "uncharacterized protein, isoform A"
            ],
            [
                "M9PBR6-1",
                "NP_001014566",
                "CG33523-PA; MSP protein; VAMP-associated protein of 33kDa ortholog B"
            ],
            [
                "Q8SX44-1",
                "NP_001034035",
                "uncharacterized protein, isoform C"
            ],
            [
                "Q8SX44-1",
                "NP_001034035",
                "CG33969-PC"
            ],
            [
                "M9PEA4-1",
                "NP_648006",
                "uncharacterized protein, isoform A"
            ],
            [
                "M9PEA4-1",
                "NP_648006",
                "CG10479-PA"
            ],
            [
                "P04388-1",
                "NP_523917",
                "Ras oncogene at 64B"
            ],
            [
                "P04388-1",
                "NP_523917",
                "CG1167-PA; Ras64B-PA; small GTP binding protein; ras oncogene"
            ],
            [
                "A1ZB47-1",
                "NP_001033958",
                "uncharacterized protein"
            ],
            [
                "A1ZB47-1",
                "NP_001033958",
                "CG33958-PA"
            ],
            [
                "A1ZB42-1",
                "NP_788400",
                "mediator complex subunit 9"
            ],
            [
                "A1ZB42-1",
                "NP_788400",
                "CG42517-PC; MED9-PC; CPuORF of FBgn0260392"
            ],
            [
                "A1ZB48-1",
                "NP_611309",
                "uncharacterized protein"
            ],
            [
                "A1ZB48-1",
                "NP_611309",
                "CG14500-PA"
            ],
            [
                "A1ZB49-1",
                "NP_725765",
                "uncharacterized protein"
            ],
            [
                "A1ZB49-1",
                "NP_725765",
                "CG30114-PA"
            ],
            [
                "Q9VYT1-1",
                "NP_572759",
                "BLOC-1 related complex subunit 5"
            ],
            [
                "Q9VYT1-1",
                "NP_572759",
                "CG11802-PA; BORCS5-PA"
            ],
            [
                "Q9VLI9-1",
                "NP_609247",
                "TRAPP subunit 23"
            ],
            [
                "Q9VLI9-1",
                "NP_609247",
                "CG9298-PA; Trs23-PA; TRAPP subunit 23 ortholog"
            ],
            [
                "Q9VLI1-1",
                "NP_609251",
                "lysosomal alpha-mannosidase IV"
            ],
            [
                "Q9VLI1-1",
                "NP_609251",
                "CG9465-PB; LManIV-PB"
            ],
            [
                "Q9VLI0-1",
                "NP_001285763",
                "lysosomal alpha-mannosidase V, isoform B"
            ],
            [
                "Q9VLI0-1",
                "NP_001285763",
                "CG9466-PB; LManV-PB"
            ],
            [
                "Q9VLI3-1",
                "NP_609249",
                "uncharacterized protein"
            ],
            [
                "Q9VLI3-1",
                "NP_609249",
                "CG12438-PA"
            ],
            [
                "Q9VLI2-1",
                "NP_001285762",
                "lysosomal alpha-mannosidase III, isoform B"
            ],
            [
                "Q9VLI2-1",
                "NP_001285762",
                "CG9463-PB; LManIII-PB"
            ],
            [
                "Q9VLI4-1",
                "NP_524789",
                "raw, isoform B"
            ],
            [
                "Q9VLI4-1",
                "NP_524789",
                "CG12437-PB; raw-PB; ensheathment defects; cyrano"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Protein Names (NCBI RefSeq)\n\nVersion\n   - v-2.2.1\n\nCreated on\n  - 2022-08-31T10:35:44.201343\n\nModified on\n   - 2022-09-26T09:08:12.585707\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Protein Names (NCBI RefSeq) dataset contains fruitfly [taxid:7227] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_xref_refseq.csv\n   Output Subdomain\n      Name: fruitfly_protein_proteinnames_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_proteinnames_refseq.csv\n      Name: fruitfly_protein_proteinnames_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_proteinnames_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"13734\"\n      Name: \"refseq_ac\"\n     Description: \"Accession in the NCBI RefSeq database\"\n      Unique Values: \"20598\"\n      Name: \"refseq_protein_name\"\n     Description: \"Name of the protein in NCBI RefSeq database\"\n      Unique Values: \"33099\"",
    "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/fruitfly_protein_proteinnames_refseq.csv"
}