{ "bcoid": "GLY_000644", "title": "Fruitfly Gene Ontology (GO)", "description": "The Fruitfly Gene Ontology (GO) dataset contains fruitfly [taxid:7227] Gene Ontology Id and name, categories ...", "filename": "fruitfly_protein_go_annotation.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tag": [ "Gene Ontology (Go)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "M9PJ12-1...", "CG32778..." ], [ "M9PJ12-1...", "CG32778..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol" }, { "type": "string", "label": "go_term_id" }, { "type": "string", "label": "go_term_label" }, { "type": "string", "label": "go_term_category" }, { "type": "string", "label": "eco_id" }, { "type": "string", "label": "pmid" } ], [ "M9PJ12-1", "CG32778", "GO_0000122", "negative regulation of transcription by RNA polymerase II", "biological_process", "", "" ], [ "M9PJ12-1", "CG32778", "GO_0003700", "DNA-binding transcription factor activity", "molecular_function", "", "" ], [ "M9PJ12-1", "CG32778", "GO_0005634", "nucleus", "cellular_component", "", "" ], [ "M9PJ12-1", "CG32778", "GO_0006357", "regulation of transcription by RNA polymerase II", "biological_process", "", "" ], [ "M9PJ12-1", "CG32778", "GO_0008270", "zinc ion binding", "molecular_function", "", "" ], [ "M9PJ12-1", "CG32778", "GO_0001227", "DNA-binding transcription repressor activity, RNA polymerase II-specific", "molecular_function", "", "" ], [ "M9PJ12-1", "CG32778", "GO_0000978", "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "molecular_function", "", "" ], [ "M9PJ12-1", "CG32778", "GO_0000981", "DNA-binding transcription factor activity, RNA polymerase II-specific", "molecular_function", "", "" ], [ "P34082-1", "Fas2", "GO_0007155", "cell adhesion", "biological_process", "", "" ], [ "P34082-1", "Fas2", "GO_0016020", "membrane", "cellular_component", "", "" ], [ "P34082-1", "Fas2", "GO_0030154", "cell differentiation", "biological_process", "", "" ], [ "P34082-1", "Fas2", "GO_0009653", "anatomical structure morphogenesis", "biological_process", "", "" ], [ "P40796-1", "La", "GO_0003677", "DNA binding", "molecular_function", "", "" ], [ "P40796-1", "La", "GO_0003729", "mRNA binding", "molecular_function", "", "" ], [ "P40796-1", "La", "GO_0005634", "nucleus", "cellular_component", "", "" ], [ "P40796-1", "La", "GO_0005829", "cytosol", "cellular_component", "", "" ], [ "P40796-1", "La", "GO_0006396", "RNA processing", "biological_process", "", "" ], [ "P40796-1", "La", "GO_0045727", "positive regulation of translation", "biological_process", "", "" ], [ "P40796-1", "La", "GO_0000791", "euchromatin", "cellular_component", "", "" ], [ "P40796-1", "La", "GO_0010494", "cytoplasmic stress granule", "cellular_component", "", "" ], [ "P40796-1", "La", "GO_1990904", "ribonucleoprotein complex", "cellular_component", "", "" ], [ "P40796-1", "La", "GO_0008098", "5S rRNA primary transcript binding", "molecular_function", "", "" ], [ "P40797-1", "pnut", "GO_0060090", "molecular adaptor activity", "molecular_function", "", "" ], [ "P40797-1", "pnut", "GO_0005940", "septin ring", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0003779", "actin binding", "molecular_function", "", "" ], [ "P40797-1", "pnut", "GO_0003924", "GTPase activity", "molecular_function", "", "" ], [ "P40797-1", "pnut", "GO_0005525", "GTP binding", "molecular_function", "", "" ], [ "P40797-1", "pnut", "GO_0005739", "mitochondrion", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0005886", "plasma membrane", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0008017", "microtubule binding", "molecular_function", "", "" ], [ "P40797-1", "pnut", "GO_0042803", "protein homodimerization activity", "molecular_function", "", "" ], [ "P40797-1", "pnut", "GO_0043065", "positive regulation of apoptotic process", "biological_process", "", "" ], [ "P40797-1", "pnut", "GO_0006915", "apoptotic process", "biological_process", "", "" ], [ "P40797-1", "pnut", "GO_0015630", "microtubule cytoskeleton", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0016324", "apical plasma membrane", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0031625", "ubiquitin protein ligase binding", "molecular_function", "", "" ], [ "P40797-1", "pnut", "GO_0045171", "intercellular bridge", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0032154", "cleavage furrow", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0060271", "cilium assembly", "biological_process", "", "" ], [ "P40797-1", "pnut", "GO_0000281", "mitotic cytokinesis", "biological_process", "", "" ], [ "P40797-1", "pnut", "GO_0070938", "contractile ring", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0031105", "septin complex", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0061640", "cytoskeleton-dependent cytokinesis", "biological_process", "", "" ], [ "P40797-1", "pnut", "GO_0032153", "cell division site", "cellular_component", "", "" ], [ "P40797-1", "pnut", "GO_0007349", "cellularization", "biological_process", "", "" ], [ "P40797-1", "pnut", "GO_0007476", "imaginal disc-derived wing morphogenesis", "biological_process", "", "" ], [ "P40797-1", "pnut", "GO_0045572", "positive regulation of imaginal disc growth", "biological_process", "", "" ], [ "P40794-1", "bnk", "GO_0061572", "actin filament bundle organization", "biological_process", "", "" ], [ "P40794-1", "bnk", "GO_0005546", "phosphatidylinositol-4,5-bisphosphate binding", "molecular_function", "", "" ], [ "P40794-1", "bnk", "GO_0005547", "phosphatidylinositol-3,4,5-trisphosphate binding", "molecular_function", "", "" ], [ "P40794-1", "bnk", "GO_0005737", "cytoplasm", "cellular_component", "", "" ], [ "P40794-1", "bnk", "GO_0005884", "actin filament", "cellular_component", "", "" ], [ "P40794-1", "bnk", "GO_0007015", "actin filament organization", "biological_process", "", "" ], [ "P40794-1", "bnk", "GO_0051015", "actin filament binding", "molecular_function", "", "" ], [ "P40794-1", "bnk", "GO_0051017", "actin filament bundle assembly", "biological_process", "", "" ], [ "P40794-1", "bnk", "GO_0016476", "regulation of embryonic cell shape", "biological_process", "", "" ], [ "P40794-1", "bnk", "GO_0110069", "syncytial embryo cellularization", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0040034", "regulation of development, heterochronic", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0021782", "glial cell development", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0005615", "extracellular space", "cellular_component", "", "" ], [ "P40795-1", "fog", "GO_0005737", "cytoplasm", "cellular_component", "", "" ], [ "P40795-1", "fog", "GO_0007186", "G protein-coupled receptor signaling pathway", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0007399", "nervous system development", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0001664", "G protein-coupled receptor binding", "molecular_function", "", "" ], [ "P40795-1", "fog", "GO_0016331", "morphogenesis of embryonic epithelium", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0008360", "regulation of cell shape", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0007411", "axon guidance", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0048018", "receptor ligand activity", "molecular_function", "", "" ], [ "P40795-1", "fog", "GO_0000266", "mitochondrial fission", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0060662", "salivary gland cavitation", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0007498", "mesoderm development", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0003383", "apical constriction", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0007509", "mesoderm migration involved in gastrulation", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0043519", "regulation of myosin II filament organization", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0070252", "actin-mediated cell contraction", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0048383", "mesectoderm development", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0003384", "apical constriction involved in gastrulation", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0007370", "ventral furrow formation", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0007374", "posterior midgut invagination", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0007472", "wing disc morphogenesis", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0007476", "imaginal disc-derived wing morphogenesis", "biological_process", "", "" ], [ "P40795-1", "fog", "GO_0110072", "apical constriction involved in ventral furrow formation", "biological_process", "", "" ], [ "P40792-1", "Rac1", "GO_1904059", "regulation of locomotor rhythm", "biological_process", "", "" ], [ "P40792-1", "Rac1", "GO_0050770", "regulation of axonogenesis", "biological_process", "", "" ] ] }, "readme": "Name\n - Fruitfly Gene Ontology (GO)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2022-08-30T16:13:56.875825\n\nModified on\n - 2022-09-26T09:08:12.556119\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Gene Ontology (GO) dataset contains fruitfly [taxid:7227] Gene Ontology Id and name, categories and evidence information for UniProtKB canonical accessions. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - go id\n - go name\n - molecular function\n - biological process\n - cellular component\n - Gene Ontology (GO)\n\n Pipeline Steps\n - Step-1: The script extracts the GO Id, name, category and evidence from the triplestore of NT file and maps it to the UniProtKB canonical sequences. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_go_annotation.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_go_annotation.csv\n Name: fruitfly_protein_go_annotation.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/fruitfly_protein_go_annotation.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"11600\"\n Name: \"gene_symbol\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n Unique Values: \"11807\"\n Name: \"go_term_id\"\n Description: \"The Gene Ontology (GO) term unique alphanumeric identifier\"\n Unique Values: \"8842\"\n Name: \"go_term_label\"\n Description: \"The Gene Ontology (GO) name that is a word or string of words\"\n Unique Values: \"8842\"\n Name: \"go_term_category\"\n Description: \"\"The Gene Ontology (GO) domain to which the term belongs. There are three ontology domain in GO - cellular component\"\n Unique Values: \"3\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"1\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/fruitfly_protein_go_annotation.csv" }