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"19139490", "0", "uniprotkb" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "G48584BU", "protein_xref_glyconnect", "1536", "1", "glyconnect" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "G48584BU", "protein_xref_pubmed", "29741879", "1", "glyconnect" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_pubmed", "23090970", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_pubmed", "23090970", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_pubmed", "23090970", "0", "literature" ], [ "Q15223-1", "202", "N", "S", "NGT", "SGT", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-loss (NGT->SGT).", "biomuta", "202", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ] ] }, "readme": "Name\n - Human Cancer Mutation Loss of Glycosylation\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2021-10-15T15:32:16.971706\n\nModified on\n - 2022-09-26T09:08:12.730456\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_masterlist.csv\n Name: human_protein_mutation_cancer.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_protein_mutation_cancer.csv\n Name: human_proteoform_glycosylation_sites_carbbank.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_carbbank.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_gptwiki.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n Name: human_proteoform_glycosylation_sites_harvard.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n Name: human_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_literature.csv\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Name: human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Name: human_proteoform_glycosylation_sites_o_gluc.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_o_gluc.csv\n Name: human_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_tyr_o_linked.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_tyr_o_linked.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Name: aadict.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/misc/aadict.csv\n Output Subdomain\n Name: human_protein_mutation_cancer_glycosylation_loss.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv\n Name: human_protein_mutation_cancer_glycosylation_loss.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1789\"\n Name: \"mut_pos\"\n Description: \"\"\n Unique Values: \"1175\"\n Name: \"mut_ref_aa\"\n Description: \"\"\n Unique Values: \"9\"\n Name: \"mut_alt_aa\"\n Description: \"\"\n Unique Values: \"18\"\n Name: \"ref_motif\"\n Description: \"Reference motif\"\n Unique Values: \"53\"\n Name: \"alt_motif\"\n Description: \"Altered motif\"\n Unique Values: \"486\"\n Name: \"do_id\"\n Description: \"Disease Ontology identifier\"\n Unique Values: \"20\"\n Name: \"do_name\"\n Description: \"Disease Ontology term or name for the disease assigned to the Disease Ontology identifier\"\n Unique Values: \"20\"\n Name: \"mut_flags_score\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"mut_flags\"\n Description: \"\"\n Unique Values: \"678\"\n Name: \"mut_source\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"gly_pos\"\n Description: \"\"\n Unique Values: \"1138\"\n Name: \"gly_ref_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"412\"\n Name: \"gly_xref_key\"\n Description: \"\"\n Unique Values: \"12\"\n Name: \"gly_xref_id\"\n Description: \"\"\n Unique Values: \"2939\"\n Name: \"gly_flags_score\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"gly_source\"\n Description: \"\"\n Unique Values: \"8\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv" }