{
    "bcoid": "GLY_000609",
    "title": "Rat Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "",
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                "P18266-1",
                "Modulation of the glycogen synthase kinase-3 family by tyrosine phosphorylation.",
                "The EMBO journal",
                "1993 Feb",
                "Hughes K, Nikolakaki E, Plyte SE, Totty NF, Woodgett JR",
                "protein_xref_pubmed",
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                "P18266"
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                "Graded regulation of the Kv2.1 potassium channel by variable phosphorylation.",
                "Science (New York, N.Y.)",
                "2006 Aug 18",
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                "Phosphorylation of syndapin I F-BAR domain at two helix-capping motifs regulates membrane tubulation.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2012 Mar 6",
                "Quan A, Xue J, Wielens J, Smillie KJ, Anggono V, Parker MW, Cousin MA, Graham ME, Robinson PJ",
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                "Identification and characterization of the major phosphorylation sites of the B-type natriuretic peptide receptor.",
                "The Journal of biological chemistry",
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                "Biochemistry",
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                "FASEB journal : official publication of the Federation of American Societies for Experimental Biology",
                "2022 May",
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                "The Journal of biological chemistry",
                "2001 Apr 20",
                "El Kouhen R, Burd AL, Erickson-Herbrandson LJ, Chang CY, Law PY, Loh HH",
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                "11278523",
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                "Phosphorylation of Ser2078 modulates the Notch2 function in 32D cell differentiation.",
                "The Journal of biological chemistry",
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                "Ingles-Esteve J, Espinosa L, Milner LA, Caelles C, Bigas A",
                "protein_xref_pubmed",
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                "Nuclear multicatalytic proteinase subunit RRC3 is important for growth regulation in hepatocytes.",
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                "Benedict CM, Clawson GA",
                "protein_xref_pubmed",
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                "Bidirectional activity-dependent regulation of neuronal ion channel phosphorylation.",
                "The Journal of neuroscience : the official journal of the Society for Neuroscience",
                "2006 Dec 27",
                "Misonou H, Menegola M, Mohapatra DP, Guy LK, Park KS, Trimmer JS",
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                "Channels (Austin, Tex.)",
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                "Park KS, Mohapatra DP, Trimmer JS",
                "protein_xref_pubmed",
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            [
                "Q9JM80-1",
                "Transmembrane phosphoprotein Cbp positively regulates the activity of the carboxyl-terminal Src kinase, Csk.",
                "The Journal of biological chemistry",
                "2000 Sep 22",
                "Takeuchi S, Takayama Y, Ogawa A, Tamura K, Okada M",
                "protein_xref_pubmed",
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                "Phosphorylation of four amino acid residues in the carboxyl terminus of the rat somatostatin receptor subtype 3 is crucial for its desensitization and internalization.",
                "The Journal of biological chemistry",
                "1997 Sep 19",
                "Roth A, Kreienkamp HJ, Meyerhof W, Richter D",
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                "Nature communications",
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                "1999 Feb",
                "Abe MK, Kuo WL, Hershenson MB, Rosner MR",
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                "Post-translational modifications of rat liver mitochondrial outer membrane proteins identified by mass spectrometry.",
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                "Distler AM, Kerner J, Hoppel CL",
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                "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2006 May 2",
                "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA",
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                "Nature communications",
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                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
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                "Clathrin-mediated endocytosis of the beta-adrenergic receptor is regulated by phosphorylation/dephosphorylation of beta-arrestin1.",
                "The Journal of biological chemistry",
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                "Lin FT, Krueger KM, Kendall HE, Daaka Y, Fredericks ZL, Pitcher JA, Lefkowitz RJ",
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                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
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                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
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                "P63142-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
                "protein_xref_uniprotkb",
                "P63142"
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            [
                "P63142-1",
                "Homeostatic regulation of Kv1.2 potassium channel trafficking by cyclic AMP.",
                "The Journal of biological chemistry",
                "2008 Feb 8",
                "Connors EC, Ballif BA, Morielli AD",
                "protein_xref_pubmed",
                "18003609",
                "protein_xref_uniprotkb",
                "P63142"
            ],
            [
                "P31000-1",
                "Nestin promotes the phosphorylation-dependent disassembly of vimentin intermediate filaments during mitosis.",
                "Molecular biology of the cell",
                "2003 Apr",
                "Chou YH, Khuon S, Herrmann H, Goldman RD",
                "protein_xref_pubmed",
                "12686602",
                "protein_xref_uniprotkb",
                "P31000"
            ],
            [
                "P67999-1",
                "Regulation of the p70 S6 kinase by phosphorylation in vivo. Analysis using site-specific anti-phosphopeptide antibodies.",
                "The Journal of biological chemistry",
                "1998 Jun 26",
                "Weng QP, Kozlowski M, Belham C, Zhang A, Comb MJ, Avruch J",
                "protein_xref_pubmed",
                "9632736",
                "protein_xref_uniprotkb",
                "P67999"
            ],
            [
                "P04762-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
                "protein_xref_uniprotkb",
                "P04762"
            ],
            [
                "P28647-1",
                "Identification of threonine residues controlling the agonist-dependent phosphorylation and desensitization of the rat A(3) adenosine receptor.",
                "Molecular pharmacology",
                "2000 Mar",
                "Palmer TM, Stiles GL",
                "protein_xref_pubmed",
                "10692494",
                "protein_xref_uniprotkb",
                "P28647"
            ],
            [
                "P54645-1",
                "Identification of phosphorylation sites in AMP-activated protein kinase (AMPK) for upstream AMPK kinases and study of their roles by site-directed mutagenesis.",
                "The Journal of biological chemistry",
                "2003 Aug 1",
                "Woods A, Vertommen D, Neumann D, Turk R, Bayliss J, Schlattner U, Wallimann T, Carling D, Rider MH",
                "protein_xref_pubmed",
                "12764152",
                "protein_xref_uniprotkb",
                "P54645"
            ],
            [
                "Q62871-1",
                "Cytoplasmic dynein intermediate chain phosphorylation regulates binding to dynactin.",
                "The Journal of biological chemistry",
                "2001 Jul 13",
                "Vaughan PS, Leszyk JD, Vaughan KT",
                "protein_xref_pubmed",
                "11340075",
                "protein_xref_uniprotkb",
                "Q62871"
            ],
            [
                "P14925-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
                "protein_xref_uniprotkb",
                "P14925"
            ],
            [
                "P63142-1",
                "Clustering and activity tuning of Kv1 channels in myelinated hippocampal axons.",
                "The Journal of biological chemistry",
                "2011 Jul 22",
                "Gu C, Gu Y",
                "protein_xref_pubmed",
                "21602278",
                "protein_xref_uniprotkb",
                "P63142"
            ],
            [
                "P11915-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
                "protein_xref_uniprotkb",
                "P11915"
            ],
            [
                "P18910-1",
                "Phosphorylation of the kinase homology domain is essential for activation of the A-type natriuretic peptide receptor.",
                "Molecular and cellular biology",
                "1998 Apr",
                "Potter LR, Hunter T",
                "protein_xref_pubmed",
                "9528788",
                "protein_xref_uniprotkb",
                "P18910"
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            [
                "P18910-1",
                "Mass spectrometric identification of phosphorylation sites in guanylyl cyclase A and B.",
                "Biochemistry",
                "2010 Nov 30",
                "Yoder AR, Stone MD, Griffin TJ, Potter LR",
                "protein_xref_pubmed",
                "20977274",
                "protein_xref_uniprotkb",
                "P18910"
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            [
                "P62483-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
                "protein_xref_uniprotkb",
                "P62483"
            ],
            [
                "P62483-1",
                "Cdk-mediated phosphorylation of the Kvbeta2 auxiliary subunit regulates Kv1 channel axonal targeting.",
                "The Journal of cell biology",
                "2011 Mar 7",
                "Vacher H, Yang JW, Cerda O, Autillo-Touati A, Dargent B, Trimmer JS",
                "protein_xref_pubmed",
                "21357749",
                "protein_xref_uniprotkb",
                "P62483"
            ],
            [
                "P39052-1",
                "SRC-mediated phosphorylation of dynamin and cortactin regulates the `constitutive` endocytosis of transferrin.",
                "Molecular and cellular biology",
                "2010 Feb",
                "Cao H, Chen J, Krueger EW, McNiven MA",
                "protein_xref_pubmed",
                "19995918",
                "protein_xref_uniprotkb",
                "P39052"
            ],
            [
                "P16086-1",
                "Tyrosine phosphorylation regulates alpha II spectrin cleavage by calpain.",
                "Molecular and cellular biology",
                "2002 May",
                "Nicolas G, Fournier CM, Galand C, Malbert-Colas L, Bournier O, Kroviarski Y, Bourgeois M, Camonis JH, Dhermy D, Grandchamp B, Lecomte MC",
                "protein_xref_pubmed",
                "11971983",
                "protein_xref_uniprotkb",
                "P16086"
            ],
            [
                "Q9QZM5-1",
                "Abelson interacting protein 1 (Abi-1) is essential for dendrite morphogenesis and synapse formation.",
                "The EMBO journal",
                "2007 Mar 7",
                "Proepper C, Johannsen S, Liebau S, Dahl J, Vaida B, Bockmann J, Kreutz MR, Gundelfinger ED, Boeckers TM",
                "protein_xref_pubmed",
                "17304222",
                "protein_xref_uniprotkb",
                "Q9QZM5"
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            [
                "P70587-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
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                "P70587"
            ],
            [
                "P70587-1",
                "Association of calcium/calmodulin-dependent kinase II with developmentally regulated splice variants of the postsynaptic density protein densin-180.",
                "The Journal of biological chemistry",
                "2000 Aug 18",
                "Strack S, Robison AJ, Bass MA, Colbran RJ",
                "protein_xref_pubmed",
                "10827168",
                "protein_xref_uniprotkb",
                "P70587"
            ],
            [
                "Q64289-1",
                "Glucose induced MAPK signalling influences NeuroD1-mediated activation and nuclear localization.",
                "FEBS letters",
                "2002 Sep 25",
                "Petersen HV, Jensen JN, Stein R, Serup P",
                "protein_xref_pubmed",
                "12297313",
                "protein_xref_uniprotkb",
                "Q64289"
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            [
                "P16884-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
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                "P16884"
            ],
            [
                "D3ZUM2-1",
                "Phosphorylation at S548 as a Functional Switch of Sterile Alpha and TIR Motif-Containing 1 in Cerebral Ischemia/Reperfusion Injury in Rats.",
                "Molecular neurobiology",
                "2021 Feb",
                "Xue T, Sun Q, Zhang Y, Wu X, Shen H, Li X, Wu J, Li H, Wang Z, Chen G",
                "protein_xref_pubmed",
                "32968873",
                "protein_xref_uniprotkb",
                "D3ZUM2"
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                "Q9JK25-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
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                "Q9JK25"
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            [
                "Q9JK25-1",
                "Phosphorylation controls autoinhibition of cytoplasmic linker protein-170.",
                "Molecular biology of the cell",
                "2010 Aug 1",
                "Lee HS, Komarova YA, Nadezhdina ES, Anjum R, Peloquin JG, Schober JM, Danciu O, van Haren J, Galjart N, Gygi SP, Akhmanova A, Borisy GG",
                "protein_xref_pubmed",
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                "O35413-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
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                "O35413"
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                "P29067-1",
                "Phosphorylation of beta-arrestin2 regulates its function in internalization of beta(2)-adrenergic receptors.",
                "Biochemistry",
                "2002 Aug 27",
                "Lin FT, Chen W, Shenoy S, Cong M, Exum ST, Lefkowitz RJ",
                "protein_xref_pubmed",
                "12186555",
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            [
                "P33535-1",
                "Phosphorylation of the mu-opioid receptor at tyrosine 166 (Tyr3.51) in the DRY motif reduces agonist efficacy.",
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                "2010 Mar",
                "Clayton CC, Bruchas MR, Lee ML, Chavkin C",
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                "UREB1, a tyrosine phosphorylated nuclear protein, inhibits p53 transactivation.",
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                "Gu J, Dubner R, Fornace AJ Jr, Iadarola MJ",
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                "Inhibition of the Ca2+/calmodulin-dependent protein kinase I cascade by cAMP-dependent protein kinase.",
                "The Journal of biological chemistry",
                "1999 Apr 9",
                "Matsushita M, Nairn AC",
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                "Inhibitory cross-talk by cAMP kinase on the calmodulin-dependent protein kinase cascade.",
                "The Journal of biological chemistry",
                "1997 Jun 27",
                "Wayman GA, Tokumitsu H, Soderling TR",
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                "Phosphorylation of septin 3 on Ser-91 by cGMP-dependent protein kinase-I in nerve terminals.",
                "The Biochemical journal",
                "2004 Aug 1",
                "Xue J, Milburn PJ, Hanna BT, Graham ME, Rostas JA, Robinson PJ",
                "protein_xref_pubmed",
                "15107017",
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                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
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                "A calcium-dependent switch in a CREST-BRG1 complex regulates activity-dependent gene expression.",
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                "Qiu Z, Ghosh A",
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                "P32182-1",
                "Identification of DNA-dependent protein kinase as a cofactor for the forkhead transcription factor FoxA2.",
                "The Journal of biological chemistry",
                "2009 Jul 24",
                "Nock A, Ascano JM, Jones T, Barrero MJ, Sugiyama N, Tomita M, Ishihama Y, Malik S",
                "protein_xref_pubmed",
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                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
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            [
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            [
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            [
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            [
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                "protein_xref_uniprotkb",
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    },
    "readme": "Name\n   - Rat Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.2.1\n\nCreated on\n  - 2021-10-15T08:03:13.531431\n\nModified on\n   - 2023-03-14T16:27:29.522Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: rat_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"2070\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"126\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"39\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"126\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"125\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"126\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"2070\"",
    "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}
