{ "bcoid": "GLY_000608", "title": "Mouse Proteoform Phosphorylation Citations (UniProtKB)", "description": "", "filename": "mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Phosphorylation Citations UniProtKB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P97807-1...", "A tissue-spe..." ], [ "P45952-1...", "A tissue-spe..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P97807-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P97807" ], [ "P45952-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P45952" ], [ "Q61753-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q61753" ], [ "P0DP27-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P0DP27" ], [ "P0DP27-1", "Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain.", "Journal of proteome research", "2008 Jan", "Ballif BA, Carey GR, Sunyaev SR, Gygi SP", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "P0DP27" ], [ "Q63810-1", "Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain.", "Journal of proteome research", "2008 Jan", "Ballif BA, Carey GR, Sunyaev SR, Gygi SP", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "Q63810" ], [ "P05532-1", "Quantitative time-resolved phosphoproteomic analysis of mast cell signaling.", "Journal of immunology (Baltimore, Md. : 1950)", "2007 Nov 1", "Cao L, Yu K, Banh C, Nguyen V, Ritz A, Raphael BJ, Kawakami Y, Kawakami T, Salomon AR", "protein_xref_pubmed", "17947660", "protein_xref_uniprotkb", "P05532" ], [ "P0DP28-1", "Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain.", "Journal of proteome research", "2008 Jan", "Ballif BA, Carey GR, Sunyaev SR, Gygi SP", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "P0DP28" ], [ "P0DP28-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P0DP28" ], [ "P97352-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P97352" ], [ "P09242-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P09242" ], [ "P0DP26-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P0DP26" ], [ "P0DP26-1", "Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain.", "Journal of proteome research", "2008 Jan", "Ballif BA, Carey GR, Sunyaev SR, Gygi SP", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "P0DP26" ], [ "Q8BH04-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q8BH04" ], [ "Q7TSV4-1", "Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry.", "Molecular & cellular proteomics : MCP", "2009 May", "Sweet SM, Bailey CM, Cunningham DL, Heath JK, Cooper HJ", "protein_xref_pubmed", "19131326", "protein_xref_uniprotkb", "Q7TSV4" ], [ "Q7TSV4-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q7TSV4" ], [ "P17679-1", "Phosphorylation of the erythroid transcription factor GATA-1.", "The Journal of biological chemistry", "1994 Jun 17", "Crossley M, Orkin SH", "protein_xref_pubmed", "8206977", "protein_xref_uniprotkb", "P17679" ], [ "A0A0B4J1G0-1", "IgEb immune complexes activate macrophages through FcgammaRIV binding.", "Nature immunology", "2007 Jul", "Hirano M, Davis RS, Fine WD, Nakamura S, Shimizu K, Yagi H, Kato K, Stephan RP, Cooper MD", "protein_xref_pubmed", "17558411", "protein_xref_uniprotkb", "A0A0B4J1G0" ], [ "A0A0B4J1G0-1", "The phagosomal proteome in interferon-gamma-activated macrophages.", "Immunity", "2009 Jan 16", "Trost M, English L, Lemieux S, Courcelles M, Desjardins M, Thibault P", "protein_xref_pubmed", "19144319", "protein_xref_uniprotkb", "A0A0B4J1G0" ], [ "A2AAY5-1", "The novel adaptor protein Tks4 (SH3PXD2B) is required for functional podosome formation.", "Molecular biology of the cell", "2009 Mar", "Buschman MD, Bromann PA, Cejudo-Martin P, Wen F, Pass I, Courtneidge SA", "protein_xref_pubmed", "19144821", "protein_xref_uniprotkb", "A2AAY5" ], [ "E9Q0N2-1", "Tyrosine phosphorylation of R3 subtype receptor-type protein tyrosine phosphatases and their complex formations with Grb2 or Fyn.", "Genes to cells : devoted to molecular & cellular mechanisms", "2010 May", "Murata Y, Mori M, Kotani T, Supriatna Y, Okazawa H, Kusakari S, Saito Y, Ohnishi H, Matozaki T", "protein_xref_pubmed", "20398064", "protein_xref_uniprotkb", "E9Q0N2" ], [ "O35284-1", "Phosphorylation of BATF regulates DNA binding: a novel mechanism for AP-1 (activator protein-1) regulation.", "The Biochemical journal", "2003 Sep 1", "Deppmann CD, Thornton TM, Utama FE, Taparowsky EJ", "protein_xref_pubmed", "12809553", "protein_xref_uniprotkb", "O35284" ], [ "P13346-1", "Regulation of DeltaFosB stability by phosphorylation.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "2006 May 10", "Ulery PG, Rudenko G, Nestler EJ", "protein_xref_pubmed", "16687504", "protein_xref_uniprotkb", "P13346" ], [ "P15702-1", "Signaling through CD43 regulates CD4 T-cell trafficking.", "Blood", "2007 Oct 15", "Mody PD, Cannon JL, Bandukwala HS, Blaine KM, Schilling AB, Swier K, Sperling AI", "protein_xref_pubmed", "17638845", "protein_xref_uniprotkb", "P15702" ], [ "P15702-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P15702" ], [ "O70469-1", "Recruitment of Dok-R to the EGF receptor through its PTB domain is required for attenuation of Erk MAP kinase activation.", "Current biology : CB", "1999 Sep 23", "Jones N, Dumont DJ", "protein_xref_pubmed", "10508618", "protein_xref_uniprotkb", "O70469" ], [ "O88667-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "O88667" ], [ "P26231-1", "Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis.", "Journal of proteome research", "2008 Sep", "Zhou H, Ye M, Dong J, Han G, Jiang X, Wu R, Zou H", "protein_xref_pubmed", "18630941", "protein_xref_uniprotkb", "P26231" ], [ "P26231-1", "Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry.", "Molecular & cellular proteomics : MCP", "2009 May", "Sweet SM, Bailey CM, Cunningham DL, Heath JK, Cooper HJ", "protein_xref_pubmed", "19131326", "protein_xref_uniprotkb", "P26231" ], [ "P26231-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P26231" ], [ "O54885-1", "Sequential proteolytic processing of the triggering receptor expressed on 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"2009 May", "Sweet SM, Bailey CM, Cunningham DL, Heath JK, Cooper HJ", "protein_xref_pubmed", "19131326", "protein_xref_uniprotkb", "P18760" ], [ "P18760-1", "Comprehensive identification of phosphorylation sites in postsynaptic density preparations.", "Molecular & cellular proteomics : MCP", "2006 May", "Trinidad JC, Specht CG, Thalhammer A, Schoepfer R, Burlingame AL", "protein_xref_pubmed", "16452087", "protein_xref_uniprotkb", "P18760" ], [ "P18760-1", "A quantitative proteomic analysis of cofilin phosphorylation in myeloid cells and its modulation using the LIM kinase inhibitor Pyr1.", "PloS one", "2018", "Prudent R, Demoncheaux N, Diemer H, Collin-Faure V, Kapur R, Paublant F, Lafanechere L, Cianferani S, Rabilloud T", "protein_xref_pubmed", "30550596", "protein_xref_uniprotkb", "P18760" ], [ "P20491-1", "Quantitative time-resolved phosphoproteomic analysis of mast cell signaling.", "Journal of immunology (Baltimore, Md. : 1950)", "2007 Nov 1", "Cao L, Yu K, Banh C, Nguyen V, 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"Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q8R080" ], [ "Q8K2K6-4", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q8K2K6" ], [ "Q8K2K6-4", "Large-scale phosphorylation analysis of mouse liver.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 Jan 30", "Villen J, Beausoleil SA, Gerber SA, Gygi SP", "protein_xref_pubmed", "17242355", "protein_xref_uniprotkb", "Q8K2K6" ], [ "Q8K2K6-4", "The phagosomal proteome in interferon-gamma-activated macrophages.", "Immunity", "2009 Jan 16", "Trost M, English L, Lemieux S, Courcelles M, Desjardins M, Thibault P", "protein_xref_pubmed", "19144319", "protein_xref_uniprotkb", "Q8K2K6" ], [ "Q99N13-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q99N13" ], [ "Q9DCD5-1", "Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry.", "Molecular & cellular proteomics : MCP", "2009 May", "Sweet SM, Bailey CM, Cunningham DL, Heath JK, Cooper HJ", "protein_xref_pubmed", "19131326", "protein_xref_uniprotkb", "Q9DCD5" ], [ "Q9DCD5-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9DCD5" ], [ "E9Q612-1", "Tyrosine phosphorylation of R3 subtype receptor-type protein tyrosine phosphatases and their complex formations with Grb2 or Fyn.", "Genes to cells : devoted to molecular & cellular mechanisms", "2010 May", "Murata Y, Mori M, Kotani T, Supriatna Y, Okazawa H, Kusakari S, Saito Y, Ohnishi H, Matozaki T", "protein_xref_pubmed", "20398064", "protein_xref_uniprotkb", "E9Q612" ], [ "Q9D620-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9D620" ], [ "B2RY56-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "B2RY56" ], [ "Q9ERG0-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9ERG0" ], [ "Q8BTI8-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q8BTI8" ], [ "Q9QXM1-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q9QXM1" ], [ "Q8BGB2-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q8BGB2" ], [ "Q8BIZ6-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q8BIZ6" ], [ "Q8R1N0-1", "DNA-RNA hybrids contribute to the replication dependent genomic instability induced by Omcg1 deficiency.", "Cell cycle (Georgetown, Tex.)", "2011 Jan 1", "Houlard M, Artus J, Leguillier T, Vandormael-Pournin S, Cohen-Tannoudji M", "protein_xref_pubmed", "21191184", "protein_xref_uniprotkb", "Q8R1N0" ], [ "Q8R1N0-1", "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.", "Science (New York, N.Y.)", "2007 May 25", "Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER 3rd, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, Shiloh Y, Gygi SP, Elledge SJ", "protein_xref_pubmed", "17525332", "protein_xref_uniprotkb", "Q8R1N0" ], [ "P27661-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P27661" ], [ "Q8JZX9-1", "A tissue-specific atlas of mouse protein phosphorylation and expression.", "Cell", "2010 Dec 23", "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q8JZX9" ] ] }, "readme": "Name\n - Mouse Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2021-10-15T08:01:56.010001\n\nModified on\n - 2023-03-14T17:05:22.996Z\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n - Phosphorylation\n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n Output Subdomain\n Name: mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n Name: mouse_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"4365\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"300\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"90\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"284\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"300\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"300\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"4366\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv" }