{ "bcoid": "GLY_000604", "title": "Glycan Xref Reactome", "description": "-", "filename": "glycan_xref_reactome.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Xref Reactome" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Rattus norvegicus", "Rattus", "Saccharomyces cerevisiae", "Drosophila melanogaster", "Severe acute respiratory syndrome coronavirus 2", "Sus scrofa" ] }, "minitable": { "content": [ [ "G82576YO...", "R-ALL-220347..." ], [ "G82576YO...", "R-ALL-678424..." ] ], "headers": [ "glytoucan_ac...", "xref_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_key" } ], [ "G82576YO", "R-ALL-2203472", "glycan_xref_reactome" ], [ "G82576YO", "R-ALL-6784249", "glycan_xref_reactome" ], [ "G81533KY", "R-ALL-428639", "glycan_xref_reactome" ], [ "G81533KY", "R-ALL-4085414", "glycan_xref_reactome" ], [ "G81533KY", "R-ALL-428633", "glycan_xref_reactome" ], [ "G81533KY", "R-ALL-975925", "glycan_xref_reactome" ], [ "G74621DY", "R-ALL-188973", "glycan_xref_reactome" ], [ "G74621DY", "R-ALL-5653871", "glycan_xref_reactome" ], [ "G58161NS", "R-ALL-1605745", "glycan_xref_reactome" ], [ "G58161NS", "R-ALL-113780", "glycan_xref_reactome" ], [ "G58161NS", "R-ALL-70115", "glycan_xref_reactome" ], [ "G58161NS", "R-ALL-964746", "glycan_xref_reactome" ], [ "G58161NS", "R-ALL-70113", "glycan_xref_reactome" ], [ "G58161NS", "R-ALL-170829", "glycan_xref_reactome" ], [ "G70323CJ", "R-ALL-912281", "glycan_xref_reactome" ], [ "G70323CJ", "R-ALL-429635", "glycan_xref_reactome" ], [ "G70323CJ", "R-ALL-429579", "glycan_xref_reactome" ], [ "G70323CJ", "R-ALL-964752", "glycan_xref_reactome" ], [ "G70323CJ", "R-ALL-6799594", "glycan_xref_reactome" ], [ "G71142DF", "R-ALL-9683087", "glycan_xref_reactome" ], [ "G01550VL", "R-ALL-2090063", "glycan_xref_reactome" ], [ "G27025MB", "R-ALL-2186969", "glycan_xref_reactome" ], [ "G27025MB", "R-ALL-1605658", "glycan_xref_reactome" ], [ "G27025MB", "R-ALL-2981042", "glycan_xref_reactome" ], [ "G09546QO", "R-ALL-1605637", "glycan_xref_reactome" ], [ "G49108TO", "R-ALL-2855066", "glycan_xref_reactome" ], [ "G49108TO", "R-ALL-6788982", "glycan_xref_reactome" ], [ "G93924TT", "R-ALL-188995", "glycan_xref_reactome" ], [ "G93924TT", "R-ALL-29590", "glycan_xref_reactome" ], [ "G96370VA", "R-ALL-191103", "glycan_xref_reactome" ], [ "G57321FI", "R-ALL-2855095", "glycan_xref_reactome" ], [ "G61418DU", "R-ALL-5357725", "glycan_xref_reactome" ], [ "G96881BQ", "R-ALL-6787679", "glycan_xref_reactome" ], [ "G80384UV", "R-ALL-6786660", "glycan_xref_reactome" ], [ "G85196CF", "R-ALL-6787678", "glycan_xref_reactome" ], [ "G31080DL", "R-ALL-8955853", "glycan_xref_reactome" ], [ "G35674CY", "R-ALL-2142867", "glycan_xref_reactome" ], [ "G35674CY", "R-ALL-2162224", "glycan_xref_reactome" ], [ "G35674CY", "R-ALL-2142896", "glycan_xref_reactome" ], [ "G35674CY", "R-ALL-2160866", "glycan_xref_reactome" ], [ "G35674CY", "R-ALL-2160894", "glycan_xref_reactome" ], [ "G35674CY", "R-ALL-2160864", "glycan_xref_reactome" ], [ "G35674CY", "R-ALL-5693343", "glycan_xref_reactome" ], [ "G35674CY", "R-ALL-9014801", "glycan_xref_reactome" ], [ "G93575MM", "R-ALL-6781878", "glycan_xref_reactome" ], [ "G93575MM", "R-ALL-901055", "glycan_xref_reactome" ], [ "G63035DM", "R-ALL-901037", "glycan_xref_reactome" ], [ "G86385RC", "R-ALL-901046", "glycan_xref_reactome" ], [ "G80016QC", "R-ALL-2104995", "glycan_xref_reactome" ], [ "G28233ME", "R-ALL-8853396", "glycan_xref_reactome" ], [ "G28233ME", "R-ALL-6799543", "glycan_xref_reactome" ], [ "G51034LA", "R-ALL-8853369", "glycan_xref_reactome" ], [ "G90333CG", "R-ALL-8853719", "glycan_xref_reactome" ], [ "G00027MO", "R-ALL-6799577", "glycan_xref_reactome" ], [ "G03934XO", "R-ALL-8853378", "glycan_xref_reactome" ], [ "G25577BM", "R-ALL-6799540", "glycan_xref_reactome" ], [ "G86419OL", "R-ALL-8853374", "glycan_xref_reactome" ] ] }, "readme": "Name\n - Glycan Xref Reactome\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2021-10-15T07:11:59.137251\n\nModified on\n - 2022-09-26T09:08:12.627273\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - -\n\nDescription Domain\n Keywords\n - Glycan\n - Xref Reactome\n\n Pipeline Steps\n - Step-1: \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_masterlist.csv\n Name: glycan_xref_chebi.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_xref_chebi.csv\n Name: ChEBI2Reactome_PE_Pathway.txt\n URI: https:/data.glygen.org/ln2downloads/reactome/2023_07_13/ChEBI2Reactome_PE_Pathway.txt\n Output Subdomain\n Name: glycan_xref_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_xref_reactome.csv\n Name: glycan_xref_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_xref_reactome.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"30\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"57\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/glycan_xref_reactome.csv" }