{ "bcoid": "GLY_000603", "title": "Glycan Pathway Reactome", "description": "-", "filename": "glycan_pathway_reactome.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Pathway Reactome" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Rattus norvegicus", "Drosophila melanogaster", "Severe acute respiratory syndrome coronavirus 2", "Saccharomyces cerevisiae", "Rattus", "Sus scrofa" ] }, "minitable": { "content": [ [ "G71142DF...", "beta-D-gluco..." ], [ "G71142DF...", "beta-D-gluco..." ] ], "headers": [ "glytoucan_ac...", "compound_nam..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "compound_name" }, { "type": "string", "label": "reactome_pathway_id" }, { "type": "string", "label": "pathway_name" }, { "type": "string", "label": "species_scientific_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" } ], [ "G71142DF", "beta-D-glucose [endoplasmic reticulum lumen]", "R-HSA-9683686", "Maturation of spike protein", "Homo sapiens", "glycan_xref_reactome", "R-ALL-9683087" ], [ "G71142DF", "beta-D-glucose [endoplasmic reticulum lumen]", "R-HSA-9694548", "Maturation of spike protein", "Homo sapiens", "glycan_xref_reactome", "R-ALL-9683087" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-BTA-2024096", "HS-GAG degradation", "Bos taurus", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-CEL-2024096", "HS-GAG degradation", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-CFA-2024096", "HS-GAG degradation", "Canis familiaris", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-DDI-2024096", "HS-GAG degradation", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-DME-2024096", "HS-GAG degradation", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-DRE-2024096", "HS-GAG degradation", "Danio rerio", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-GGA-2024096", "HS-GAG degradation", "Gallus gallus", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-HSA-2024096", "HS-GAG degradation", "Homo sapiens", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-MMU-2024096", "HS-GAG degradation", "Mus musculus", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-RNO-2024096", "HS-GAG degradation", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-SSC-2024096", "HS-GAG degradation", "Sus scrofa", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G01550VL", "D-xylose [lysosomal lumen]", "R-XTR-2024096", "HS-GAG degradation", "Xenopus tropicalis", "glycan_xref_reactome", "R-ALL-2090063" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-BTA-1660662", "Glycosphingolipid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-BTA-1660662", "Glycosphingolipid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-BTA-4085001", "Sialic acid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-BTA-4085001", "Sialic acid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-BTA-4085001", "Sialic acid metabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-BTA-428643", "Organic anion transporters", "Bos taurus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-BTA-428643", "Organic anion transporters", "Bos taurus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-BTA-975577", "N-Glycan antennae elongation", "Bos taurus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-CFA-1660662", "Glycosphingolipid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-CFA-1660662", "Glycosphingolipid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-CFA-4085001", "Sialic acid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-CFA-4085001", "Sialic acid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-CFA-4085001", "Sialic acid metabolism", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-CFA-428643", "Organic anion transporters", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-CFA-428643", "Organic anion transporters", "Canis familiaris", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-CFA-975577", "N-Glycan antennae elongation", "Canis familiaris", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DDI-4085001", "Sialic acid metabolism", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DDI-4085001", "Sialic acid metabolism", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DDI-428643", "Organic anion transporters", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DDI-428643", "Organic anion transporters", "Dictyostelium discoideum", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DME-4085001", "Sialic acid metabolism", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-DME-4085001", "Sialic acid metabolism", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DME-4085001", "Sialic acid metabolism", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DME-428643", "Organic anion transporters", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DME-428643", "Organic anion transporters", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-DME-975577", "N-Glycan antennae elongation", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DRE-1660662", "Glycosphingolipid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DRE-1660662", "Glycosphingolipid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DRE-4085001", "Sialic acid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-DRE-4085001", "Sialic acid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DRE-4085001", "Sialic acid metabolism", "Danio rerio", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-DRE-428643", "Organic anion transporters", "Danio rerio", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-DRE-428643", "Organic anion transporters", "Danio rerio", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-DRE-975577", "N-Glycan antennae elongation", "Danio rerio", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-GGA-1660662", "Glycosphingolipid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-GGA-1660662", "Glycosphingolipid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-GGA-4085001", "Sialic acid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-GGA-4085001", "Sialic acid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-GGA-4085001", "Sialic acid metabolism", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-GGA-428643", "Organic anion transporters", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-GGA-428643", "Organic anion transporters", "Gallus gallus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-GGA-975577", "N-Glycan antennae elongation", "Gallus gallus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-HSA-1660662", "Glycosphingolipid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-HSA-1660662", "Glycosphingolipid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-HSA-4085001", "Sialic acid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-HSA-4085001", "Sialic acid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-HSA-4085001", "Sialic acid metabolism", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-HSA-428643", "Organic anion transporters", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-HSA-428643", "Organic anion transporters", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-HSA-5619035", "Defective SLC17A5 causes Salla disease (SD) and ISSD", "Homo sapiens", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-HSA-975577", "N-Glycan antennae elongation", "Homo sapiens", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-MMU-1660662", "Glycosphingolipid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-MMU-1660662", "Glycosphingolipid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-MMU-4085001", "Sialic acid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-MMU-4085001", "Sialic acid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-MMU-4085001", "Sialic acid metabolism", "Mus musculus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-MMU-428643", "Organic anion transporters", "Mus musculus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-MMU-428643", "Organic anion transporters", "Mus musculus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-MMU-975577", "N-Glycan antennae elongation", "Mus musculus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-RNO-1660662", "Glycosphingolipid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-RNO-1660662", "Glycosphingolipid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-RNO-4085001", "Sialic acid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [nucleoplasm]", "R-RNO-4085001", "Sialic acid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-4085414" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-RNO-4085001", "Sialic acid metabolism", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-RNO-428643", "Organic anion transporters", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-RNO-428643", "Organic anion transporters", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-RNO-975577", "N-Glycan antennae elongation", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-SSC-1660662", "Glycosphingolipid metabolism", "Sus scrofa", "glycan_xref_reactome", "R-ALL-428633" ], [ "G81533KY", "Neu5Ac [lysosomal lumen]", "R-SSC-1660662", "Glycosphingolipid metabolism", "Sus scrofa", "glycan_xref_reactome", "R-ALL-428639" ], [ "G81533KY", "Neu5Ac [cytosol]", "R-SSC-4085001", "Sialic acid metabolism", "Sus scrofa", "glycan_xref_reactome", "R-ALL-428633" ] ] }, "readme": "Name\n - Glycan Pathway Reactome\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2021-10-15T07:09:29.335203\n\nModified on\n - 2022-09-26T09:08:12.468986\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - -\n\nDescription Domain\n Keywords\n - Glycan\n - Pathway\n - Reactome\n\n Pipeline Steps\n - Step-1: \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_xref_chebi.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_xref_chebi.csv\n Name: ChEBI2Reactome_PE_Pathway.txt\n URI: https:/data.glygen.org/ln2downloads/reactome/2023_07_13/ChEBI2Reactome_PE_Pathway.txt\n Output Subdomain\n Name: glycan_pathway_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_pathway_reactome.csv\n Name: glycan_pathway_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_pathway_reactome.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"30\"\n Name: \"compound_name\"\n Description: \"\"\n Unique Values: \"57\"\n Name: \"reactome_pathway_id\"\n Description: \"\"\n Unique Values: \"430\"\n Name: \"pathway_name\"\n Description: \"\"\n Unique Values: \"58\"\n Name: \"species_scientific_name\"\n Description: \"\"\n Unique Values: \"15\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"57\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/glycan_pathway_reactome.csv" }