{ "bcoid": "GLY_000592", "title": "Rat Reaction Participants (Reactome)", "description": "", "filename": "rat_protein_participants_reactome.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Reaction Participants (Reactome)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "R-RNO-160472...", "R-RNO-160437..." ], [ "R-RNO-160472...", "R-RNO-160437..." ] ], "headers": [ "reaction_id...", "participant_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "reaction_id" }, { "type": "string", "label": "participant_id" }, { "type": "string", "label": "participant_name" }, { "type": "string", "label": "role" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_type" } ], [ "R-RNO-1604722", "R-RNO-1604376", "MMP9(20-707) [extracellular region]", "input", "P50282", "UniProt" ], [ 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"11533283", "PubChem Substance" ], [ "R-RNO-1237325", "R-ALL-113528", "CO2 [cytosol]", "input", "HMDB0001967", "HMDB Metabolite" ], [ "R-RNO-1237325", "R-ALL-29368", "O2 [cytosol]", "output", "8145133", "PubChem Substance" ], [ "R-RNO-1237325", "R-ALL-29368", "O2 [cytosol]", "output", "C00007", "COMPOUND" ], [ "R-RNO-1237325", "R-ALL-29368", "O2 [cytosol]", "output", "HMDB0001377", "HMDB Metabolite" ], [ "R-RNO-1237325", "R-ALL-29368", "O2 [cytosol]", "output", "15379", "ChEBI" ], [ "R-RNO-917811", "R-ALL-917882", "e- [endosome membrane]", "input", "10545", "ChEBI" ], [ "R-RNO-917811", "R-ALL-917966", "Fe3+ [endosome lumen]", "input", "29034", "ChEBI" ], [ "R-RNO-917811", "R-ALL-917966", "Fe3+ [endosome lumen]", "input", "C14819", "COMPOUND" ], [ "R-RNO-917811", "R-ALL-917966", "Fe3+ [endosome lumen]", "input", "HMDB0015531", "HMDB Metabolite" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "D3ZE20", "UniProt" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "2319357", "RGD" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "ENSRNOP00000055183", "Ensembl" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "ENSRNOG00000017146", "Ensembl" ], [ "R-RNO-4551451", "R-RNO-2025953", "phospho-Nfatc1 [cytosol]", "input", "ENSRNOT00000058382", "Ensembl" ], [ "R-RNO-429101", "R-ALL-429130", "Ins [extracellular region]", "input", "C00137", "COMPOUND" ], [ "R-RNO-429101", "R-ALL-429130", "Ins [extracellular region]", "input", "17268", "ChEBI" ], [ "R-RNO-429101", "R-ALL-429130", "Ins [extracellular region]", "input", "HMDB0000211", "HMDB Metabolite" ], [ "R-RNO-429101", "R-ALL-429130", "Ins [extracellular region]", "input", "000100018867", "ZINC" ], [ "R-RNO-193816", "R-ALL-192194", "Cholest-5-ene-3beta,7alpha,27-triol [endoplasmic reticulum membrane]", "input", "18431", "ChEBI" ], [ "R-RNO-193816", "R-ALL-192194", "Cholest-5-ene-3beta,7alpha,27-triol [endoplasmic reticulum membrane]", "input", "000004097088", "ZINC" ], [ "R-RNO-193816", "R-ALL-192194", "Cholest-5-ene-3beta,7alpha,27-triol [endoplasmic reticulum membrane]", "input", "000004097087", "ZINC" ], [ "R-RNO-193816", "R-ALL-192194", "Cholest-5-ene-3beta,7alpha,27-triol [endoplasmic reticulum membrane]", "input", "HMDB0006281", "HMDB Metabolite" ], [ "R-RNO-469659", "R-ALL-469662", "DHTEST [cytosol]", "output", "16330", "ChEBI" ], [ "R-RNO-469659", "R-ALL-469662", "DHTEST [cytosol]", "output", "000003814360", "ZINC" ], [ "R-RNO-469659", "R-ALL-469662", "DHTEST [cytosol]", "output", "C03917", "COMPOUND" ], [ "R-RNO-469659", "R-ALL-469662", "DHTEST [cytosol]", "output", "HMDB0002961", "HMDB Metabolite" ], [ "R-RNO-5696101", "R-ALL-5362565", "9cRAL [cytosol]", "input", "78273", "ChEBI" ], [ "R-RNO-5696101", "R-ALL-5362565", "9cRAL [cytosol]", "input", "HMDB0006218", "HMDB Metabolite" ], [ "R-RNO-5696101", "R-ALL-5362565", "9cRAL [cytosol]", "input", "000022066345", "ZINC" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "C00029", "COMPOUND" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "58367", "ChEBI" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "000008551096", "ZINC" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "000008215472", "ZINC" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "C00001514", "KNApSAcK" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "44229134", "PubChem Compound" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "C00029", "KEGG Gene" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "133-89-1", "CAS" ], [ "R-RNO-3781024", "R-ALL-29410", "UDP-D-glucose(2-) [cytosol]", "input", "UDP-GLUCOSE", "AraCyc" ], [ "R-RNO-196840", "R-ALL-196834", "PPC [cytosol]", "input", "C04352", "COMPOUND" ], [ "R-RNO-196840", "R-ALL-196834", "PPC [cytosol]", "input", "59458", "ChEBI" ], [ "R-RNO-196840", "R-ALL-196834", "PPC [cytosol]", "input", "000003869303", "ZINC" ], [ "R-RNO-192178", "R-ALL-192060", "24OH-CHOL [endoplasmic reticulum membrane]", "input", "C13550", "COMPOUND" ], [ "R-RNO-192178", "R-ALL-192060", "24OH-CHOL [endoplasmic reticulum membrane]", "input", "34310", "ChEBI" ], [ "R-RNO-192178", "R-ALL-192060", "24OH-CHOL [endoplasmic reticulum membrane]", "input", "000002386791", "ZINC" ], [ "R-RNO-192178", "R-ALL-192060", "24OH-CHOL [endoplasmic reticulum membrane]", "input", "HMDB0001419", "HMDB Metabolite" ] ] }, "readme": "Name\n - Rat Reaction Participants (Reactome)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2021-10-07T14:35:34.045437\n\nModified on\n - 2022-09-26T09:08:12.474565\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: database_accession.tsv\n URI: https:/data.glygen.org/ln2downloads/chebi/2023_10_11/database_accession.tsv\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_participants_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_participants_reactome.csv\n Name: rat_protein_participants_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_participants_reactome.stat.csv\n\nFields\n Name: \"reaction_id\"\n Description: \"The identifier assigned to a reaction in Reactome database\"\n Unique Values: \"6042\"\n Name: \"participant_id\"\n Description: \"\"\n Unique Values: \"5734\"\n Name: \"participant_name\"\n Description: \"\"\n Unique Values: \"3204\"\n Name: \"role\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"10673\"\n Name: \"xref_type\"\n Description: \"\"\n Unique Values: \"41\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/rat_protein_participants_reactome.csv" }