{ "bcoid": "GLY_000575", "title": "Human Proteoform Glycation Citations (UniProtKB)", "description": "", "filename": "human_proteoform_citations_glycation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Proteoform" ], "tag": [ "Glycation Citations (UniProtKB)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P68871-1...", "Sites of non..." ], [ "P61769-1...", "Glycation of..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P68871-1", "Sites of nonenzymatic glycosylation of human hemoglobin A.", "The Journal of biological chemistry", "1980 Apr 10", "Shapiro R, McManus MJ, Zalut C, Bunn HF", "protein_xref_pubmed", "7358733", "protein_xref_uniprotkb_gly", "P68871" ], [ "P61769-1", "Glycation of human beta 2-microglobulin in patients with hemodialysis-associated amyloidosis: identification of the glycated sites.", "Biochemistry", "1994 Oct 11", "Miyata T, Inagi R, Wada Y, Ueda Y, Iida Y, Takahashi M, Taniguchi N, Maeda K", "protein_xref_pubmed", "7918443", "protein_xref_uniprotkb_gly", "P61769" ], [ "P10636-1", "Characterization of in vitro glycation sites of tau.", "Journal of neurochemistry", "1997 Oct", "Nacharaju P, Ko L, Yen SH", "protein_xref_pubmed", "9326300", "protein_xref_uniprotkb_gly", "P10636" ], [ "P69905-1", "Sites of nonenzymatic glycosylation of human hemoglobin A.", "The Journal of biological chemistry", "1980 Apr 10", "Shapiro R, McManus MJ, Zalut C, Bunn HF", "protein_xref_pubmed", "7358733", "protein_xref_uniprotkb_gly", "P69905" ], [ "P02768-1", "Enzymatic digestion and mass spectrometry in the study of advanced glycation end products/peptides.", "Journal of the American Society for Mass Spectrometry", "2004 Apr", "Lapolla A, Fedele D, Reitano R, Arico NC, Seraglia R, Traldi P, Marotta E, Tonani R", "protein_xref_pubmed", "15047055", "protein_xref_uniprotkb_gly", "P02768" ], [ "P02647-1", "The preferential site of non-enzymatic glycation of human apolipoprotein A-I in vivo.", "Clinica chimica acta; international journal of clinical chemistry", "1993 Aug 31", "Calvo C, Ulloa N, Campos M, Verdugo C, Ayrault-Jarrier M", "protein_xref_pubmed", "8261628", "protein_xref_uniprotkb_gly", "P02647" ], [ "P07738-1", "Human erythrocyte bisphosphoglycerate mutase: inactivation by glycation in vivo and in vitro.", "Journal of biochemistry", "1998 Dec 1", "Fujita T, Suzuki K, Tada T, Yoshihara Y, Hamaoka R, Uchida K, Matuo Y, Sasaki T, Hanafusa T, Taniguchi N", "protein_xref_pubmed", "9832630", "protein_xref_uniprotkb_gly", "P07738" ], [ "P02768-1", "The principal site of nonenzymatic glycosylation of human serum albumin in vivo.", "The Journal of biological chemistry", "1983 May 25", "Garlick RL, Mazer JS", "protein_xref_pubmed", "6853480", "protein_xref_uniprotkb_gly", "P02768" ], [ "P02768-1", "Nonenzymatic glycosylation of human serum albumin alters its conformation and function.", "The Journal of biological chemistry", "1984 Mar 25", "Shaklai N, Garlick RL, Bunn HF", "protein_xref_pubmed", "6706980", "protein_xref_uniprotkb_gly", "P02768" ], [ "P02768-1", "Nonenzymatic glycosylation of albumin in vivo. Identification of multiple glycosylated sites.", "The Journal of biological chemistry", "1986 Oct 15", "Iberg N, Fluckiger R", "protein_xref_pubmed", "3759977", "protein_xref_uniprotkb_gly", "P02768" ], [ "P00751-1", "The principal site of glycation of human complement factor B.", "The Biochemical journal", "1991 Mar 1", "Niemann MA, Bhown AS, Miller EJ", "protein_xref_pubmed", "2006911", "protein_xref_uniprotkb_gly", "P00751" ], [ "Q16236-1", "The Oncogenic Action of NRF2 Depends on De-glycation by Fructosamine-3-Kinase.", "Cell", "2019 Aug 8", "Sanghvi VR, Leibold J, Mina M, Mohan P, Berishaj M, Li Z, Miele MM, Lailler N, Zhao C, de Stanchina E, Viale A, Akkari L, Lowe SW, Ciriello G, Hendrickson RC, Wendel HG", "protein_xref_pubmed", "31398338", "protein_xref_uniprotkb_gly", "Q16236" ], [ "P68871-1", "The glycosylation of hemoglobin: relevance to diabetes mellitus.", "Science (New York, N.Y.)", "1978 Apr 7", "Bunn HF, Gabbay KH, Gallop PM", "protein_xref_pubmed", "635569", "protein_xref_uniprotkb_gly", "P68871" ], [ "P02649-1", "Glycation of apolipoprotein E impairs its binding to heparin: identification of the major glycation site.", "Biochimica et biophysica acta", "1999 Aug 30", "Shuvaev VV, Fujii J, Kawasaki Y, Itoh H, Hamaoka R, Barbier A, Ziegler O, Siest G, Taniguchi N", "protein_xref_pubmed", "10452964", "protein_xref_uniprotkb_gly", "P02649" ], [ "P08294-1", "The site of nonenzymic glycation of human extracellular-superoxide dismutase in vitro.", "Free radical biology & medicine", "1992 Sep", "Adachi T, Ohta H, Hayashi K, Hirano K, Marklund SL", "protein_xref_pubmed", "1505778", "protein_xref_uniprotkb_gly", "P08294" ], [ "P13987-1", "Molecular basis for a link between complement and the vascular complications of diabetes.", "Proceedings of the National Academy of Sciences of the United States of America", "2000 May 9", "Acosta J, Hettinga J, Fluckiger R, Krumrei N, Goldfine A, Angarita L, Halperin J", "protein_xref_pubmed", "10805801", "protein_xref_uniprotkb_gly", "P13987" ] ] }, "readme": "Name\n - Human Proteoform Glycation Citations (UniProtKB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2021-06-04T12:34:52.072705\n\nModified on\n - 2023-03-14T17:01:29.034Z\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nDescription Domain\n\n Pipeline Steps\n - Step--1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycation_sites_uniprotkb.csv\n Output Subdomain\n Name: human_proteoform_citations_glycation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycation_sites_uniprotkb.csv\n Name: human_proteoform_citations_glycation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"15\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"12\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"15\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"15\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"15\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"12\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycation_sites_uniprotkb.csv" }