{ "bcoid": "GLY_000561", "title": "Mouse Proteoform Glycosylation Citations (UniProtKB)", "description": "", "filename": "mouse_proteoform_citations_glycosylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "status": [ "Reviewed" ] }, "minitable": { "content": [ [ "Q9ES57-1...", "Structures o..." ], [ "P28665-1...", "Enhanced ana..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "Q9ES57-1", "Structures of CD200/CD200 receptor family and implications for topology, regulation, and evolution.", "Structure (London, England : 1993)", "2013 May 7", "Hatherley D, Lea SM, Johnson S, Barclay AN", "protein_xref_pubmed", "23602662", "protein_xref_uniprotkb_gly", "Q9ES57", "" ], [ "P28665-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "P28665", "" ], [ "P06802-1", "Crystal structure of Enpp1, an extracellular glycoprotein involved in bone mineralization and insulin signaling.", "Proceedings of the National Academy of Sciences of the United States of America", "2012 Oct 16", "Kato K, Nishimasu H, Okudaira S, Mihara E, Ishitani R, Takagi J, Aoki J, Nureki O", "protein_xref_pubmed", "23027977", "protein_xref_uniprotkb_gly", "P06802", "" ], [ "P06802-1", "Structure of NPP1, an ectonucleotide pyrophosphatase/phosphodiesterase involved in tissue calcification.", "Structure (London, England : 1993)", "2012 Nov 7", "Jansen S, Perrakis A, Ulens C, Winkler C, Andries M, Joosten RP, Van Acker M, Luyten FP, Moolenaar WH, Bollen M", "protein_xref_pubmed", "23041369", "protein_xref_uniprotkb_gly", "P06802", "" ], [ "P52800-1", "Crystal structure of an ephrin ectodomain.", "Developmental cell", "2001 Jul", "Toth J, Cutforth T, Gelinas AD, Bethoney KA, Bard J, Harrison CJ", "protein_xref_pubmed", "11703926", "protein_xref_uniprotkb_gly", "P52800", "" ], [ "Q62192-1", "Crystal structures of mouse and human RP105/MD-1 complexes reveal unique dimer organization of the toll-like receptor family.", "Journal of molecular biology", "2011 Nov 4", "Ohto U, Miyake K, Shimizu T", "protein_xref_pubmed", "21959264", "protein_xref_uniprotkb_gly", "Q62192", "" ], [ "Q01705-1", "Deciphering the Fringe-Mediated Notch Code: Identification of Activating and Inhibiting Sites Allowing Discrimination between Ligands.", "Developmental cell", "2017 Jan 23", "Kakuda S, Haltiwanger RS", "protein_xref_pubmed", "28089369", "protein_xref_uniprotkb_gly", "Q01705", "" ], [ "Q01705-1", "O-glucose trisaccharide is present at high but variable stoichiometry at multiple sites on mouse Notch1.", "The Journal of biological chemistry", "2011 Sep 9", "Rana NA, Nita-Lazar A, Takeuchi H, Kakuda S, Luther KB, Haltiwanger RS", "protein_xref_pubmed", "21757702", "protein_xref_uniprotkb_gly", "Q01705", "" ], [ "P97290-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "P97290", "" ], [ "P97290-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "P97290", "" ], [ "Q6DYE8-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q6DYE8", "" ], [ "Q8CG16-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "Q8CG16", "" ], [ "Q60751-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q60751", "" ], [ "P40237-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "P40237", "" ], [ "Q8BGC9-1", "Identification and characterization of novel members of the CREG family, putative secreted glycoproteins expressed specifically in brain.", "Genomics", "2002 Nov", "Kunita R, Otomo A, Ikeda JE", "protein_xref_pubmed", "12408961", "protein_xref_uniprotkb_gly", "Q8BGC9", "" ], [ "A6X935-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "A6X935", "" ], [ "A6X935-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "A6X935", "" ], [ "Q91ZX7-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "Q91ZX7", "" ], [ "P19221-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "P19221", "" ], [ "O35598-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "O35598", "" ], [ "P21995-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P21995", "" ], [ "P11499-1", "Mapping of O-GlcNAc sites of 20 S proteasome subunits and Hsp90 by a novel biotin-cystamine tag.", "Molecular & cellular proteomics : MCP", "2012 Aug", "Overath T, Kuckelkorn U, Henklein P, Strehl B, Bonar D, Kloss A, Siele D, Kloetzel PM, Janek K", "protein_xref_pubmed", "22556278", "protein_xref_uniprotkb_gly", "P11499", "" ], [ "P59384-1", "Biosynthesis and expression of a disintegrin-like and metalloproteinase domain with thrombospondin-1 repeats-15: a novel versican-cleaving proteoglycanase.", "The Journal of biological chemistry", "2013 Dec 27", "Dancevic CM, Fraser FW, Smith AD, Stupka N, Ward AC, McCulloch DR", "protein_xref_pubmed", "24220035", "protein_xref_uniprotkb_gly", "P59384", "" ], [ "Q09163-1", "Glycosylation analysis and protein structure determination of murine fetal antigen 1 (mFA1)--the circulating gene product of the delta-like protein (dlk), preadipocyte factor 1 (Pref-1) and stromal-cell-derived protein 1 (SCP-1) cDNAs.", "European journal of biochemistry", "1997 Mar 1", "Krogh TN, Bachmann E, Teisner B, Skjodt K, Hojrup P", "protein_xref_pubmed", "9118998", "protein_xref_uniprotkb_gly", "Q09163", "" ], [ "Q8BTJ4-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8BTJ4", "" ], [ "Q3TCN2-1", "Molecular characterization of the hypothetical 66.3-kDa protein in mouse: lysosomal targeting, glycosylation, processing and tissue distribution.", "FEBS letters", "2006 Oct 16", "Deuschl F, Kollmann K, von Figura K, Lubke T", "protein_xref_pubmed", "17007843", "protein_xref_uniprotkb_gly", "Q3TCN2", "" ], [ "Q3TCN2-1", "De novo sulfur SAD phasing of the lysosomal 66.3 kDa protein from mouse.", "Acta crystallographica. Section D, Biological crystallography", "2009 Mar", "Lakomek K, Dickmanns A, Mueller U, Kollmann K, Deuschl F, Berndt A, Lubke T, Ficner R", "protein_xref_pubmed", "19237744", "protein_xref_uniprotkb_gly", "Q3TCN2", "" ], [ "Q64726-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "Q64726", "" ], [ "Q6PEM8-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q6PEM8", "" ], [ "Q8K385-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8K385", "" ], [ "Q64455-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q64455", "" ], [ "Q8R5M8-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8R5M8", "" ], [ "Q8R5M8-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "Q8R5M8", "" ], [ "Q8R5M8-1", "N-glycosylation at the SynCAM (synaptic cell adhesion molecule) immunoglobulin interface modulates synaptic adhesion.", "The Journal of biological chemistry", "2010 Nov 5", "Fogel AI, Li Y, Giza J, Wang Q, Lam TT, Modis Y, Biederer T", "protein_xref_pubmed", "20739279", "protein_xref_uniprotkb_gly", "Q8R5M8", "" ], [ "O70458-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "O70458", "" ], [ "P56695-1", "Endoplasmic reticulum stress and N-glycosylation modulate expression of WFS1 protein.", "Biochemical and biophysical research communications", "2004 Dec 3", "Yamaguchi S, Ishihara H, Tamura A, Yamada T, Takahashi R, Takei D, Katagiri H, Oka Y", "protein_xref_pubmed", "15522226", "protein_xref_uniprotkb_gly", "P56695", "" ], [ "Q8VE98-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8VE98", "" ], [ "Q8VE98-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "Q8VE98", "" ], [ "P49582-1", "NACHO Engages N-Glycosylation ER Chaperone Pathways for alpha7 Nicotinic Receptor Assembly.", "Cell reports", "2020 Aug 11", "Kweon HJ, Gu S, Witham E, Dhara M, Yu H, Mandon ED, Jawhari A, Bredt DS", "protein_xref_pubmed", "32783947", "protein_xref_uniprotkb_gly", "P49582", "" ], [ "Q07113-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q07113", "" ], [ "P11688-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "P11688", "" ], [ "P11688-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P11688", "" ], [ "Q3UDW8-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q3UDW8", "" ], [ "Q8BWU1-1", "The CNS glycoprotein Shadoo has PrP(C)-like protective properties and displays reduced levels in prion infections.", "The EMBO journal", "2007 Sep 5", "Watts JC, Drisaldi B, Ng V, Yang J, Strome B, Horne P, Sy MS, Yoong L, Young R, Mastrangelo P, Bergeron C, Fraser PE, Carlson GA, Mount HT, Schmitt-Ulms G, Westaway D", "protein_xref_pubmed", "17703189", "protein_xref_uniprotkb_gly", "Q8BWU1", "" ], [ "Q60841-1", "Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 Jun 12", "Yasui N, Nogi T, Kitao T, Nakano Y, Hattori M, Takagi J", "protein_xref_pubmed", "17548821", "protein_xref_uniprotkb_gly", "Q60841", "" ], [ "P20239-1", "Structural characterization of native mouse zona pellucida proteins using mass spectrometry.", "The Journal of biological chemistry", "2003 Sep 5", "Boja ES, Hoodbhoy T, Fales HM, Dean J", "protein_xref_pubmed", "12799386", "protein_xref_uniprotkb_gly", "P20239", "" ], [ "O88737-1", "O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry.", "Molecular & cellular proteomics : MCP", "2006 May", "Vosseller K, Trinidad JC, Chalkley RJ, Specht CG, Thalhammer A, Lynn AJ, Snedecor JO, Guan S, Medzihradszky KF, Maltby DA, Schoepfer R, Burlingame AL", "protein_xref_pubmed", "16452088", "protein_xref_uniprotkb_gly", "O88737", "" ], [ "Q8BKG3-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8BKG3", "" ], [ "E9Q9F6-1", "Structure of a mammalian sperm cation channel complex.", "Nature", "2021 Jul", "Lin S, Ke M, Zhang Y, Yan Z, Wu J", "protein_xref_pubmed", "34225353", "protein_xref_uniprotkb_gly", "E9Q9F6", "" ], [ "Q01339-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "Q01339", "" ], [ "P19137-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P19137", "" ], [ "Q9Z1M0-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9Z1M0", "" ], [ "Q9JLB4-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9JLB4", "" ], [ "Q9CQ88-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9CQ88", "" ], [ "Q80UL9-1", "The molecular interaction of CAR and JAML recruits the central cell signal transducer PI3K.", "Science (New York, N.Y.)", "2010 Sep 3", "Verdino P, Witherden DA, Havran WL, Wilson IA", "protein_xref_pubmed", "20813955", "protein_xref_uniprotkb_gly", "Q80UL9", "" ], [ "P01898-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "P01898", "" ], [ "Q8VC69-1", "Role of glycosylation in the organic anion transporter OAT1.", "The Journal of biological chemistry", "2004 Apr 9", "Tanaka K, Xu W, Zhou F, You G", "protein_xref_pubmed", "14749323", "protein_xref_uniprotkb_gly", "Q8VC69", "" ], [ "Q9QWK4-1", "Modification of N-glycosylation modulates the secretion and lipolytic function of apoptosis inhibitor of macrophage (AIM).", "FEBS letters", "2012 Oct 19", "Mori M, Kimura H, Iwamura Y, Arai S, Miyazaki T", "protein_xref_pubmed", "23236605", "protein_xref_uniprotkb_gly", "Q9QWK4", "" ], [ "Q3UUQ7-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q3UUQ7", "" ], [ "O70362-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "O70362", "" ], [ "P43406-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "P43406", "" ], [ "Q9R0E1-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9R0E1", "" ], [ "Q8BGN3-1", "Structure and biological function of ENPP6, a choline-specific glycerophosphodiester-phosphodiesterase.", "Scientific reports", "2016 Feb 18", "Morita J, Kano K, Kato K, Takita H, Sakagami H, Yamamoto Y, Mihara E, Ueda H, Sato T, Tokuyama H, Arai H, Asou H, Takagi J, Ishitani R, Nishimasu H, Nureki O, Aoki J", "protein_xref_pubmed", "26888014", "protein_xref_uniprotkb_gly", "Q8BGN3", "" ], [ "Q8BWC0-1", "The two-pore channel TPCN2 mediates NAADP-dependent Ca(2+)-release from lysosomal stores.", "Pflugers Archiv : European journal of physiology", "2009 Sep", "Zong X, Schieder M, Cuny H, Fenske S, Gruner C, Rotzer K, Griesbeck O, Harz H, Biel M, Wahl-Schott C", "protein_xref_pubmed", "19557428", "protein_xref_uniprotkb_gly", "Q8BWC0", "" ], [ "O35298-1", "Crystal structure of the mammalian lipopolysaccharide detoxifier.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 Jan 30", "Gorelik A, Illes K, Nagar B", "protein_xref_pubmed", "29343645", "protein_xref_uniprotkb_gly", "O35298", "" ], [ "Q3TDQ1-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q3TDQ1", "" ], [ "O70255-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "O70255", "" ], [ "P28843-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P28843", "" ], [ "Q62313-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q62313", "" ], [ "P33587-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "P33587", "" ], [ "P13597-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P13597", "" ], [ "P41233-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P41233", "" ], [ "Q8R2Y2-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8R2Y2", "" ], [ "Q9R098-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "Q9R098", "" ], [ "A2ARV4-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "A2ARV4", "" ], [ "P10493-1", "Structure and localization of O- and N-linked oligosaccharide chains on basement membrane protein nidogen.", "Matrix (Stuttgart, Germany)", "1993 May", "Fujiwara S, Shinkai H, Mann K, Timpl R", "protein_xref_pubmed", "8326911", "protein_xref_uniprotkb_gly", "P10493", "" ], [ "Q9R1P4-1", "Mapping of O-GlcNAc sites of 20 S proteasome subunits and Hsp90 by a novel biotin-cystamine tag.", "Molecular & cellular proteomics : MCP", "2012 Aug", "Overath T, Kuckelkorn U, Henklein P, Strehl B, Bonar D, Kloss A, Siele D, Kloetzel PM, Janek K", "protein_xref_pubmed", "22556278", "protein_xref_uniprotkb_gly", "Q9R1P4", "" ], [ "Q99MB1-1", "Structural basis of toll-like receptor 3 signaling with double-stranded RNA.", "Science (New York, N.Y.)", "2008 Apr 18", "Liu L, Botos I, Wang Y, Leonard JN, Shiloach J, Segal DM, Davies DR", "protein_xref_pubmed", "18420935", "protein_xref_uniprotkb_gly", "Q99MB1", "" ], [ "Q8JZZ7-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "Q8JZZ7", "" ], [ "Q8JZZ7-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8JZZ7", "" ], [ "Q6S5C2-1", "Post-translational modifications of the gamma-subunit affect intracellular trafficking and complex assembly of GlcNAc-1-phosphotransferase.", "The Journal of biological chemistry", "2011 Feb 18", "Encarnacao M, Kollmann K, Trusch M, Braulke T, Pohl S", "protein_xref_pubmed", "21173149", "protein_xref_uniprotkb_gly", "Q6S5C2", "" ], [ "Q8BH35-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "Q8BH35", "" ], [ "P45700-1", "Structure of mouse Golgi alpha-mannosidase IA reveals the molecular basis for substrate specificity among class 1 (family 47 glycosylhydrolase) alpha1,2-mannosidases.", "The Journal of biological chemistry", "2004 Jul 9", "Tempel W, Karaveg K, Liu ZJ, Rose J, Wang BC, Moremen KW", "protein_xref_pubmed", "15102839", "protein_xref_uniprotkb_gly", "P45700", "" ], [ "O35114-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "O35114", "" ] ] }, "readme": "Name\n - Mouse Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2021-06-03T16:33:45.288361\n\nModified on\n - 2023-03-14T16:53:05.178Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_proteoform_glycosylation_sites_uniprotkb.csv\n Output Subdomain\n Name: mouse_proteoform_citations_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_proteoform_citations_glycosylation_sites_uniprotkb.csv\n Name: mouse_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"493\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"209\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"71\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"198\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"209\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"209\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"496\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/mouse_proteoform_citations_glycosylation_sites_uniprotkb.csv" }