{ "bcoid": "GLY_000560", "title": "Human Proteoform Glycosylation Citations (UniProtKB)", "description": "", "filename": "human_proteoform_citations_glycosylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Proteoform" ], "tag": [ "Protein Citations UniProtKB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P04921-1...", "N-terminal a..." ], [ "Q15910-1...", "O-GlcNAcylat..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "P04921-1", "N-terminal amino acid sequence of sialoglycoprotein D (glycophorin C) from human erythrocyte membranes.", "European journal of biochemistry", "1982 Jun 15", "Dahr W, Beyreuther K, Kordowicz M, Kruger J", "protein_xref_pubmed", "7106126", "protein_xref_uniprotkb_gly", "P04921", "" ], [ "Q15910-1", "O-GlcNAcylation regulates EZH2 protein stability and function.", "Proceedings of the National Academy of Sciences of the United States of America", "2014 Jan 28", "Chu CS, Lo PW, Yeh YH, Hsu PH, Peng SH, Teng YC, Kang ML, Wong CH, Juan LJ", "protein_xref_pubmed", "24474760", "protein_xref_uniprotkb_gly", "Q15910", "" ], [ "Q95460-1", "Biochemical features of the MHC-related protein 1 consistent with an immunological function.", "Journal of immunology (Baltimore, Md. : 1950)", "2003 Jun 15", "Miley MJ, Truscott SM, Yu YY, Gilfillan S, Fremont DH, Hansen TH, Lybarger L", "protein_xref_pubmed", "12794138", "protein_xref_uniprotkb_gly", "Q95460", "" ], [ "Q5T6X5-1", "N-glycosylation and disulfide bonding affects GPRC6A receptor expression, function, and dimerization.", "FEBS letters", "2015 Feb 27", "Norskov-Lauritsen L, Jorgensen S, Brauner-Osborne H", "protein_xref_pubmed", "25617829", "protein_xref_uniprotkb_gly", "Q5T6X5", "" ], [ "Q13740-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "Q13740", "" ], [ "Q13740-1", "Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry.", "Nature biotechnology", "2003 Jun", "Zhang H, Li XJ, Martin DB, Aebersold R", "protein_xref_pubmed", "12754519", "protein_xref_uniprotkb_gly", "Q13740", "" ], [ "Q86VB7-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "Q86VB7", "" ], [ "O00469-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "O00469", "" ], [ "Q92954-1", "The O-glycomap of lubricin, a novel mucin responsible for joint lubrication, identified by site-specific glycopeptide analysis.", "Molecular & cellular proteomics : MCP", "2014 Dec", "Ali L, Flowers SA, Jin C, Bennet EP, Ekwall AK, Karlsson NG", "protein_xref_pubmed", "25187573", "protein_xref_uniprotkb_gly", "Q92954", "" ], [ "P10253-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P10253", "" ], [ "P10253-1", "Human lysosomal alpha-glucosidase: functional characterization of the glycosylation sites.", "The Biochemical journal", "1993 Feb 1", "Hermans MM, Wisselaar HA, Kroos MA, Oostra BA, Reuser AJ", "protein_xref_pubmed", "8435067", "protein_xref_uniprotkb_gly", "P10253", "" ], [ "P10253-1", "Structure of human lysosomal acid alpha-glucosidase-a guide for the treatment of Pompe disease.", "Nature communications", "2017 Oct 24", "Roig-Zamboni V, Cobucci-Ponzano B, Iacono R, Ferrara MC, Germany S, Bourne Y, Parenti G, Moracci M, Sulzenbacher G", "protein_xref_pubmed", "29061980", "protein_xref_uniprotkb_gly", "P10253", "" ], [ "P06133-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P06133", "" ], [ "P02749-1", "Enrichment of glycopeptides for glycan structure and attachment site identification.", "Nature methods", "2009 Nov", "Nilsson J, Ruetschi U, Halim A, Hesse C, Carlsohn E, Brinkmalm G, Larson G", "protein_xref_pubmed", "19838169", "protein_xref_uniprotkb_gly", "P02749", "" ], [ "P02749-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P02749", "" ], [ "P02749-1", "Screening for N-glycosylated proteins by liquid chromatography mass spectrometry.", "Proteomics", "2004 Feb", "Bunkenborg J, Pilch BJ, Podtelejnikov AV, Wisniewski JR", "protein_xref_pubmed", "14760718", "protein_xref_uniprotkb_gly", "P02749", "" ], [ "P02749-1", "Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.", "Journal of proteome research", "2005 Nov-Dec", "Liu T, Qian WJ, Gritsenko MA, Camp DG 2nd, Monroe ME, Moore RJ, Smith RD", "protein_xref_pubmed", "16335952", "protein_xref_uniprotkb_gly", "P02749", "" ], [ "P02749-1", "Complete amino acid sequence of human plasma beta 2-glycoprotein I.", "Proceedings of the National Academy of Sciences of the United States of America", "1984 Jun", "Lozier J, Takahashi N, Putnam FW", "protein_xref_pubmed", "6587378", "protein_xref_uniprotkb_gly", "P02749", "" ], [ "P02749-1", "Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry.", "Journal of proteome research", "2006 Jun", "Ramachandran P, Boontheung P, Xie Y, Sondej M, Wong DT, Loo JA", "protein_xref_pubmed", "16740002", "protein_xref_uniprotkb_gly", "P02749", "" ], [ "P02749-1", "A strategy for precise and large scale identification of core fucosylated glycoproteins.", "Molecular & cellular proteomics : MCP", "2009 May", "Jia W, Lu Z, Fu Y, Wang HP, Wang LH, Chi H, Yuan ZF, Zheng ZB, Song LN, Han HH, Liang YM, Wang JL, Cai Y, Zhang YK, Deng YL, Ying WT, He SM, Qian XH", "protein_xref_pubmed", "19139490", "protein_xref_uniprotkb_gly", "P02749", "" ], [ "P02749-1", "A proteomic analysis of human bile.", "Molecular & cellular proteomics : MCP", "2004 Jul", "Kristiansen TZ, Bunkenborg J, Gronborg M, Molina H, Thuluvath PJ, Argani P, Goggins MG, Maitra A, Pandey A", "protein_xref_pubmed", "15084671", "protein_xref_uniprotkb_gly", "P02749", "" ], [ "Q96DR5-1", "Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry.", "Journal of proteome research", "2006 Jun", "Ramachandran P, Boontheung P, Xie Y, Sondej M, Wong DT, Loo JA", "protein_xref_pubmed", "16740002", "protein_xref_uniprotkb_gly", "Q96DR5", "" ], [ "Q02817-1", "Assembly Mechanism of Mucin and von Willebrand Factor Polymers.", "Cell", "2020-10-29", "Javitt Gabriel, Khmelnitsky Lev, Albert Lis, Bigman Lavi Shlomo, Elad Nadav, Morgenstern David, Ilani Tal, Levy Yaakov, Diskin Ron, Fass Deborah", "protein_xref_pubmed", "33031746", "protein_xref_uniprotkb_gly", "Q02817", "" ], [ "Q9UKX5-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "Q9UKX5", "" ], [ "Q15904-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", 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3", "Wei H, Wang D, Qian Y, Liu X, Fan S, Yin HS, Wang X", "protein_xref_pubmed", "25261253", "protein_xref_uniprotkb_gly", "Q13478", "" ], [ "P42785-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P42785", "" ], [ "P42785-1", "Structural definition and substrate specificity of the S28 protease family: the crystal structure of human prolylcarboxypeptidase.", "BMC structural biology", "2010 Jun 11", "Soisson SM, Patel SB, Abeywickrema PD, Byrne NJ, Diehl RE, Hall DL, Ford RE, Reid JC, Rickert KW, Shipman JM, Sharma S, Lumb KJ", "protein_xref_pubmed", "20540760", "protein_xref_uniprotkb_gly", "P42785", "" ], [ "O15118-1", "Structure of glycosylated NPC1 luminal domain C reveals insights into NPC2 and Ebola virus interactions.", "FEBS letters", "2016 Mar", "Zhao Y, Ren J, Harlos K, Stuart DI", "protein_xref_pubmed", "26846330", "protein_xref_uniprotkb_gly", "O15118", "" ], [ "O15118-1", "3.3 A structure of Niemann-Pick C1 protein reveals insights into the function of the C-terminal luminal domain in cholesterol transport.", "Proceedings of the National Academy of Sciences of the United States of America", "2017 Aug 22", "Li X, Lu F, Trinh MN, Schmiege P, Seemann J, Wang J, Blobel G", "protein_xref_pubmed", "28784760", "protein_xref_uniprotkb_gly", "O15118", "" ], [ "P41180-1", "Structural mechanism of ligand activation in human calcium-sensing receptor.", "eLife", "2016 Jul 19", "Geng Y, Mosyak L, Kurinov I, Zuo H, Sturchler E, Cheng TC, Subramanyam P, Brown AP, Brennan SC, Mun HC, Bush M, Chen Y, Nguyen TX, Cao B, Chang DD, Quick M, Conigrave AD, Colecraft HM, McDonald P, Fan QR", "protein_xref_pubmed", "27434672", "protein_xref_uniprotkb_gly", "P41180", "" ], [ "P40189-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P40189", "" ], [ "P40189-1", "Determination of the disulfide structure and N-glycosylation sites of the extracellular domain of the human signal transducer gp130.", "The Journal of biological chemistry", "2001 Mar 16", "Moritz RL, Hall NE, Connolly LM, Simpson RJ", "protein_xref_pubmed", "11098061", "protein_xref_uniprotkb_gly", "P40189", "" ], [ "P40189-1", "Crystal structure of the entire ectodomain of gp130: insights into the molecular assembly of the tall cytokine receptor complexes.", "The Journal of biological chemistry", "2010 Jul 9", "Xu Y, Kershaw NJ, Luo CS, Soo P, Pocock MJ, Czabotar PE, Hilton DJ, Nicola NA, Garrett TP, Zhang JG", "protein_xref_pubmed", "20489211", "protein_xref_uniprotkb_gly", "P40189", "" ], [ "P42658-1", "Structure of a human A-type potassium channel interacting protein DPPX, a member of the dipeptidyl aminopeptidase family.", "Journal of molecular biology", "2004 Oct 29", "Strop P, Bankovich AJ, Hansen KC, Garcia KC, Brunger AT", "protein_xref_pubmed", "15476821", "protein_xref_uniprotkb_gly", "P42658", "" ], [ "P27352-1", "Structural basis for receptor recognition of vitamin-B(12)-intrinsic factor complexes.", "Nature", "2010 Mar 18", "Andersen CB, Madsen M, Storm T, Moestrup SK, Andersen GR", "protein_xref_pubmed", "20237569", "protein_xref_uniprotkb_gly", "P27352", "" ], [ "P41222-1", "Enrichment of glycopeptides for glycan structure and attachment site identification.", "Nature methods", "2009 Nov", "Nilsson J, Ruetschi U, Halim A, Hesse C, Carlsohn E, Brinkmalm G, Larson G", "protein_xref_pubmed", "19838169", "protein_xref_uniprotkb_gly", "P41222", "" ], [ "P41222-1", "Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.", "Journal of proteome research", "2005 Nov-Dec", "Liu T, Qian WJ, Gritsenko MA, Camp DG 2nd, Monroe ME, Moore RJ, Smith RD", "protein_xref_pubmed", "16335952", "protein_xref_uniprotkb_gly", "P41222", "" ], [ "P41222-1", "A strategy for precise and large scale identification of core fucosylated glycoproteins.", "Molecular & cellular proteomics : MCP", "2009 May", "Jia W, Lu Z, Fu Y, Wang HP, Wang LH, Chi H, Yuan ZF, Zheng ZB, Song LN, Han HH, Liang YM, Wang JL, Cai Y, Zhang YK, Deng YL, Ying WT, He SM, Qian XH", "protein_xref_pubmed", "19139490", "protein_xref_uniprotkb_gly", "P41222", "" ], [ "P41222-1", "Purification and chemical characterization of beta-trace protein from human cerebrospinal fluid: its identification as prostaglandin D synthase.", "Journal of neurochemistry", "1993 Aug", "Hoffmann A, Conradt HS, Gross G, Nimtz M, Lottspeich F, Wurster U", "protein_xref_pubmed", "8336134", "protein_xref_uniprotkb_gly", "P41222", "" ], [ "P41222-1", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G", "protein_xref_pubmed", "22171320", "protein_xref_uniprotkb_gly", "P41222", "" ], [ "P54317-1", "Structure of human pancreatic lipase-related protein 2 with the lid in an open conformation.", "Biochemistry", "2008 Sep 9", "Eydoux C, Spinelli S, Davis TL, Walker JR, Seitova A, Dhe-Paganon S, De Caro A, Cambillau C, Carriere F", "protein_xref_pubmed", "18702514", "protein_xref_uniprotkb_gly", "P54317", "" ], [ "Q9GZV9-1", "Molecular basis for fibroblast growth factor 23 O-glycosylation by GalNAc-T3.", "Nature chemical biology", "2020 Mar", "de Las Rivas M, Paul Daniel EJ, Narimatsu Y, Companon I, Kato K, Hermosilla P, Thureau A, Ceballos-Laita L, Coelho H, Bernado P, Marcelo F, Hansen L, Maeda R, Lostao A, Corzana F, Clausen H, Gerken TA, Hurtado-Guerrero R", "protein_xref_pubmed", "31932717", 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complex with IgA1-Fc.", "Nature", "2003 Jun 5", "Herr AB, Ballister ER, Bjorkman PJ", "protein_xref_pubmed", "12768205", "protein_xref_uniprotkb_gly", "P24071", "" ], [ "P27701-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P27701", "" ], [ "P27701-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P27701", "" ], [ "P09603-1", "Structural analysis of proteoglycan macrophage colony-stimulating factor.", "The Journal of biological chemistry", "1994-08-05", "Kimura F, Suzu S, Nakamura Y, Wakimoto N, Kanatani Y, Yanai N, Nagata N, Motoyoshi K", "protein_xref_pubmed", "8051056", "protein_xref_uniprotkb_gly", "P09603", "" ], [ "Q9Y251-1", "Secretion of heparanase protein is regulated by glycosylation in human tumor cell lines.", "The Journal of biological chemistry", "2004 Jan 23", "Simizu S, Ishida K, Wierzba MK, Osada H", "protein_xref_pubmed", "14573609", "protein_xref_uniprotkb_gly", "Q9Y251", "" ], [ "Q02985-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "Q02985", "" ], [ "Q07075-1", "Structural insights into central hypertension regulation by human aminopeptidase A.", "The Journal of biological chemistry", "2013 Aug 30", "Yang Y, Liu C, Lin YL, Li F", "protein_xref_pubmed", "23888046", "protein_xref_uniprotkb_gly", 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[jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycosylation_sites_uniprotkb.csv\n Name: human_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1240\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"972\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"147\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"853\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"970\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"972\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1240\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycosylation_sites_uniprotkb.csv" }