{ "bcoid": "GLY_000518", "title": "Human O-GlcNAc Glycosylation Citations (MCW)", "description": "The Human O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present ...", "filename": "human_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Proteoform" ], "tag": [ "Protein Citations O-GlcNAc (MCW)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A075B759-1...", "O-GlcNAc-ind..." ], [ "A0A087WXM9-1...", "A triarylpho..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", 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"G49108TO" ], [ "A0A087X1C1-1", "Next-generation unnatural monosaccharides reveal that ESRRB O-GlcNAcylation regulates pluripotency of mouse embryonic stem cells.", "Nature communications", "2019 Sep 6", "Hao Y, Fan X, Shi Y, Zhang C, Sun DE, Qin K, Qin W, Zhou W, Chen X", "protein_xref_pubmed", "31492838", "protein_xref_oglcnac_db", "A0A087X1C1", "G49108TO" ], [ "A0A0B4J2D5-1", "Synthesis of a Highly Azide-Reactive and Thermosensitive Biofunctional Reagent for Efficient Enrichment and Large-Scale Identification of O-GlcNAc Proteins by Mass Spectrometry.", "Analytical chemistry", "2017 Jun 6", "Zhang W, Liu T, Dong H, Bai H, Tian F, Shi Z, Chen M, Wang J, Qin W, Qian X", "protein_xref_pubmed", "28510447", "protein_xref_oglcnac_db", "A0A0B4J2D5", "G49108TO" ], [ "A0A0J9YWL9-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang 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"A0AVK6-1", "Simultaneously Identifying and Distinguishing Glycoproteins with O-GlcNAc and O-GalNAc (the Tn Antigen) in Human Cancer Cells.", "Analytical chemistry", "2022 Feb 22", "Xu S, Zheng J, Xiao H, Wu R", "protein_xref_pubmed", "35132862", "protein_xref_oglcnac_db", "A0AVK6", "G49108TO" ], [ "A0AVK6-1", "An Optimized Isotopic Photocleavable Tagging Strategy for Site-Specific and Quantitative Profiling of Protein O-GlcNAcylation in Colorectal Cancer Metastasis.", "ACS chemical biology", "2022 Mar 18", "Liu J, Hao Y, Wang C, Jin Y, Yang Y, Gu J, Chen X", "protein_xref_pubmed", "35254053", "protein_xref_oglcnac_db", "A0AVK6", "G49108TO" ], [ "A0AVT1-1", "Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry.", "Journal of proteome research", "2013 Feb 1", "Hahne H, Sobotzki N, Nyberg T, Helm D, Borodkin VS, van Aalten DM, Agnew B, Kuster B", "protein_xref_pubmed", "23301498", "protein_xref_oglcnac_db", "A0AVT1", "G49108TO" ], [ "A0AVT1-1", "Truncation of the TPR domain of OGT alters substrate and glycosite selection.", "Analytical and bioanalytical chemistry", "2021 Dec", "Ramirez DH, Yang B, D'Souza AK, Shen D, Woo CM", "protein_xref_pubmed", "34725712", "protein_xref_oglcnac_db", "A0AVT1", "G49108TO" ], [ "A0AVT1-1", "Synthesis of a Highly Azide-Reactive and Thermosensitive Biofunctional Reagent for Efficient Enrichment and Large-Scale Identification of O-GlcNAc Proteins by Mass Spectrometry.", "Analytical chemistry", "2017 Jun 6", "Zhang W, Liu T, Dong H, Bai H, Tian F, Shi Z, Chen M, Wang J, Qin W, Qian X", "protein_xref_pubmed", "28510447", "protein_xref_oglcnac_db", "A0AVT1", "G49108TO" ], [ "A0AVT1-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A0AVT1", "G49108TO" ], [ "A0FGR8-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang W, Shi Z, Tian F, Deng Y, Sun C, Wang G, Qin W, Qian X", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A0FGR8", "G49108TO" ], [ "A0FGR8-1", "Synthesis of a Highly Azide-Reactive and Thermosensitive Biofunctional Reagent for Efficient Enrichment and Large-Scale Identification of O-GlcNAc Proteins by Mass Spectrometry.", "Analytical chemistry", "2017 Jun 6", "Zhang W, Liu T, Dong H, Bai H, Tian F, Shi Z, Chen M, Wang J, Qin W, Qian X", "protein_xref_pubmed", "28510447", "protein_xref_oglcnac_db", "A0FGR8", "G49108TO" ], [ "A0FGR8-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A0FGR8", "G49108TO" ], [ "A0JLT2-1", "O-GlcNAc modification regulates MTA1 transcriptional activity during breast cancer cell genotoxic adaptation.", "Biochimica et biophysica acta. General subjects", "2021 Aug", "Xie X, Wu Q, Zhang K, Liu Y, Zhang N, Chen Q, Wang L, Li W, Zhang J, Liu Y", "protein_xref_pubmed", "34019948", "protein_xref_oglcnac_db", "A0JLT2", "G49108TO" ], [ "A0JNW5-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A0JNW5", "G49108TO" ], [ "A0MZ66-1", "Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry.", "Journal of proteome research", "2013 Feb 1", "Hahne H, Sobotzki N, Nyberg T, Helm D, Borodkin VS, van Aalten DM, Agnew B, Kuster B", "protein_xref_pubmed", "23301498", "protein_xref_oglcnac_db", "A0MZ66", "G49108TO" ], [ "A0MZ66-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A0MZ66", "G49108TO" ], [ "A0MZ66-1", "Synthesis of a Highly Azide-Reactive and Thermosensitive Biofunctional Reagent for Efficient Enrichment and Large-Scale Identification of O-GlcNAc Proteins by Mass Spectrometry.", "Analytical chemistry", "2017 Jun 6", "Zhang W, Liu T, Dong H, Bai H, Tian F, Shi Z, Chen M, Wang J, Qin W, Qian X", "protein_xref_pubmed", "28510447", "protein_xref_oglcnac_db", "A0MZ66", "G49108TO" ], [ "A0MZ66-1", "Aspartate Residues Far from the Active Site Drive O-GlcNAc Transferase Substrate Selection.", "Journal of the American Chemical Society", "2019 Aug 21", "Joiner CM, Levine ZG, Aonbangkhen C, Woo CM, Walker S", "protein_xref_pubmed", "31373491", "protein_xref_oglcnac_db", "A0MZ66", "G49108TO" ], [ "A0MZ66-1", "Comparative O-GlcNAc Proteomic Analysis Reveals a Role of O-GlcNAcylated SAM68 in Lung Cancer Aggressiveness.", "Cancers", "2022 Jan 4", "Lin CH, Liao CC, Wang SY, Peng CY, Yeh YC, Chen MY, Chou TY", "protein_xref_pubmed", "35008409", "protein_xref_oglcnac_db", "A0MZ66", "G49108TO" ], [ "A1A5D9-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang W, Shi Z, Tian F, Deng Y, Sun C, Wang G, Qin W, Qian X", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A1A5D9", "G49108TO" ], [ "A1E959-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang W, Shi Z, Tian F, Deng Y, Sun C, Wang G, Qin W, Qian X", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A1E959", "G49108TO" ], [ "A1L020-1", "Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry.", "Journal of proteome research", "2013 Feb 1", "Hahne H, Sobotzki N, Nyberg T, Helm D, Borodkin VS, van Aalten DM, Agnew B, Kuster B", "protein_xref_pubmed", "23301498", "protein_xref_oglcnac_db", "A1L020", "G49108TO" ], [ "A1L0T0-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A1L0T0", "G49108TO" ], [ "A1L188-1", "Synthesis of a Highly Azide-Reactive and Thermosensitive Biofunctional Reagent for Efficient Enrichment and Large-Scale Identification of O-GlcNAc Proteins by Mass Spectrometry.", "Analytical chemistry", "2017 Jun 6", "Zhang W, Liu T, Dong H, Bai H, Tian F, Shi Z, Chen M, Wang J, Qin W, Qian X", "protein_xref_pubmed", "28510447", "protein_xref_oglcnac_db", "A1L188", "G49108TO" ], [ "A1L4H1-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang W, Shi Z, Tian F, Deng Y, Sun C, Wang G, Qin W, Qian X", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A1L4H1", "G49108TO" ], [ "A1L4H1-1", "Next-generation unnatural monosaccharides reveal that ESRRB O-GlcNAcylation regulates pluripotency of mouse embryonic stem cells.", "Nature communications", "2019 Sep 6", "Hao Y, Fan X, Shi Y, Zhang C, Sun DE, Qin K, Qin W, Zhou W, Chen X", "protein_xref_pubmed", "31492838", "protein_xref_oglcnac_db", "A1L4H1", "G49108TO" ], [ "A2A3L6-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A2A3L6", "G49108TO" ], [ "A2A3N6-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A2A3N6", "G49108TO" ], [ "A2A3N6-1", "Glycopeptide-specific monoclonal antibodies suggest new roles for O-GlcNAc.", "Nature chemical biology", "2010 May", "Teo CF, Ingale S, Wolfert MA, Elsayed GA, Not LG, Chatham JC, Wells L, Boons GJ", "protein_xref_pubmed", "20305658", "protein_xref_oglcnac_db", "A2A3N6", "G49108TO" ], [ "A2PYH4-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A2PYH4", "G49108TO" ], [ "A2RRD8-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A2RRD8", "G49108TO" ], [ "A2RRH5-1", "An Optimized Isotopic Photocleavable Tagging Strategy for Site-Specific and Quantitative Profiling of Protein O-GlcNAcylation in Colorectal Cancer Metastasis.", "ACS chemical biology", "2022 Mar 18", "Liu J, Hao Y, Wang C, Jin Y, Yang Y, Gu J, Chen X", "protein_xref_pubmed", "35254053", "protein_xref_oglcnac_db", "A2RRH5", "G49108TO" ], [ "A2RRP1-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A2RRP1", "G49108TO" ], [ "A2RTX5-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang W, Shi Z, Tian F, Deng Y, Sun C, Wang G, Qin W, Qian X", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A2RTX5", "G49108TO" ], [ "A2RTY3-1", "Endo-M Mediated Chemoenzymatic Approach Enables Reversible Glycopeptide Labeling for O-GlcNAcylation Analysis.", "Angewandte Chemie (International ed. in English)", "2022 Jun 7", "Chen Y, Tang F, Qin H, Yue X, Nie Y, Huang W, Ye M", "protein_xref_pubmed", "35289036", "protein_xref_oglcnac_db", "A2RTY3", "G49108TO" ], [ "A2RUQ5-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A2RUQ5", "G49108TO" ], [ "A2RUS2-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A2RUS2", "G49108TO" ], [ "A3KMH1-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A3KMH1", "G49108TO" ], [ "A3KMH1-1", "Synthesis of a Highly Azide-Reactive and Thermosensitive Biofunctional Reagent for Efficient Enrichment and Large-Scale Identification of O-GlcNAc Proteins by Mass Spectrometry.", "Analytical chemistry", "2017 Jun 6", "Zhang W, Liu T, Dong H, Bai H, Tian F, Shi Z, Chen M, Wang J, Qin W, Qian X", "protein_xref_pubmed", "28510447", "protein_xref_oglcnac_db", "A3KMH1", "G49108TO" ], [ "A3KN83-1", "Global Analysis of O-GlcNAc Glycoproteins in Activated Human T Cells.", "Journal of immunology (Baltimore, Md. : 1950)", "2016 Oct 15", "Lund PJ, Elias JE, Davis MM", "protein_xref_pubmed", "27655845", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Proteomic profiling and genome-wide mapping of O-GlcNAc chromatin-associated proteins reveal an O-GlcNAc-regulated genotoxic stress response.", "Nature communications", "2020 Nov 19", "Liu Y, Chen Q, Zhang N, Zhang K, Dou T, Cao Y, Liu Y, Li K, Hao X, Xie X, Li W, Ren Y, Zhang J", "protein_xref_pubmed", "33214551", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Simultaneously Identifying and Distinguishing Glycoproteins with O-GlcNAc and O-GalNAc (the Tn Antigen) in Human Cancer Cells.", "Analytical chemistry", "2022 Feb 22", "Xu S, Zheng J, Xiao H, Wu R", "protein_xref_pubmed", "35132862", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "O-GlcNAc modification regulates MTA1 transcriptional activity during breast cancer cell genotoxic adaptation.", "Biochimica et biophysica acta. General subjects", "2021 Aug", "Xie X, Wu Q, Zhang K, Liu Y, Zhang N, Chen Q, Wang L, Li W, Zhang J, Liu Y", "protein_xref_pubmed", "34019948", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "A Chemoenzymatic Method Based on Easily Accessible Enzymes for Profiling Protein O-GlcNAcylation.", "Analytical chemistry", "2020 Jul 21", "Xu S, Sun F, Wu R", "protein_xref_pubmed", "32574038", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Truncation of the TPR domain of OGT alters substrate and glycosite selection.", "Analytical and bioanalytical chemistry", "2021 Dec", "Ramirez DH, Yang B, D'Souza AK, Shen D, Woo CM", "protein_xref_pubmed", "34725712", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Quantitative Profiling of Protein O-GlcNAcylation Sites by an Isotope-Tagged Cleavable Linker.", "ACS chemical biology", "2018 Aug 17", "Qin K, Zhu Y, Qin W, Gao J, Shao X, Wang YL, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "30059200", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "An Optimized Isotopic Photocleavable Tagging Strategy for Site-Specific and Quantitative Profiling of Protein O-GlcNAcylation in Colorectal Cancer Metastasis.", "ACS chemical biology", "2022 Mar 18", "Liu J, Hao Y, Wang C, Jin Y, Yang Y, Gu J, Chen X", "protein_xref_pubmed", "35254053", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Next-generation unnatural monosaccharides reveal that ESRRB O-GlcNAcylation regulates pluripotency of mouse embryonic stem cells.", "Nature communications", "2019 Sep 6", "Hao Y, Fan X, Shi Y, Zhang C, Sun DE, Qin K, Qin W, Zhou W, Chen X", "protein_xref_pubmed", "31492838", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Spatiotemporal Activation of Protein O-GlcNAcylation in Living Cells.", "Journal of the American Chemical Society", "2022 Mar 16", "He J, Fan Z, Tian Y, Yang W, Zhou Y, Zhu Q, Zhang W, Qin W, Yi W", "protein_xref_pubmed", "35138101", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Engineering a Proximity-Directed O-GlcNAc Transferase for Selective Protein O-GlcNAcylation in Cells.", "ACS chemical biology", "2020 Apr 17", "Ramirez DH, Aonbangkhen C, Wu HY, Naftaly JA, Tang S, O'Meara TR, Woo CM", "protein_xref_pubmed", "32119511", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Endo-M Mediated Chemoenzymatic Approach Enables Reversible Glycopeptide Labeling for O-GlcNAcylation Analysis.", "Angewandte Chemie (International ed. in English)", "2022 Jun 7", "Chen Y, Tang F, Qin H, Yue X, Nie Y, Huang W, Ye M", "protein_xref_pubmed", "35289036", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.", "The Journal of pathology", "2017 Sep", "Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T", "protein_xref_pubmed", "28657654", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Artificial Cysteine S-Glycosylation Induced by Per-O-Acetylated Unnatural Monosaccharides during Metabolic Glycan Labeling.", "Angewandte Chemie (International ed. in English)", "2018 Feb 12", "Qin W, Qin K, Fan X, Peng L, Hong W, Zhu Y, Lv P, Du Y, Huang R, Han M, Cheng B, Liu Y, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "29237092", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "Extensive crosstalk between O-GlcNAcylation and phosphorylation regulates cytokinesis.", "Science signaling", "2010 Jan 12", "Wang Z, Udeshi ND, Slawson C, Compton PD, Sakabe K, Cheung WD, Shabanowitz J, Hunt DF, Hart GW", "protein_xref_pubmed", "20068230", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A4D161-1", "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.", "The Journal of pathology", "2017 Sep", "Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T", "protein_xref_pubmed", "28657654", "protein_xref_oglcnac_db", "A4D161", "G49108TO" ], [ "A4D1E1-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A4D1E1", "G49108TO" ], [ "A4D1E1-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang W, Shi Z, Tian F, Deng Y, Sun C, Wang G, Qin W, Qian X", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A4D1E1", "G49108TO" ], [ "A4D1E9-1", "Synthesis of a Highly Azide-Reactive and Thermosensitive Biofunctional Reagent for Efficient Enrichment and Large-Scale Identification of O-GlcNAc Proteins by Mass Spectrometry.", "Analytical chemistry", "2017 Jun 6", "Zhang W, Liu T, Dong H, Bai H, Tian F, Shi Z, Chen M, Wang J, Qin W, Qian X", "protein_xref_pubmed", "28510447", "protein_xref_oglcnac_db", "A4D1E9", "G49108TO" ], [ "A4D256-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A4D256", "G49108TO" ], [ "A4D2G3-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang W, Shi Z, Tian F, Deng Y, Sun C, Wang G, Qin W, Qian X", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A4D2G3", "G49108TO" ], [ "A4FU49-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A4FU49", "G49108TO" ], [ "A4FU69-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A4FU69", "G49108TO" ], [ "A4UGR9-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A4UGR9", "G49108TO" ], [ "A4UGR9-1", "A novel strategy for global mapping of O-GlcNAc proteins and peptides using selective enzymatic deglycosylation, HILIC enrichment and mass spectrometry identification.", "Talanta", "2017 Jul 1", "Shen B, Zhang W, Shi Z, Tian F, Deng Y, Sun C, Wang G, Qin W, Qian X", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A4UGR9", "G49108TO" ], [ "A4UGR9-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A4UGR9", "G49108TO" ], [ "A5A3E0-1", "Combinatorial regulation of hepatic cytoplasmic signaling and nuclear transcriptional events by the OGT/REV-ERBalpha complex.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 Nov 20", "Berthier A, Vinod M, Porez G, Steenackers A, Alexandre J, Yamakawa N, Gheeraert C, Ploton M, Marechal X, Dubois-Chevalier J, Hovasse A, Schaeffer-Reiss C, Cianferani S, Rolando C, Bray F, Duez H, Eeckhoute J, Lefebvre T, Staels B, Lefebvre P", "protein_xref_pubmed", "30397120", "protein_xref_oglcnac_db", "A5A3E0", "G49108TO" ], [ "A5D8V7-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A5D8V7", "G49108TO" ], [ "A5PLN9-1", "Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry.", "Journal of proteome research", "2013 Feb 1", "Hahne H, Sobotzki N, Nyberg T, Helm D, Borodkin VS, van Aalten DM, Agnew B, Kuster B", "protein_xref_pubmed", "23301498", "protein_xref_oglcnac_db", "A5PLN9", "G49108TO" ], [ "A5YKK6-1", "Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry.", "Journal of proteome research", "2013 Feb 1", "Hahne H, Sobotzki N, Nyberg T, Helm D, Borodkin VS, van Aalten DM, Agnew B, Kuster B", "protein_xref_pubmed", "23301498", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A5YKK6-1", "Global Analysis of O-GlcNAc Glycoproteins in Activated Human T Cells.", "Journal of immunology (Baltimore, Md. : 1950)", "2016 Oct 15", "Lund PJ, Elias JE, Davis MM", "protein_xref_pubmed", "27655845", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A5YKK6-1", "Proteomic profiling and genome-wide mapping of O-GlcNAc chromatin-associated proteins reveal an O-GlcNAc-regulated genotoxic stress response.", "Nature communications", "2020 Nov 19", "Liu Y, Chen Q, Zhang N, Zhang K, Dou T, Cao Y, Liu Y, Li K, Hao X, Xie X, Li W, Ren Y, Zhang J", "protein_xref_pubmed", "33214551", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ] ] }, "readme": "Name\n - Human O-GlcNAc Glycosylation Citations (MCW)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2020-07-15T16:28:21.779974\n\nModified on\n - 2023-03-14T16:48:38.233Z\n\nCreated by\n - [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu], Rex R. Berendt [rberendt@mcw.edu], Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n - \n\nUsability Domain\n - The Human O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in the dataset Human O-GlcNAc Glycosylation Sites (MCW) https://data.glygen.org/GLY_000517, contributed by Stephanie Olivier's group.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n Name: human_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"7707\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"528\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"181\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"439\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"525\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"528\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"7707\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv" }