{ "bcoid": "GLY_000477", "title": "Glycan Images Details", "description": "The dataset provides details (such as image size, image notation, image style, image format)for the glycan ...", "filename": "glycan_image_details.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "images" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Sus scrofa", "Rattus", "Homo sapiens", "Mus musculus", "Saccharomyces cerevisiae", "Drosophila melanogaster", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Sus scrofa domesticus", "Dictyostelium discoideum", "Hepatitis C virus (isolate H)", "Severe acute respiratory syndrome-related coronavirus", "Hepacivirus C" ] }, "minitable": { "content": [ [ "G00002CF...", "1590..." ], [ "G00002CF...", "7633..." ] ], "headers": [ "glytoucan_ac...", "image_size..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "image_size" }, { "type": "string", "label": "image_notation" }, { "type": "string", "label": "image_style" }, { "type": "string", "label": "image_format" } ], [ "G00002CF", "1590", "snfg", "extended", "png" ], [ "G00002CF", "7633", "snfg", "extended", "svg" ], [ "G00009BX", "1819", "snfg", "extended", "png" ], [ "G00009BX", "9222", "snfg", "extended", "svg" ], [ "G00012MO", "1614", "snfg", "extended", "png" ], [ "G00012MO", "7650", "snfg", "extended", "svg" ], [ "G00012RZ", "6266", "snfg", "extended", "png" ], [ "G00012RZ", "26256", "snfg", "extended", "svg" ], [ "G00013MO", "1475", "snfg", "extended", "png" ], [ "G00013MO", "7715", "snfg", "extended", "svg" ], [ "G00014MO", "1651", "snfg", "extended", "png" ], [ "G00014MO", "7590", "snfg", "extended", "svg" ], [ "G00015MO", "1629", "snfg", "extended", "png" ], [ "G00015MO", "7647", "snfg", "extended", "svg" ], [ "G00016MO", "1107", "snfg", "extended", "png" ], [ "G00016MO", "4305", "snfg", "extended", "svg" ], [ "G00017IP", "2624", "snfg", "extended", "png" ], [ "G00017IP", "13007", "snfg", "extended", "svg" ], [ "G00017MO", "1200", "snfg", "extended", "png" ], [ "G00017MO", "7507", "snfg", "extended", "svg" ], [ "G00018MO", "1385", "snfg", "extended", "png" ], [ "G00018MO", "8358", "snfg", "extended", "svg" ], [ "G00019MO", "1360", "snfg", "extended", "png" ], [ "G00019MO", "8715", "snfg", "extended", "svg" ], [ "G00020MO", "1512", "snfg", "extended", "png" ], [ "G00020MO", "8442", "snfg", "extended", "svg" ], [ "G00021MO", "1628", "snfg", "extended", "png" ], [ "G00021MO", "9986", "snfg", "extended", "svg" ], [ "G00022MO", "1698", "snfg", "extended", "png" ], [ "G00022MO", "7798", "snfg", "extended", "svg" ], [ "G00023MO", "1546", "snfg", "extended", "png" ], [ "G00023MO", "8340", "snfg", "extended", "svg" ], [ "G00024MO", "1113", "snfg", "extended", "png" ], [ "G00024MO", "6013", "snfg", "extended", "svg" ], [ "G00025AJ", "1588", "snfg", "extended", "png" ], [ "G00025AJ", "5581", "snfg", "extended", "svg" ], [ "G00025HU", "4059", "snfg", "extended", "png" ], [ "G00025HU", "19370", "snfg", "extended", "svg" ], [ "G00025MO", "1242", "snfg", "extended", "png" ], [ "G00025MO", "7715", "snfg", "extended", "svg" ], [ "G00025YC", "4594", "snfg", "extended", "png" ], [ "G00025YC", "19533", "snfg", "extended", "svg" ], [ "G00026MO", "2044", "snfg", "extended", "png" ], [ "G00026MO", "9265", "snfg", "extended", "svg" ], [ "G00027JG", "2807", "snfg", "extended", "png" ], [ "G00027JG", "10857", "snfg", "extended", "svg" ], [ "G00027MO", "1866", "snfg", "extended", "png" ], [ "G00027MO", "7631", "snfg", "extended", "svg" ], [ "G00028MO", "2573", "snfg", "extended", "png" ], [ "G00028MO", "12700", "snfg", "extended", "svg" ], [ "G00029MO", "2473", "snfg", "extended", "png" ], [ "G00029MO", "12624", "snfg", "extended", "svg" ], [ "G00030HB", "5347", "snfg", "extended", "png" ], [ "G00030HB", "26196", "snfg", "extended", "svg" ], [ "G00030MO", "2473", "snfg", "extended", "png" ], [ "G00030MO", "12561", "snfg", "extended", "svg" ], [ "G00030SF", "1250", "snfg", "extended", "png" ], [ "G00030SF", "6363", "snfg", "extended", "svg" ], [ "G00031MO", "1103", "snfg", "extended", "png" ], [ "G00031MO", "4248", "snfg", "extended", "svg" ], [ "G00032MO", "1102", "snfg", "extended", "png" ], [ "G00032MO", "4248", "snfg", "extended", "svg" ], [ "G00033MO", "1571", "snfg", "extended", "png" ], [ "G00033MO", "5872", "snfg", "extended", "svg" ], [ "G00034MO", "1576", "snfg", "extended", "png" ], [ "G00034MO", "5872", "snfg", "extended", "svg" ], [ "G00034WH", "1385", "snfg", "extended", "png" ], [ "G00034WH", "11116", "snfg", "extended", "svg" ], [ "G00034WX", "2364", "snfg", "extended", "png" ], [ "G00034WX", "7460", "snfg", "extended", "svg" ], [ "G00035MO", "828", "snfg", "extended", "png" ], [ "G00035MO", "4183", "snfg", "extended", "svg" ], [ "G00036MO", "817", "snfg", "extended", "png" ], [ "G00036MO", "4183", "snfg", "extended", "svg" ], [ "G00037MO", "1236", "snfg", "extended", "png" ], [ "G00037MO", "5810", "snfg", "extended", "svg" ], [ "G00038JC", "1989", "snfg", "extended", "png" ], [ "G00038JC", "7572", "snfg", "extended", "svg" ], [ "G00038MO", "1239", "snfg", "extended", "png" ], [ "G00038MO", "5810", "snfg", "extended", "svg" ], [ "G00039MO", "781", "snfg", "extended", "png" ], [ "G00039MO", "4182", "snfg", "extended", "svg" ], [ "G00040MO", "813", "snfg", "extended", "png" ], [ "G00040MO", "4182", "snfg", "extended", "svg" ] ] }, "readme": "Name\n - Glycan Images Details\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2020-04-20T14:45:11.902693\n\nModified on\n - 2022-09-26T09:05:56.531976\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides details (such as image size, image notation, image style, image format)for the glycan (identified by GlyTouCan accession) images used in GlyGen. The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281)\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - images\n - ID/Accession Mapping\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the provider and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_masterlist.csv\n Name: images.tsv\n URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_08_17_2023/export/images.tsv\n Output Subdomain\n Name: glycan_image_details.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_image_details.csv\n Name: glycan_image_details.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_image_details.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"48869\"\n Name: \"image_size\"\n Description: \"Size of the image\"\n Unique Values: \"15685\"\n Name: \"image_notation\"\n Description: \"Format of the image (cfg/snfg)\"\n Unique Values: \"1\"\n Name: \"image_style\"\n Description: \"Style of the glycan image\"\n Unique Values: \"1\"\n Name: \"image_format\"\n Description: \"Format of the image (cfg/snfg)\"\n Unique Values: \"2\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/glycan_image_details.csv" }