{ "bcoid": "GLY_000470", "title": "SARS-CoV2 Protein Citations (UniProtKB)", "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Protein Citations dataset contains publication information ...", "filename": "sarscov2_protein_citations_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Severe acute respiratory syndrome coronavirus 2" ], "molecule": [ "Protein" ], "tag": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P0DTC7-1...", "A new corona..." ], [ "P0DTC7-1...", "Ubiquitinati..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P0DTC7-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Chen Y.-M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC7" ], [ "P0DTC7-1", "Ubiquitination of SARS-CoV-2 ORF7a promotes antagonism of interferon response.", "Cell. Mol. Immunol.", "2021", "Cao Z, Xia H, Rajsbaum R, Xia X, Wang H, Shi PY", "protein_xref_pubmed", "33473190", "protein_xref_uniprotkb", "P0DTC7" ], [ "P0DTC7-1", "SARS-CoV-2 accessory proteins ORF7a and ORF3a use distinct mechanisms to down-regulate MHC-I surface expression.", "Proc. Natl. Acad. Sci. U.S.A.", "2023", "Arshad Najla, Laurent-Rolle Maudry, Ahmed Wesam S, Hsu Jack Chun-Chieh, Mitchell Susan M, Pawlak Joanna, Sengupta Debrup, Biswas Kabir H, Cresswell Peter", "protein_xref_pubmed", "36574644", "protein_xref_uniprotkb", "P0DTC7" ], [ "P0DTC7-1", "Structural insight reveals SARS-CoV-2 ORF7a as an immunomodulating factor for human CD14+ monocytes.", "IScience", "2021", "Chen J., Chen S., Chen X., Huang C., Chen Q., Zhou Z., Su L., He S., Kang S., Xiao F., Huang Z., Rong X., Zhou Z.'", "protein_xref_pubmed", "33615195", "protein_xref_uniprotkb", "P0DTC7" ], [ "P0DTC7-1", "Functional landscape of SARS-CoV-2 cellular restriction.", "Mol. Cell", "2021", "Martin-Sancho L, Lewinski MK, Pache L, Stoneham CA, Yin X, Becker ME, Pratt D, Churas C, Rosenthal SB, Liu S, Weston S, De Jesus PD, O'Neill AM, Gounder AP, Nguyen C, Pu Y, Curry HM, Oom AL, Miorin L, Rodriguez-Frandsen A, Zheng F, Wu C, Xiong Y, Urbanowski M, Shaw ML, Chang MW, Benner C, Hope TJ, Frieman MB, Garcia-Sastre A, Ideker T, Hultquist JF, Guatelli J, Chanda SK", "protein_xref_pubmed", "33930332", "protein_xref_uniprotkb", "P0DTC7" ], [ "P0DTC7-1", "SARS-CoV-2 variants preferentially emerge at intrinsically disordered protein sites helping immune evasion.", "FEBS J.", "2022", "Minervini G., Carraro M., Le Mercier P., Quaglia F., Salladini E., Tosatto S.C.E.", "protein_xref_pubmed", "35108439", "protein_xref_uniprotkb", "P0DTC7" ], [ "P0DTD1-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Chen Y.-M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved alpha-ketoamide inhibitors.", "Science", "2020", "Zhang L, Lin D, Sun X, Curth U, Drosten C, Sauerhering L, Becker S, Rox K, Hilgenfeld R", "protein_xref_pubmed", "32198291", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "The role of NSP6 in the biogenesis of the SARS-CoV-2 replication organelle.", "Nature", "2022", "Ricciardi Simona, Guarino Andrea Maria, Giaquinto Laura, Polishchuk Elena V, Santoro Michele, Di Tullio Giuseppe, Wilson Cathal, Panariello Francesco, Soares Vinicius C, Dias Suelen S G, Santos Julia C, Souza Thiago M L, Fusco Giovanna, Viscardi Maurizio, Brandi Sergio, Bozza Patr\u00edcia T, Polishchuk Roman S, Venditti Rossella, De Matteis Maria Antonietta", "protein_xref_pubmed", "35551511", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Structure of Mpro from COVID-19 virus and discovery of its inhibitors.", "Nature", "2020", "Jiang H., Jin Z., Li X., Liu H., Liu M., Liu X., Wang L., Xu W., Yang H., Yang X., Yu J., Zhang L., Zhao Y., Bai F., Xu Y., Peng C., Yang K., Zhang B., Deng Y., Guddat L.W., Liu F., Rao Z., Jiang R., Xiao G., Liu X.', Duan Y., Shi Z., Du X., Qin C., Yang X.', You T.", "protein_xref_pubmed", "32272481", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Structure of replicating SARS-CoV-2 polymerase.", "Nature", "2020", "Cramer P., Farnung L., Hillen H.S., Dienemann C., Kokic G., Tegunov D.", "protein_xref_pubmed", "32438371", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Structural Basis for RNA Replication by the SARS-CoV-2 Polymerase.", "Cell", "2020", "Wang Q, Wu J, Wang H, Gao Y, Liu Q, Mu A, Ji W, Yan L, Zhu Y, Zhu C, Fang X, Yang X, Huang Y, Gao H, Liu F, Ge J, Sun Q, Yang X, Xu W, Liu Z, Yang H, Lou Z, Jiang B, Guddat LW, Gong P, Rao Z", "protein_xref_pubmed", "32526208", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.", "Science", "2020", "Thoms M, Buschauer R, Ameismeier M, Koepke L, Denk T, Hirschenberger M, Kratzat H, Hayn M, Mackens-Kiani T, Cheng J, Straub JH, Sturzel CM, Frohlich T, Berninghausen O, Becker T, Kirchhoff F, Sparrer KMJ, Beckmann R", "protein_xref_pubmed", "32680882", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Activation and evasion of type I interferon responses by SARS-CoV-2.", "Nat. Commun.", "2020", "Li L., Wang C., Wang J., Wang W., Wang Y., Zhao Z., Xiao X., Zhou Z., Guo F., Lei X., Dong X., Tian Z., Ren L., Ma R., Xiang Z.", "protein_xref_pubmed", "32733001", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation.", "Nat. Struct. Mol. Biol.", "2020", "Schubert K, Karousis ED, Jomaa A, Scaiola A, Echeverria B, Gurzeler LA, Leibundgut M, Thiel V, Muhlemann O, Ban N", "protein_xref_pubmed", "32908316", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Evasion of Type I Interferon by SARS-CoV-2.", "Cell Rep.", "2020", "Xia H, Cao Z, Xie X, Zhang X, Chen JY, Wang H, Menachery VD, Rajsbaum R, Shi PY", "protein_xref_pubmed", "32979938", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Structure of the RNA-dependent RNA polymerase from COVID-19 virus.", "Science", "2020", "Gao Y., Li J., Wang H., Wang Q., Xu W., Yang H., Yang X., Zhang L., Zhang Y., Zhao Y., Zheng L., Zhu Y., Cao L., Ge J., Huang Y., Liu Z., Yan L., Zhang B., Guddat L.W., Wang T., Liu F., Rao Z., Zhu C., Sun Q., Hu T., Lou Z., Hua T., Ming Z.", "protein_xref_pubmed", "32277040", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Structure-based design of antiviral drug candidates targeting the SARS-CoV-2 main protease.", "Science", "2020", "Hu S., Jiang H., Jin Z., Li C., Li J., Li Y., Liu H., Liu X., Wang H., Wang J., Yang H., Yang X., Zhao Y., Bai F., Xu Y., Zhang B., Cheng X., Dai W., Liu F., Rao Z., Xie X., Xiao G., Su H., Cen X., Zhang L.K.", "protein_xref_pubmed", "32321856", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Structural basis for inhibition of the RNA-dependent RNA polymerase from SARS-CoV-2 by remdesivir.", "Science", "2020", "Yin W, Mao C, Luan X, Shen DD, Shen Q, Su H, Wang X, Zhou F, Zhao W, Gao M, Chang S, Xie YC, Tian G, Jiang HW, Tao SC, Shen J, Jiang Y, Jiang H, Xu Y, Zhang S, Zhang Y, Xu HE", "protein_xref_pubmed", "32358203", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity.", "Nature", "2020", "Shin D, Mukherjee R, Grewe D, Bojkova D, Baek K, Bhattacharya A, Schulz L, Widera M, Mehdipour AR, Tascher G, Geurink PP, Wilhelm A, van der Heden van Noort GJ, Ovaa H, Muller S, Knobeloch KP, Rajalingam K, Schulman BA, Cinatl J, Hummer G, Ciesek S, Dikic I", "protein_xref_pubmed", "32726803", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Molecular Basis for ADP-ribose Binding to the Mac1 Domain of SARS-CoV-2 Nsp3.", "Biochemistry", "2020", "Frick D.N., Silvaggi N.R., Dahal N., Virdi R.S., Vuksanovic N.", "protein_xref_pubmed", "32578982", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses.", "Cell", "2020", "Banerjee AK, Blanco MR, Bruce EA, Honson DD, Chen LM, Chow A, Bhat P, Ollikainen N, Quinodoz SA, Loney C, Thai J, Miller ZD, Lin AE, Schmidt MM, Stewart DG, Goldfarb D, De Lorenzo G, Rihn SJ, Voorhees RM, Botten JW, Majumdar D, Guttman M", "protein_xref_pubmed", "33080218", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "ISG15-dependent activation of the sensor MDA5 is antagonized by the SARS-CoV-2 papain-like protease to evade host innate immunity.", "Nat. Microbiol.", "2021", "Liu G, Lee JH, Parker ZM, Acharya D, Chiang JJ, van Gent M, Riedl W, Davis-Gardner ME, Wies E, Chiang C, Gack MU", "protein_xref_pubmed", "33727702", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Cryo-EM structures of the SARS-CoV-2 endoribonuclease Nsp15 reveal insight into nuclease specificity and dynamics.", "Nat. Commun.", "2021", "Pillon MC, Frazier MN, Dillard LB, Williams JG, Kocaman S, Krahn JM, Perera L, Hayne CK, Gordon J, Stewart ZD, Sobhany M, Deterding LJ, Hsu AL, Dandey VP, Borgnia MJ, Stanley RE", "protein_xref_pubmed", "33504779", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2.", "Commun. Biol.", "2021", "Kim Y, Wower J, Maltseva N, Chang C, Jedrzejczak R, Wilamowski M, Kang S, Nicolaescu V, Randall G, Michalska K, Joachimiak A", "protein_xref_pubmed", "33564093", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "The intrinsically disordered SARS-CoV-2 nucleoprotein in dynamic complex with its viral partner nsp3a.", "Sci. Adv.", "2022", "Perez L.M., Jensen M.R., Ruigrok R.W.H., Blackledge M., Camacho-Zarco A.R., Maurin D., Salvi N., Bessa L.M., Botova M., Guseva S., Malki A., Nanao M.", "protein_xref_pubmed", "35044811", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation.", "Proc. Natl. Acad. Sci. U.S.A.", "2022", "Xu Zhang, Choi Jung-Hyun, Dai David L, Luo Jun, Ladak Reese Jalal, Li Qian, Wang Yimeng, Zhang Christine, Wiebe Shane, Liu Alex C H, Ran Xiaozhuo, Yang Jiaqi, Naeli Parisa, Garzia Aitor, Zhou Lele, Mahmood Niaz, Deng Qiyun, Elaish Mohamed, Lin Rongtuan, Mahal Lara K, Hobman Tom C, Pelletier Jerry, Alain Tommy, Vidal Silvia M, Duchaine Thomas, Mazhab-Jafari Mohammad T, Mao Xiaojuan, Jafarnejad Seyed Mehdi, Sonenberg Nahum", "protein_xref_pubmed", "35878012", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "A molecular pore spans the double membrane of the coronavirus replication organelle.", "Science", "2020", "Zheng S., Wolff G., Agard D.A., Koning R.I., Koster A.J., Snijder E.J., de Jong A.W.M., Barcena M., Gruenewald K., Laugks U., Limpens R.W.A.L., Zevenhoven-Dobbe J.C.", "protein_xref_pubmed", "32763915", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Human NLRP1 is a sensor of pathogenic coronavirus 3CL proteases in lung epithelial cells.", "Mol. Cell", "2022", "Planes R, Pinilla M, Santoni K, Hessel A, Passemar C, Lay K, Paillette P, Valadao AC, Robinson KS, Bastard P, Lam N, Fadrique R, Rossi I, Pericat D, Bagayoko S, Leon-Icaza SA, Rombouts Y, Perouzel E, Tiraby M, Zhang Q, Cicuta P, Jouanguy E, Neyrolles O, Bryant CE, Floto AR, Goujon C, Lei FZ, Martin-Blondel G, Silva S, Casanova JL, Cougoule C, Reversade B, Marcoux J, Ravet E, Meunier E", "protein_xref_pubmed", "35594856", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "Cryo-EM Structure of an Extended SARS-CoV-2 Replication and Transcription Complex Reveals an Intermediate State in Cap Synthesis.", "Cell", "2021", "Chen Y., Gao Y., Li M., Li Y., Wang H., Wang Q., Zhang Y., Zheng L., Ge J., Huang Y., Liu Z., Yan L., Yang Y., Guddat L.W., Wang T., Rao Z., Gao S., Lou Z.", "protein_xref_pubmed", "33232691", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "The SARS-CoV-2 subgenome landscape and its novel regulatory features.", "Mol. Cell", "2021", "Chen Y., Guo M., Li S., Li X., Wu K., Zhang Q., Zhou Y., Wang D., Li G., Liu Q., Yu X., Guo D., Chen M., Liu F., Yang X.L., Feng J., Lan K., Jiang A., Will S., Shi Z.L., Sajid M., Ponty Y.", "protein_xref_pubmed", "33713597", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "An atomistic model of the coronavirus replication-transcription complex as a hexamer assembled around nsp15.", "J. Biol. Chem.", "2021", "Schmitz U., Campbell E.A., Appleby T.C., Feng J.Y., Bilello J.P., Perry J.K.", "protein_xref_pubmed", "34562452", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "SARS-CoV-2 variants preferentially emerge at intrinsically disordered protein sites helping immune evasion.", "FEBS J.", "2022", "Minervini G., Carraro M., Le Mercier P., Quaglia F., Salladini E., Tosatto S.C.E.", "protein_xref_pubmed", "35108439", "protein_xref_uniprotkb", "P0DTD1" ], [ "P0DTD1-1", "How the Replication and Transcription Complex Functions in Jumping Transcription of SARS-CoV-2.", "Front. Genet.", "2022", "Chen S., Cheng Z., Li X., Yang F., Shi J., Liang J., Gao S., Ruan J., Duan G., Mi D.", "protein_xref_pubmed", "35706445", "protein_xref_uniprotkb", "P0DTD1" ], [ "A0A663DJA2-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Chen Y.-M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany.", "Microbiol. Resour. Announc.", "2020", "Huang J., Aepfelbacher M., Fischer N., Guenther T., Pfefferle S., Grundhoff A., Indenbirken D., Oestereich L., Luetgehetmann M., Noerz D.", "protein_xref_pubmed", "32499358", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity.", "Science", "2020", "Cantuti-Castelvetri L, Ojha R, Pedro LD, Djannatian M, Franz J, Kuivanen S, van der Meer F, Kallio K, Kaya T, Anastasina M, Smura T, Levanov L, Szirovicza L, Tobi A, Kallio-Kokko H, Osterlund P, Joensuu M, Meunier FA, Butcher SJ, Winkler MS, Mollenhauer B, Helenius A, Gokce O, Teesalu T, Hepojoki J, Vapalahti O, Stadelmann C, Balistreri G, Simons M", "protein_xref_pubmed", "33082293", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Severe Acute Respiratory Syndrome Coronavirus 2 from Patient with Coronavirus Disease, United States.", "Emerg. Infect. Dis.", "2020", "Li Y., Lu X., Murray J., Wang H., Wang L., Zhang J., Makino S., Gautam R., Tao Y., Narayanan K., Widen S.G., Goldsmith C., Tong S., Uehara A., Ksiazek T.G., Lokugamage K.G., Tamin A., Menachery V.D., Bullock H.A., Harcourt J., Kamili S., Lindstrom S., Lynch B., Mirchandani D., Paden C.R., Plante J.A., Plante K.S., Queen K., Sakthivel S.K., Scharton D., Schindewolf C., Thornburg N.J., Weaver S.C., Whitaker B.", "protein_xref_pubmed", "32160149", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing.", "Nature", "2020", "Cao J., Cheng K., Nguyen C., Sun R., Choi A., Garcia-Sastre A., Johnson J.R., Yin X., Teriete P., Yuan S., Schultz P.G., Nguyen T.H., Chanda S.K., De Jesus P.D., Glynne R.J., Martinez-Sobrido L., Miorin L., Mesecar A.D., Pache L., Hull M.V., Benner C., Matsunaga N., Dejosez M., Zwaka T.P., Chatterjee A.K., Yuen K.Y., Chan J.F., Poon V.K., Herbert K.M., Martin-Sancho L., Pu Y., Riva L., Albrecht R., Burgstaller-Muehlbacher S., Chang M.W., Chapman M.E., Lendy E.K., Liu W.C., Rathnasinghe R., Rubanov A., Ruppin E., Schotsaert M., Sit K.Y., Su A.I., White K.M.", "protein_xref_pubmed", "32707573", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Viable SARS-CoV-2 in the air of a hospital room with COVID-19 patients.", "Int. J. Infect. Dis.", "2020", "Wu C.Y., Alam M.M., Cherabuddi K., Eiguren-Fernandez A., Elbadry M.A., Fan Z.H., Gangwar M., Jutla A., Lauzardo M., Lednicky J.A., Loeb J.C., Mohamed K., Morris J.G. Jr., Shankar S.N., Stephenson C.J., Subramaniam K., Tilly T.B., Usmani M., Waltzek T.B.", "protein_xref_pubmed", "32949774", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Rapid incorporation of Favipiravir by the fast and permissive viral RNA polymerase complex results in SARS-CoV-2 lethal mutagenesis.", "Nat. Commun.", "2020", "Meier C., Ferron F., Canard B., Decroly E., Le N.T., Coutard B., Selisko B., Fattorini V., Huchting J., Peersen O., Piorkowski G., Shannon A., Touret F.", "protein_xref_pubmed", "32943628", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Cold-Adapted Live Attenuated SARS-Cov-2 Vaccine Completely Protects Human ACE2 Transgenic Mice from SARS-Cov-2 Infection.", "Vaccines", "2020", "Seo S.H., Jang Y.", "protein_xref_pubmed", "33022950", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Territorywide Study of Early Coronavirus Disease Outbreak, Hong Kong, China.", "Emerg. Infect. Dis.", "2021", "Yip S.P., Que T.L., Wong B.K., Liu R.W., Chan M.C., Chau S.K., Choi M.P., Fung K.S., Lao H.Y., Lee L.K., Leung K.S., Leung W.S., Lung K.C., Man Ho A.Y., Ng T.T., Ng Y.Y., Shum D.H., Sin K.M., Siu G.K., Tam K.K., To W.K., Tso E.Y., Wu A.K., Yam W.C., Yau M.C., Yip K.T.", "protein_xref_pubmed", "33350913", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Molecular characterization of SARS-CoV-2 from the first case of COVID-19 in Italy.", "Clin. Microbiol. Infect.", "2020", "Capobianchi M.R., Vairo F., Bartolini B., Bordi L., Carletti F., Castilletti C., Colavita F., Giombini E., Ippolito G., Lalle E., Maria Gruber C.E., Messina F., Nicastri E., Rueca M.", "protein_xref_pubmed", "32229288", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Possible Bat Origin of Severe Acute Respiratory Syndrome Coronavirus 2.", "Emerg. Infect. Dis.", "2020", "Zhu L., He Z., Fung J., Lau S.K.P., Woo P.C.Y., Chan T.T.Y., Fung K.S.C., Li K.S.M., Luk H.K.H., Wong A.C.P.", "protein_xref_pubmed", "32315281", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Isolation of infectious SARS-CoV-2 from urine of a COVID-19 patient.", "Emerg. Microbes Infect.", "2020", "Chen X., Chen Z., Feng L., Huang J., Huang X., Li H., Li X., Li Y., Liu X., Shi Y., Wang Y., Zhang L., Zhang Y., Zhang Z., Zhu A., Luo L., Dai J., Li F., Sun J., Zhao J., Yang Z., Zhuang Z., Huang S., Wen L., Li Y.M., Zheng K., Zhong N., Chen S.B., Zhuo J.", "protein_xref_pubmed", "32342724", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "An 81-Nucleotide Deletion in SARS-CoV-2 ORF7a Identified from Sentinel Surveillance in Arizona (January to March 2020).", "J. Virol.", "2020", "Wu L.I., Estifanos B., Halden R.U., Hogue B.G., Holland L.A., Kaelin E.A., Lim E.S., Maqsood R., Scotch M., Varsani A.", "protein_xref_pubmed", "32357959", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Nosocomial outbreak of COVID-19 pneumonia in Wuhan, China.", "Eur. Respir. J.", "2020", "Gao Y., Liu W., Wang X., Wei X., Zhang J., Zhang Z., Liu L., Xu Y., He Y., Yang B., Yang D., Zhou Q., Wang G., Zheng Y., Pan T., Chang Y., Gao Z., Ma L., Bai X., Ma X., Liang L., Zhai B., Shi H., Jiang N., Deng T., Ma W.L., Jiang N.'", "protein_xref_pubmed", "32366488", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Development of an inactivated vaccine candidate for SARS-CoV-2.", "Science", "2020", "Hu Y., Li C., Li J., Li Y., Liu J., Lu J., Wang L., Wang X., Yin Y., Zhang H., Zhang Y., Wu D., Gao Q., Xu K., Wang N., Yang M., Mao H., Deng W., Zhu L., Li Y.', Lou X., Gao H., Yin W., Gong X., Bao L., Jiang D., Ge X., Shi W., Cai F., Lv Z., Zhu L.', Qin C., Kan B., Qin C.'", "protein_xref_pubmed", "32376603", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Infection of dogs with SARS-CoV-2.", "Nature", "2020", "Poon L.L.M., Chu D.K.W., Perera R.A.P.M., Brackman C.J., Ip S.M., Law P.Y.T., Peiris M., Sims L.D., Sit T.H.C., Tam K.W.S., To E.M.W., Tsang D.N.C., Yu V.Y.T.", "protein_xref_pubmed", "32408337", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Investigation of a COVID-19 outbreak in Germany resulting from a single travel-associated primary case: a case series.", "Lancet Infect. Dis.", "2020", "Boehm S., Walter M., Cai W., Dangel A., Schneider J., Berger A., Drosten C., Ackermann N., Reich A., Katz K., Haas W., Hoch M., Muller N., Buchholz U., Sing A., An der Heiden M., Antwerpen M., Bengs K., Boehmer M.M., Boender T.S., Corman V.M., Eberle U., Fingerle V., Grahl A., Hamouda O., Hoermansdorfer S., Ippisch S., Konrad R., Liebl B., Marosevic D.V., Muehlemann B., Poertner K., Protzer U., Rexroth U., Treis B., Veith T., Wicklein B., Woelfel R., Woudenberg T., Zapf A., Zeitlmann N.", "protein_xref_pubmed", "32422201", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Associations of Early COVID-19 Cases in San Francisco with Domestic and International Travel.", "Clin. Infect. Dis.", "2020", "Gu W., Wang C., Miller S., Chiu C., Deng X., Hsu E., Bushnell B., Federman S., Reyes K., Sotomayor-Gonzalez A.", "protein_xref_pubmed", "32436571", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "SARS-CoV-2 Phylogenetic Analysis, Lazio Region, Italy, February-March 2020.", "Emerg. Infect. Dis.", "2020", "Capobianchi M.R., Vairo F., Bartolini B., Bordi L., Carletti F., Castilletti C., Colavita F., Di Caro A., Giombini E., Gruber C.E.M., Ippolito G., Lalle E., Matusali G., Messina F., Rueca M.", "protein_xref_pubmed", "32459984", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East.", "Emerg. Microbes Infect.", "2020", "Lee K.M., Gong Y.N., Liu Y.C., Yang C.T., Kuo R.L., Chen K.F., Huang S.Y., Shih S.R., Chen G.W., Chiu C.H., Hsiao M.J., Huang C.G., Huang H.I., Huang P.N., Huang P.W., Liu M.T., Liu Y.C.', Tsao K.C., Yang J.R., Yang S.L.", "protein_xref_pubmed", "32543353", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "A mouse-adapted model of SARS-CoV-2 to test COVID-19 countermeasures.", "Nature", "2020", "Brown A.J., West A., Huang E., Schaefer A., Glenn J.S., Gralinski L.E., Montgomery S.A., Hou Y.J., Baric R.S., Dinnon K.H. III, Edwards C.E., Leist S.R., Adams L.E., Bryant M.D., Choong I.C., Gully K.L., Martinez D.R., Sheahan T.P., Yount B.L. Jr.", "protein_xref_pubmed", "32854108", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "A Mouse-Adapted SARS-CoV-2 Induces Acute Lung Injury and Mortality in Standard Laboratory Mice.", "Cell", "2020", "Brown A.J., West A., Okuda K., Schaefer A., Boucher R.C., Moorman N.J., Gralinski L.E., Montgomery S.A., Hou Y.J., Baric R.S., Dinnon K.H. III, Edwards C.E., Leist S.R., Tse L.V., Fritch E.J., Gully K.L., Sanders W., Scobey T., Sheahan T.P.", "protein_xref_pubmed", "33031744", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "From People to Panthera: Natural SARS-CoV-2 Infection in Tigers and Lions at the Bronx Zoo.", "MBio", "2020", "Wang H., Wang L., Thomas P., Fang Y., Yuan F., Ivancic M., Goodman L., Tong S., McCann C., Smith D.C., Queen K., Bartlett S.L., Bergeson N.H., Calle P.P., Caserta L.C., Cronk B.D., Delaney M.A., Diel D.G., Elvinger F., Franzen K., Fredrickson R., Goodrich E., Ingerman K., Jenkins-Moore M., Killian M.L., Laverack M., Mauldin M.R., McAloose D., Mitchell P.K., Mozingo K., Olmstead C., Slavinski S., Stokol T., Sykes J.M., Terio K., Torchetti M.K., Zec S.", "protein_xref_pubmed", "33051368", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer.", "Cell", "2020", "Anzick S.L., Bowden T.A., Martens C., Barbian K., de Wit E., Avanzato V.A., Fischer E.R., Judson S.D., Matson M.J., Munster V.J., Pryce R., Riedo F.X., Seifert S.N., Williamson B.N.", "protein_xref_pubmed", "33248470", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "The SARS-CoV-2 ORF10 is not essential in vitro or in vivo in humans.", "PLoS Pathog.", "2020", "Pyrc K., Sanak M., Branicki W., Dabrowska A., Kowalski M., Labaj P.P., Milewska A., Owczarek K., Pancer K.", "protein_xref_pubmed", "33301543", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "A household case evidences shorter shedding of SARS-CoV-2 in naturally infected cats compared to their human owners.", "Emerg. Microbes Infect.", "2021", "Khan Z., Garcia-Sastre A., Gutierrez A., Miorin L., van Bakel H., Dutta J., Holmes E.C., Kehrer T., Agueero B., Almonacid L.I., Ariyama N., Berrios F., Brito B., Espinoza P., Galarce N., Gonzalez-Reiche A.S., Levican J., Medina R.A., Neira V., Retamal P., Valdes V., van de Guchte A.", "protein_xref_pubmed", "33317424", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Earliest detection to date of SARS-CoV-2 in Florida: Identification together with influenza virus on the main entry door of a university building, February 2020.", "PLoS ONE", "2021", "Marini S., Sabo-Attwood T., Alam M.M., Loeb J.C., Morris J.G. Jr., Salemi M., Stephenson C.J., Subramaniam K., Waltzek T.B., Elbadry M., Hentschel S., Lednicky J., Tagliamonte M.S.", "protein_xref_pubmed", "33439885", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "A deletion in SARS-CoV-2 ORF7 identified in COVID-19 outbreak in Uruguay.", "Transbound. Emerg. Dis.", "2021", "Perez R., Ramos N., Panzera Y., Arbiza J., Calleros L., Chiparelli H., Coppola L., Delfraro A., Frabasile S., Fuques E., Goni N., Grecco S., Marandino A., Mogdasy C., Ramas V., Sorhouet C., Techera C., Tomas G.", "protein_xref_pubmed", "33501730", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Molecular Evolution of Human Coronavirus 229E in Hong Kong and a Fatal COVID-19 Case Involving Coinfection with a Novel Human Coronavirus 229E Genogroup.", "MSphere", "2021", "Zhu L., Fung J., Lau S.K.P., Woo P.C.Y., Yuen K.Y., Tsang O.T.Y., Aw-Yong K.L., Chan T.T.Y., Lee R.A., Li K.S.M., Luk H.K.H., Lung D.C., Tang J.Y.M., Wong A.C.P., Wong E.Y.M., Wong S.C.Y., Yip C.C.Y.", "protein_xref_pubmed", "33568452", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "SARS-CoV-2 Positivity on or After 9 Days Among Quarantined Student Contacts of Confirmed Cases.", "JAMA", "2021", "Ryan K.A., Nelson E.J., Lednicky J.A., Morris J.G. Jr., Crowe S.R., McKune S.L., Myers P.D.", "protein_xref_pubmed", "33605978", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research.", "PLoS Biol.", "2021", "Davis C., Johnson C., Liu X., Wang S., Alessi D.R., Dunlop J.I., Tong L., Wilson S.J., Li K., Toth R., Johnson N., Reid E., Davies P., Patel A.H., Wyatt P.G., Stewart M., Hughes J., Orr A., Mahalingam S., Hastie C.J., McFarlane S., Pinto R.M., Robertson D.L., Kohl A., Nichols J., Cole S.J., Goodman N., Geyer A., Elliott M., Zaid A., Merits A., Varjak M., De Lorenzo G., Loney C., Rihn S.J., Stewart D.G., Kerr K., Carmichael S., Cameron-Ruiz N., Herder V., Palmarini M., Sugrue E., Turnbull M.L., Wickenhagen A., Brennan B., Alexander A.J.T., Baillie C., Bakshi S., Brown F., Brunker K., Bryden S.R., Burness K.A., Cowton V.M., Donald C.L., Dorward M., Fares M., Freitas J.R., Furnon W., Gestuveo R.J., Giesel D., Goldfarb D.M., Gunson R., Leech H., Lello L.S., Lieber G., Lingala R., Mair D., McElwee M.J., Nomikou K., Orton R.J., Parr Y.A., Raggett S., Royle J., Shepherd J.G., Smollett K., Szemiel A.M., Taggart A., Thomson E.C., Torrie L.S., Wilkinson S.G., Zusinaite E., da Silva Filipe A.", "protein_xref_pubmed", "33630831", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "In-Frame 12-Nucleotide Deletion within Open Reading Frame 3a in a SARS-CoV-2 Strain Isolated from a Patient Hospitalized with COVID-19.", "Microbiol. Resour. Announc.", "2021", "Cherabuddi K., Elbadry M.A., Lednicky J.A., Morris J.G. Jr., Subramaniam K., Waltzek T.B., Tagliamonte M.S.", "protein_xref_pubmed", "33632859", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Early Diffusion of SARS-CoV-2 Infection in the Inner Area of the Italian Sardinia Island.", "Front. Microbiol.", "2020", "Monne M., Piras G., Casu G., Asproni R., Fancello T., Fiamma M., Grandi N., Lo Maglio I., Mameli G., Palmas A.D., Tramontano E.", "protein_xref_pubmed", "33643227", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Emergence of a Severe Acute Respiratory Syndrome Coronavirus 2 Virus Variant With Novel Genomic Architecture in Hong Kong.", "Clin. Infect. Dis.", "2021", "Wong S.C., Wu T.C., Kok K.H., Tse H., Yuen K.Y., To K.K., Choi G.K., Ip K.F., Lung D.C.", "protein_xref_pubmed", "33675655", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data.", "Genome Res.", "2021", "Davis C., Johnson K., Wang D., Chopra A., Tong L., Gaudieri S., Parker M.D., Bennett S., Brown R., Evans C., Mallal S., Kohl A., Smith N., Nichols J., Sreenu V.B., Tucker R.M., Partridge D.G., de Silva T.I., Angyal A., Aranday-Cortes E., Carrilero L., Filipe A.D.S., Green L.R., Groves D., Heffer J., Keeley A.J., Leary S., Lindsey B.B., Parsons P., Raza M., Shepherd J.G., Thomson E.C., Wyles M.", "protein_xref_pubmed", "33722935", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "A0A663DJA2-1", "Genomic variation and epidemiology of SARS-CoV-2 importation and early circulation in Israel.", "PLoS ONE", "2021", "Mor O., Erster O., Mandelboim M., Bucris E., Drori Y., Mendelson E., Pando R., Sofer D., Zuckerman N.S.", "protein_xref_pubmed", "33770098", "protein_xref_uniprotkb", "A0A663DJA2" ], [ "P0DTG1-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Chen Y.-M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTG1" ], [ "P0DTG1-1", "Coding potential and sequence conservation of SARS-CoV-2 and related animal viruses.", "Infect. Genet. Evol.", "2020", "Cagliani R., Sironi M., Clerici M., Forni D.", "protein_xref_pubmed", "32387562", "protein_xref_uniprotkb", "P0DTG1" ], [ "P0DTG1-1", "A putative new SARS-CoV protein, 3c, encoded in an ORF overlapping ORF3a.", "J. Gen. Virol.", "2020", "Firth A.E.", "protein_xref_pubmed", "32667280", "protein_xref_uniprotkb", "P0DTG1" ], [ "P0DTD3-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Chen Y.-M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTD3" ], [ "P0DTD3-1", "Characterization of accessory genes in coronavirus genomes.", "Virol. J.", "2020", "Poch O., Mayer C., Thompson J.D., Michel C.J.", "protein_xref_pubmed", "32854725", "protein_xref_uniprotkb", "P0DTD3" ], [ "P0DTD3-1", "SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes.", "Nat. Commun.", "2021", "Kellis M., Jungreis I., Sealfon R.", "protein_xref_pubmed", "33976134", "protein_xref_uniprotkb", "P0DTD3" ], [ "P0DTD3-1", "Genome-wide analyses reveal the detrimental impacts of SARS-CoV-2 viral gene Orf9c on human pluripotent stem cell-derived cardiomyocytes.", "Stem Cell Reports", "2022", "Liu J., Wang C., Wu S., Zhang Y., Chen H., Yang L., Han L., Guo S., Wan J., Doud E.H., Rubart-von der Lohe M.", "protein_xref_pubmed", "35180394", "protein_xref_uniprotkb", "P0DTD3" ], [ "P0DTD2-1", "Crystal structure of SARS-CoV-2 Orf9b in complex with human TOM70 suggests unusual virus-host interactions.", "Nat. Commun.", "2021", "Gao X, Zhu K, Qin B, Olieric V, Wang M, Cui S", "protein_xref_pubmed", "33990585", "protein_xref_uniprotkb", "P0DTD2" ], [ "P0DTD2-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Chen Y.-M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTD2" ], [ "P0DTD2-1", "SARS-CoV-2 Orf9b suppresses type I interferon responses by targeting TOM70.", "Cell. Mol. Immunol.", "2020", "Jiang HW, Zhang HN, Meng QF, Xie J, Li Y, Chen H, Zheng YX, Wang XN, Qi H, Zhang J, Wang PH, Han ZG, Tao SC", "protein_xref_pubmed", "32728199", "protein_xref_uniprotkb", "P0DTD2" ], [ "P0DTC6-1", "Overexpression of SARS-CoV-2 protein ORF6 dislocates RAE1 and NUP98 from the nuclear pore complex.", "Biochem. Biophys. Res. Commun.", "2021", "Kato K, Ikliptikawati DK, Kobayashi A, Kondo H, Lim K, Hazawa M, Wong RW", "protein_xref_pubmed", "33360543", "protein_xref_uniprotkb", "P0DTC6" ], [ "P0DTC6-1", "Molecular mechanism of SARS-CoVs Orf6 targeting the Rae1-Nup98 complex to compete with mRNA nuclear export.", "Front. Mol. Biosci.", "2022", "Li T, Wen Y, Guo H, Yang T, Yang H, Ji X", "protein_xref_pubmed", "35096974", "protein_xref_uniprotkb", "P0DTC6" ], [ "P0DTC6-1", "A new coronavirus associated with human respiratory disease in China.", "Nature", "2020", "Hu Y., Liu Y., Wang W., Zhao S., Xu L., Wu F., Yu B., Zhang Y.-L., Zhang Y.-Z., Chen Y.-M., Dai F.-H., Holmes E.C., Pei Y.-Y., Song Z.-G., Tao Z.-W., Tian J.-H., Wang Q.-M., Yuan M.-L., Zheng J.-J.", "protein_xref_pubmed", "32015508", "protein_xref_uniprotkb", "P0DTC6" ], [ "P0DTC6-1", "Evasion of Type I Interferon by SARS-CoV-2.", "Cell Rep.", "2020", "Xia H, Cao Z, Xie X, Zhang X, Chen JY, Wang H, Menachery VD, Rajsbaum R, Shi PY", "protein_xref_pubmed", "32979938", "protein_xref_uniprotkb", "P0DTC6" ] ] }, "readme": "Name\n - SARS-CoV2 Protein Citations (UniProtKB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2020-04-19T11:32:35.963024\n\nModified on\n - 2022-09-26T09:05:56.517431\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Protein Citations dataset contains publication information for sarscov2 [taxid:2697049] UniProtKB accessions that includes PMID, journal name, date and author and title. The dataset is derived from 2020-01 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sars-cov-2.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-sars-cov-2.nt\n Output Subdomain\n Name: sarscov2_protein_citations_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/sarscov2_protein_citations_uniprotkb.csv\n Name: sarscov2_protein_citations_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/sarscov2_protein_citations_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"17\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"143\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"57\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"4\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"143\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"143\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"17\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/sarscov2_protein_citations_uniprotkb.csv" }