{
    "bcoid": "GLY_000439",
    "title": "SARS-CoV2 Protein Recommended Names (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Protein Recommended Names (UniProtKB) dataset contains ...",
    "filename": "sarscov2_protein_recnames.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Recommended Names"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DTC7-1...",
                "ORF7a protei..."
            ],
            [
                "P0DTC6-1...",
                "ORF6 protein..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "recommended_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "recommended_name_full"
                },
                {
                    "type": "string",
                    "label": "recommended_name_short"
                },
                {
                    "type": "string",
                    "label": "ec_name"
                }
            ],
            [
                "P0DTC7-1",
                "ORF7a protein",
                "ORF7a",
                ""
            ],
            [
                "P0DTC6-1",
                "ORF6 protein",
                "ORF6",
                ""
            ],
            [
                "P0DTC5-1",
                "Membrane protein",
                "M",
                ""
            ],
            [
                "P0DTC4-1",
                "Envelope small membrane protein",
                "E",
                ""
            ],
            [
                "P0DTC4-1",
                "Envelope small membrane protein",
                "sM protein",
                ""
            ],
            [
                "P0DTC3-1",
                "ORF3a protein",
                "ORF3a",
                ""
            ],
            [
                "P0DTC2-1",
                "Spike glycoprotein",
                "S glycoprotein",
                ""
            ],
            [
                "P0DTC1-1",
                "Replicase polyprotein 1a",
                "pp1a",
                ""
            ],
            [
                "P0DTG1-1",
                "ORF3c protein",
                "ORF3c",
                ""
            ],
            [
                "P0DTG0-1",
                "Putative ORF3d protein",
                "",
                ""
            ],
            [
                "P0DTC9-1",
                "Nucleoprotein",
                "N",
                ""
            ],
            [
                "P0DTC8-1",
                "ORF8 protein",
                "ORF8",
                ""
            ],
            [
                "P0DTD2-1",
                "ORF9b protein",
                "ORF9b",
                ""
            ],
            [
                "P0DTD3-1",
                "Putative ORF9c protein",
                "ORF9c",
                ""
            ],
            [
                "P0DTD1-1",
                "Replicase polyprotein 1ab",
                "pp1ab",
                ""
            ],
            [
                "P0DTD8-1",
                "ORF7b protein",
                "ORF7b",
                ""
            ],
            [
                "P0DTF1-1",
                "Putative ORF3b protein",
                "ORF3b",
                ""
            ],
            [
                "A0A663DJA2-1",
                "Putative ORF10 protein",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Protein Recommended Names (UniProtKB)\n\nVersion\n   - v-2.2.1\n\nCreated on\n  - 2020-04-03T11:46:41.584409\n\nModified on\n   - 2022-09-26T09:05:56.437538\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for sarscov2 [taxid:2697049] proteins. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein recommended name\n   - protein name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/extract-from-endpoint.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-sars-cov-2.nt\n   Output Subdomain\n      Name: sarscov2_protein_recnames.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/sarscov2_protein_recnames.csv\n      Name: sarscov2_protein_recnames.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/sarscov2_protein_recnames.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"17\"\n      Name: \"recommended_name_full\"\n     Description: \"Recommended full name of the protein in the UniProtKB database\"\n      Unique Values: \"17\"\n      Name: \"recommended_name_short\"\n     Description: \"Recommended short name of the protein in UniProtKB database\"\n      Unique Values: \"17\"\n      Name: \"ec_name\"\n     Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/sarscov2_protein_recnames.csv"
}