{
    "bcoid": "GLY_000432",
    "title": "SARS-CoV1 Protein Information (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-1) Protein Information dataset contains sarscov1 [taxid:694009] UniProtKB ...",
    "filename": "sarscov1_protein_info_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome-related coronavirus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q7TFA0-1...",
                "NS8A_SARS..."
            ],
            [
                "P0C6X7-1...",
                "R1AB_SARS..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "uniprotkb_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_mass"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_length"
                }
            ],
            [
                "Q7TFA0-1",
                "NS8A_SARS",
                "4327",
                "39"
            ],
            [
                "P0C6X7-1",
                "R1AB_SARS",
                "790248",
                "7073"
            ],
            [
                "P59634-1",
                "NS6_SARS",
                "7527",
                "63"
            ],
            [
                "Q7TFA1-1",
                "NS7B_SARS",
                "5302",
                "44"
            ],
            [
                "Q7TLC7-1",
                "Y14_SARS",
                "7852",
                "70"
            ],
            [
                "P59635-1",
                "NS7A_SARS",
                "13941",
                "122"
            ],
            [
                "P59636-1",
                "ORF9B_SARS",
                "10802",
                "98"
            ],
            [
                "P59633-1",
                "NS3B_SARS",
                "17750",
                "154"
            ],
            [
                "P59637-1",
                "VEMP_SARS",
                "8361",
                "76"
            ],
            [
                "P59632-1",
                "AP3A_SARS",
                "30903",
                "274"
            ],
            [
                "P59595-1",
                "NCAP_SARS",
                "46025",
                "422"
            ],
            [
                "P59594-1",
                "SPIKE_SARS",
                "139125",
                "1255"
            ],
            [
                "P59596-1",
                "VME1_SARS",
                "25061",
                "221"
            ],
            [
                "Q80H93-1",
                "NS8B_SARS",
                "9560",
                "84"
            ],
            [
                "P0C6U8-1",
                "R1A_SARS",
                "486373",
                "4382"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Protein Information (UniProtKB)\n\nVersion\n   - v-2.2.1\n\nCreated on\n  - 2020-04-03T11:46:41.584409\n\nModified on\n   - 2022-09-26T09:05:56.469860\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) Protein Information dataset contains sarscov1 [taxid:694009] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - UniProtKB entry id\n   - UniProtKB mnemonic name\n   - protein length\n   - protein mass\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-coronavirus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-sars-coronavirus.nt\n   Output Subdomain\n      Name: sarscov1_protein_info_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/sarscov1_protein_info_uniprotkb.csv\n      Name: sarscov1_protein_info_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/sarscov1_protein_info_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"15\"\n      Name: \"uniprotkb_id\"\n     Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n      Unique Values: \"15\"\n      Name: \"uniprotkb_protein_mass\"\n     Description: \"Molecular Mass of the protein in Daltons (Da)\"\n      Unique Values: \"15\"\n      Name: \"uniprotkb_protein_length\"\n     Description: \"Length of the protein sequence\"\n      Unique Values: \"15\"",
    "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/sarscov1_protein_info_uniprotkb.csv"
}