{
    "bcoid": "GLY_000290",
    "title": "Glycan Sequences IUPAC Extended",
    "description": "The dataset provides the glycan sequences in IUPAC extended format for the associated glycans (GlyTouCan ...",
    "filename": "glycan_sequences_iupac_extended.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "IUPAC Extended format"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Sus scrofa",
            "Rattus",
            "Homo sapiens",
            "Mus musculus",
            "Saccharomyces cerevisiae",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa domesticus",
            "Dictyostelium discoideum",
            "Hepacivirus C",
            "Severe acute respiratory syndrome-related coronavirus"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "?-D-Neup5Gc-..."
            ],
            [
                "G00009BX...",
                "alpha-L-Fucp..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "sequence_iup..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "sequence_iupac_extended"
                }
            ],
            [
                "G00002CF",
                "?-D-Neup5Gc-(2->?)-?-D-Neup5Gc-(2->?)-?-D-Galp-(1->?)-?-D-Glcp-(1->"
            ],
            [
                "G00009BX",
                "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-?-D-GlcNAc"
            ],
            [
                "G00012MO",
                "beta-D-GalpNAc-(1->3)-alpha-D-Galp-(1->3)-beta-D-Galp-(1->4)-?-D-Glc"
            ],
            [
                "G00013MO",
                "beta-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-Galp-(1->4)-?-D-Glc"
            ],
            [
                "G00014MO",
                "beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Manp-(1->4)-?-D-Glc"
            ],
            [
                "G00015MO",
                "beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)-beta-D-Manp-(1->4)-?-D-Glc"
            ],
            [
                "G00016MO",
                "alpha-D-Galp-(1->4)-?-D-Gal"
            ],
            [
                "G00017IP",
                "beta-D-GalpNAc4S-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcNAc"
            ],
            [
                "G00017MO",
                "beta-D-GlcpA-(1->3)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpA-(1->3)-?-D-GlcNAc"
            ],
            [
                "G00018MO",
                "beta-D-GlcpA-(1->3)-beta-D-GalpNAc4S-(1->4)-beta-D-GlcpA-(1->3)-?-D-GalNAc4S"
            ],
            [
                "G00019MO",
                "beta-D-IdopA-(1->3)-beta-D-GalpNAc4S-(1->4)-beta-D-IdopA-(1->3)-?-D-GalNAc4S"
            ],
            [
                "G00020MO",
                "beta-D-Galp-(1->4)-beta-D-GlcpNAc6S-(1->3)-beta-D-Galp-(1->4)-?-D-GlcNAc6S"
            ],
            [
                "G00023MO",
                "beta-D-GlcpNAc3-(R)Lac-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc3-(R)Lac-(1->4)-?-D-GlcpNAc-(1->"
            ],
            [
                "G00024MO",
                "beta-D-Glcp-(1->3)-beta-D-Glcp-(1->3)-beta-D-Glcp-(1->"
            ],
            [
                "G00025AJ",
                "beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-?-D-Glc-ol"
            ],
            [
                "G00025HU",
                "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Neup5Ac-(2->?)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-Glc?NAc-(1->"
            ],
            [
                "G00025MO",
                "beta-D-Glcp-(1->4)-beta-D-Glcp-(1->4)-beta-D-Glcp-(1->4)-beta-D-Glcp-(1->"
            ],
            [
                "G00026MO",
                "alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcNAc"
            ],
            [
                "G00027JG",
                "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-beta-D-Gal?NAc-(1->"
            ],
            [
                "G00027MO",
                "alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00028MO",
                "alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcNAc"
            ],
            [
                "G00029MO",
                "beta-D-GlcpNAc-(1->2/4)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3/6)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc-(1->"
            ],
            [
                "G00030HB",
                "alpha-D-Neup5Ac-(2->3/6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00030MO",
                "beta-D-GlcpNAc-(1->2/4)-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->2/4)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcNAc"
            ],
            [
                "G00030SF",
                "alpha-D-Galf-(1->2)-alpha-D-Galf-(1->4)-beta-D-Galp-(1->"
            ],
            [
                "G00031MO",
                "beta-D-Galp-(1->3)-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00032MO",
                "beta-D-Galp-(1->3)-?-D-GalNAc"
            ],
            [
                "G00033MO",
                "beta-D-Galp-(1->3)[beta-D-GlcpNAc-(1->6)]-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00034MO",
                "beta-D-Galp-(1->3)[beta-D-GlcpNAc-(1->6)]-?-D-GalNAc"
            ],
            [
                "G00034WH",
                "alpha-D-Glcp-(1->6)-alpha-D-Glcp-(1->6)-alpha-D-Glcp-(1->6)-alpha-D-Glcp-(1->4)-alpha-D-Glcp-(1->4)-?-D-Glc"
            ],
            [
                "G00035MO",
                "beta-D-GlcpNAc-(1->3)-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00036MO",
                "beta-D-GlcpNAc-(1->3)-?-D-GalNAc"
            ],
            [
                "G00037MO",
                "beta-D-GlcpNAc-(1->3)[beta-D-GlcpNAc-(1->6)]-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00038JC",
                "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-?-D-Glc?-(1->"
            ],
            [
                "G00038MO",
                "beta-D-GlcpNAc-(1->3)[beta-D-GlcpNAc-(1->6)]-?-D-GalNAc"
            ],
            [
                "G00039MO",
                "alpha-D-GalpNAc-(1->3)-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00040MO",
                "alpha-D-GalpNAc-(1->3)-?-D-GalNAc"
            ],
            [
                "G00041IL",
                "beta-D-Galp-(1->3)-?-D-GlcpNAc-(1->3)[alpha-D-Neup5Ac-(2->6)]-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00041MO",
                "beta-D-GlcpNAc-(1->6)-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00042MO",
                "beta-D-GlcpNAc-(1->6)-?-D-GalNAc"
            ],
            [
                "G00043MO",
                "alpha-D-GalpNAc-(1->6)-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00044MO",
                "alpha-D-GalpNAc-(1->6)-?-D-GalNAc"
            ],
            [
                "G00045MO",
                "alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)-alpha-D-Manp-(1->4)-?-D-GlcN"
            ],
            [
                "G00046MO",
                "alpha-D-Galp-(1->3)-?-D-Gal"
            ],
            [
                "G00047MO",
                "beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-?-D-GlcpNAc-(1->"
            ],
            [
                "G00048MO",
                "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00049MO",
                "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1->"
            ],
            [
                "G00050MO",
                "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1->"
            ],
            [
                "G00051MO",
                "beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00052MO",
                "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00053MO",
                "alpha-D-Neup5Ac-(2->3)-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00054MO",
                "alpha-D-Neup5Ac-(2->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00055MO",
                "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00056HH",
                "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->?)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[?-L-Fucp-(1->?)]-?-D-GlcpNAc-(1->"
            ],
            [
                "G00056MO",
                "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00057MO",
                "beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00058MO",
                "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00059MO",
                "alpha-D-Galp-(1->4)-beta-D-Galp-(1->4)-beta-D-Glcp-(1->"
            ],
            [
                "G00060BT",
                "alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3)-beta-D-Manp-(1->6)]-beta-D-Manp-(1->4)-?-D-GlcNAc"
            ],
            [
                "G00060MO",
                "alpha-D-Galp-(1->4)-beta-D-Galp-(1->4)-beta-D-GalpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1->"
            ],
            [
                "G00061MO",
                "beta-D-GalpNAc-(1->3)-alpha-D-Galp-(1->4)-beta-D-Galp-(1->4)-beta-D-Glcp-(1->"
            ],
            [
                "G00062MO",
                "alpha-D-Neup5Ac-(2->3)[beta-D-GalpNAc-(1->4)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->"
            ],
            [
                "G00063MO",
                "alpha-D-Neup5Ac-(2->3)[beta-D-GalpNAc-(1->4)]-beta-D-Galp-(1->3)[alpha-D-Neup5Ac-(2->6)]-beta-D-GalpNAc-(1->"
            ],
            [
                "G00064MO",
                "alpha-D-GlcpNAc-(1->3)-beta-D-GalpNAc-(1->3)-alpha-D-Galp-(1->4)-beta-D-Galp-(1->4)-beta-D-Glcp-(1->"
            ],
            [
                "G00065MO",
                "alpha-D-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00066MO",
                "alpha-D-GalpNAc-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->"
            ],
            [
                "G00067MO",
                "beta-D-Galp-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->"
            ],
            [
                "G00068MO",
                "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->"
            ],
            [
                "G00069MO",
                "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-?-D-Glc"
            ],
            [
                "G00069YC",
                "alpha-D-GalpNAc-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)[alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-?-D-GalNAc"
            ],
            [
                "G00070MO",
                "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-?-D-Glc"
            ],
            [
                "G00071MO",
                "beta-D-Galp-(1->3)-beta-D-GalpNAc-(1->4)-beta-D-Galp-(1->4)-?-D-Glc"
            ],
            [
                "G00072MO",
                "beta-D-GalpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Galp-(1->4)-?-D-Glc"
            ],
            [
                "G00076PK",
                "alpha-D-Galp-(1->4)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00084IF",
                "alpha-D-ManfNAc-(1->"
            ],
            [
                "G00089VH",
                "alpha-D-Neup5Ac-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-beta-D-Manp-(1->3)[alpha-D-Neup5Ac-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-beta-D-Manp-(1->6)]-alpha-D-Manp-(1->4)-?-D-GlcNAc"
            ],
            [
                "G00090SL",
                "alpha-D-Manp-(1->6)-?-D-Man-ol"
            ],
            [
                "G00091RT",
                "alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->"
            ],
            [
                "G00091UN",
                "alpha-D-Neup5Ac-(2->?)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->"
            ],
            [
                "G00094SE",
                "alpha-D-Galp-(1->3)-alpha-D-GalpNAc-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->3)[beta-D-GlcpNAc-(1->3)-beta-D-GlcpNAc-(1->6)]-alpha-D-GalpNAc-(1->"
            ],
            [
                "G00097DN",
                "alpha-D-Xylp-(1->6)-alpha-D-Glcp-(1->"
            ],
            [
                "G00106LE",
                "?-D-Neup5Ac-(2->?)-?-D-Galp6S-(1->?)[?-L-Fucp-(1->?)]-?-D-GlcNAc"
            ],
            [
                "G00106LK",
                "?-?-Hex?3S-(1->?)[?-D-Neup5Ac-(2->?)]-?-?-Hex?NAc-(1->?)[?-?-Hex?-(1->?)-?-?-Hex?NAc-(1->?)]-?-?-Hex?NAc-(1->"
            ],
            [
                "G00112IO",
                "alpha-D-GalpNAc-(1->3)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-?-D-GalNAc-ol"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Sequences IUPAC Extended\n\nVersion\n   - v-2.2.1\n\nCreated on\n  - 2019-11-13T16:31:31.525156\n\nModified on\n   - 2022-10-12T16:36:30.995Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides the glycan sequences in IUPAC extended format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281). Source database: https://glytoucan.org/\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - IUPAC Extended\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_masterlist.csv\n      Name: names.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_08_17_2023/export/names.tsv\n      Name: subsumption.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_08_17_2023/export/subsumption.tsv\n   Output Subdomain\n      Name: glycan_sequences_iupac_extended.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_sequences_iupac_extended.csv\n      Name: glycan_sequences_iupac_extended.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/glycan_sequences_iupac_extended.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"38071\"\n      Name: \"sequence_iupac_extended\"\n     Description: \"Glycan sequence in an IUPAC extended format\"\n      Unique Values: \"38045\"",
    "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/glycan_sequences_iupac_extended.csv"
}