{ "bcoid": "GLY_000254", "title": "Mouse Phosphorylation Sites (UniProtKB)", "description": "The Mouse Phosphorylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical ...", "filename": "mouse_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Proteoform" ], "tag": [ "Phosphorylation Sites" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q05816-1...", "131..." ], [ "P97807-1...", "363..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q05816-1", "131", "Tyr", "", "", "protein_xref_uniprotkb", "Q05816", "protein_xref_uniprotkb", "Q05816", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "P97807-1", "363", "Ser", "", "", "protein_xref_uniprotkb", "P97807", "protein_xref_uniprotkb", "P97807", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P97807-1", "363", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P97807", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P16460-1", "87", "Tyr", "", "", "protein_xref_uniprotkb", "P16460", "protein_xref_uniprotkb", "P16460", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "P45952-1", "351", "Thr", "", "", "protein_xref_uniprotkb", "P45952", "protein_xref_uniprotkb", "P45952", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "P45952-1", "351", "Thr", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P45952", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "P27600-1", "206", "Thr", "", "", "protein_xref_uniprotkb", "P27600", "protein_xref_uniprotkb", "P27600", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q61753-1", "78", "Thr", "", "", "protein_xref_uniprotkb", "Q61753", "protein_xref_uniprotkb", "Q61753", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "Q61753-1", "78", "Thr", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q61753", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "P0DP27-1", "100", "Tyr", "", "", "protein_xref_uniprotkb", "P0DP27", "protein_xref_uniprotkb", "P0DP27", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P0DP27-1", "100", "Tyr", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P0DP27", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P0DP27-1", "100", "Tyr", "", "", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "P0DP27", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P16460-1", "180", "Ser", "", "", "protein_xref_uniprotkb", "P16460", "protein_xref_uniprotkb", "P16460", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q63810-1", "106", "Tyr", "", "", "protein_xref_uniprotkb", "Q63810", "protein_xref_uniprotkb", "Q63810", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "Q63810-1", "106", "Tyr", "", "", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "Q63810", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P06802-1", "238", "Thr", "", "", "protein_xref_uniprotkb", "P06802", "protein_xref_uniprotkb", "P06802", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P97324-1", "503", "Tyr", "", "", "protein_xref_uniprotkb", "P97324", "protein_xref_uniprotkb", "P97324", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "Q61233-1", "28", "Tyr", "", "", "protein_xref_uniprotkb", "Q61233", "protein_xref_uniprotkb", "Q61233", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "P05532-1", "571", "Tyr", "", "", "protein_xref_uniprotkb", "P05532", "protein_xref_uniprotkb", "P05532", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P05532-1", "571", "Tyr", "", "", "protein_xref_pubmed", "17947660", "protein_xref_uniprotkb", "P05532", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P0DP28-1", "100", "Tyr", "", "", "protein_xref_uniprotkb", "P0DP28", "protein_xref_uniprotkb", "P0DP28", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P0DP28-1", "100", "Tyr", "", "", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "P0DP28", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P0DP28-1", "100", "Tyr", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P0DP28", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "Q8R071-1", "195", "Ser", "", "", "protein_xref_uniprotkb", "Q8R071", "protein_xref_uniprotkb", "Q8R071", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8C6L5-1", "199", "Ser", "", "", "protein_xref_uniprotkb", "Q8C6L5", "protein_xref_uniprotkb", "Q8C6L5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P27601-1", "203", "Thr", "", "", "protein_xref_uniprotkb", "P27601", "protein_xref_uniprotkb", "P27601", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q8BGN3-1", "71", "Ser", "", "", "protein_xref_uniprotkb", "Q8BGN3", "protein_xref_uniprotkb", "Q8BGN3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P16858-1", "180", "Thr", "", "", "protein_xref_uniprotkb", "P16858", "protein_xref_uniprotkb", "P16858", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P97352-1", "32", "Ser", "", "", "protein_xref_uniprotkb", "P97352", "protein_xref_uniprotkb", "P97352", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P97352-1", "32", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P97352", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O70492-1", "72", "Ser", "", "", "protein_xref_uniprotkb", "O70492", "protein_xref_uniprotkb", "O70492", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P52840-1", "134", "Ser", "", "", "protein_xref_uniprotkb", "P52840", "protein_xref_uniprotkb", "P52840", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P16858-1", "120", "Ser", "", "", "protein_xref_uniprotkb", "P16858", "protein_xref_uniprotkb", "P16858", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P40142-1", "345", "Ser", "", "", "protein_xref_uniprotkb", "P40142", "protein_xref_uniprotkb", "P40142", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P09242-1", "110", "Ser", "", "", "protein_xref_uniprotkb", "P09242", "protein_xref_uniprotkb", "P09242", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P09242-1", "110", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P09242", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P0DP26-1", "100", "Tyr", "", "", "protein_xref_uniprotkb", "P0DP26", "protein_xref_uniprotkb", "P0DP26", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P0DP26-1", "100", "Tyr", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P0DP26", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "P0DP26-1", "100", "Tyr", "", "", "protein_xref_pubmed", "18034455", "protein_xref_uniprotkb", "P0DP26", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "Q64685-1", "366", "Tyr", "", "", "protein_xref_uniprotkb", "Q64685", "protein_xref_uniprotkb", "Q64685", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "Q8BH04-1", "304", "Ser", "", "", "protein_xref_uniprotkb", "Q8BH04", "protein_xref_uniprotkb", "Q8BH04", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q8BH04-1", "304", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q8BH04", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q7TSV4-1", "173", "Ser", "", "", "protein_xref_uniprotkb", "Q7TSV4", "protein_xref_uniprotkb", "Q7TSV4", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q7TSV4-1", "173", "Ser", "", "", "protein_xref_pubmed", "19131326", "protein_xref_uniprotkb", "Q7TSV4", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q7TSV4-1", "173", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "Q7TSV4", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P17679-1", "187", "Ser", "", "", "protein_xref_uniprotkb", "P17679", "protein_xref_uniprotkb", "P17679", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P17679-1", "187", "Ser", "", "", "protein_xref_pubmed", "8206977", "protein_xref_uniprotkb", "P17679", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "O09127-1", "615", "Tyr", "", "", "protein_xref_uniprotkb", "O09127", "protein_xref_uniprotkb", "O09127", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P06240-1", "505", "Tyr", "", "", "protein_xref_uniprotkb", "P06240", "protein_xref_uniprotkb", "P06240", "Phosphotyrosine", "Phosphotyrosine; by CSK", "" ], [ "O70161-1", "645", "Ser", "", "", "protein_xref_uniprotkb", "O70161", "protein_xref_uniprotkb", "O70161", "Phosphoserine", "Phosphoserine; by CDK5, MAPK1 and CDK1", "" ], [ "P26041-1", "558", "Thr", "", "", "protein_xref_uniprotkb", "P26041", "protein_xref_uniprotkb", "P26041", "Phosphothreonine", "Phosphothreonine; by ROCK2 and STK10", "" ], [ "A0A0B4J1G0-1", "235", "Tyr", "", "", "protein_xref_uniprotkb", "A0A0B4J1G0", "protein_xref_uniprotkb", "A0A0B4J1G0", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "A0A0B4J1G0-1", "235", "Tyr", "", "", "protein_xref_pubmed", "17558411", "protein_xref_uniprotkb", "A0A0B4J1G0", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "A0A0B4J1G0-1", "235", "Tyr", "", "", "protein_xref_uniprotkb", "A0A0B4J1G0", "protein_xref_uniprotkb", "A0A0B4J1G0", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "A0A0B4J1G0-1", "235", "Tyr", "", "", "protein_xref_pubmed", "19144319", "protein_xref_uniprotkb", "A0A0B4J1G0", "Phosphotyrosine", "Phosphotyrosine", "ECO_0007744" ], [ "O88809-1", "28", "Ser", "", "", "protein_xref_uniprotkb", "O88809", "protein_xref_uniprotkb", "O88809", "Phosphoserine", "Phosphoserine; by CDK5", "" ], [ "O70343-1", "538", "Ser", "", "", "protein_xref_uniprotkb", "O70343", "protein_xref_uniprotkb", "O70343", "Phosphoserine", "Phosphoserine; by AMPK", "" ], [ "A2AAY5-1", "25", "Tyr", "", "", "protein_xref_uniprotkb", "A2AAY5", "protein_xref_uniprotkb", "A2AAY5", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000305" ], [ "A2AAY5-1", "25", "Tyr", "", "", "protein_xref_pubmed", "19144821", "protein_xref_uniprotkb", "A2AAY5", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000305" ], [ "O88597-1", "94", "Ser", "", "", "protein_xref_uniprotkb", "O88597", "protein_xref_uniprotkb", "O88597", "Phosphoserine", "Phosphoserine; by AMPK", "" ], [ "E9Q0N2-1", "945", "Tyr", "", "", "protein_xref_uniprotkb", "E9Q0N2", "protein_xref_uniprotkb", "E9Q0N2", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "E9Q0N2-1", "945", "Tyr", "", "", "protein_xref_pubmed", "20398064", "protein_xref_uniprotkb", "E9Q0N2", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "P05532-1", "723", "Tyr", "", "", "protein_xref_uniprotkb", "P05532", "protein_xref_uniprotkb", "P05532", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P19973-1", "243", "Ser", "", "", "protein_xref_uniprotkb", "P19973", "protein_xref_uniprotkb", "P19973", "Phosphoserine", "Phosphoserine; by MAPKAPK2", "" ], [ "O35284-1", "43", "Ser", "", "", "protein_xref_uniprotkb", "O35284", "protein_xref_uniprotkb", "O35284", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "O35284-1", "43", "Ser", "", "", "protein_xref_pubmed", "12809553", "protein_xref_uniprotkb", "O35284", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P09581-1", "706", "Tyr", "", "", "protein_xref_uniprotkb", "P09581", "protein_xref_uniprotkb", "P09581", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P05622-1", "770", "Tyr", "", "", "protein_xref_uniprotkb", "P05622", "protein_xref_uniprotkb", "P05622", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "O70585-1", "11", "Thr", "", "", "protein_xref_uniprotkb", "O70585", "protein_xref_uniprotkb", "O70585", "Phosphothreonine", "Phosphothreonine; by PKA and PKC", "" ], [ "P16056-1", "1232", "Tyr", "", "", "protein_xref_uniprotkb", "P16056", "protein_xref_uniprotkb", "P16056", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P13346-1", "27", "Ser", "", "", "protein_xref_uniprotkb", "P13346", "protein_xref_uniprotkb", "P13346", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P13346-1", "27", "Ser", "", "", "protein_xref_pubmed", "16687504", "protein_xref_uniprotkb", "P13346", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P28033-1", "179", "Thr", "", "", "protein_xref_uniprotkb", "P28033", "protein_xref_uniprotkb", "P28033", "Phosphothreonine", "Phosphothreonine; by GSK3-beta", "" ], [ "P15702-1", "343", "Ser", "", "", "protein_xref_uniprotkb", "P15702", "protein_xref_uniprotkb", "P15702", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P15702-1", "343", "Ser", "", "", "protein_xref_pubmed", "17638845", "protein_xref_uniprotkb", "P15702", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P15702-1", "343", "Ser", "", "", "protein_xref_uniprotkb", "P15702", "protein_xref_uniprotkb", "P15702", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P15702-1", "343", "Ser", "", "", "protein_xref_pubmed", "21183079", "protein_xref_uniprotkb", "P15702", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P27577-1", "251", "Ser", "", "", "protein_xref_uniprotkb", "P27577", "protein_xref_uniprotkb", "P27577", "Phosphoserine", "Phosphoserine; by CaMK2", "" ], [ "P14753-1", "503", "Tyr", "", "", "protein_xref_uniprotkb", "P14753", "protein_xref_uniprotkb", "P14753", "Phosphotyrosine", "Phosphotyrosine; by JAK2", "" ], [ "O70469-1", "276", "Tyr", "", "", "protein_xref_uniprotkb", "O70469", "protein_xref_uniprotkb", "O70469", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "O70469-1", "276", "Tyr", "", "", "protein_xref_pubmed", "10508618", "protein_xref_uniprotkb", "O70469", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "P28667-1", "120", "Ser", "", "", "protein_xref_uniprotkb", "P28667", "protein_xref_uniprotkb", "P28667", "Phosphoserine", "Phosphoserine; by MAPK8", "" ], [ "P17679-1", "178", "Ser", "", "", "protein_xref_uniprotkb", "P17679", "protein_xref_uniprotkb", "P17679", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P17679-1", "178", "Ser", "", "", "protein_xref_pubmed", "8206977", "protein_xref_uniprotkb", "P17679", "Phosphoserine", "Phosphoserine", "ECO_0000269" ] ] }, "readme": "Name\n - Mouse Phosphorylation Sites (UniProtKB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2019-09-06T14:06:38.981217\n\nModified on\n - 2022-09-26T09:04:47.959542\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Phosphorylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical accessions with information on reported and predicted phosphorylation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore containing triples from the nt file and extracts as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_07_11/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"7451\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"2744\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"5\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"1\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7761\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"7461\"\n Name: \"phosphorylated_residue\"\n Description: \"The amino acid that is modified by phosphorylation\"\n Unique Values: \"5\"\n Name: \"phosphorylation_annotation\"\n Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n Unique Values: \"560\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"7\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv" }