{ "bcoid": "GLY_000229", "title": "Rat UniProtKB Xref OMA", "description": "The Rat UniProtKB Xref OMA contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Oma cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A0G2JVG5-1...", "protein_xref..." ], [ "A0A0G2JVG6-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "A0A0G2JVG5-1", "protein_xref_oma", "CDFRVRW", "" ], [ "A0A0G2JVG6-1", "protein_xref_oma", "NYTEHQS", "" ], [ "A0A8I5ZR95-1", "protein_xref_oma", "LPEMKGW", "" ], [ "P30937-1", "protein_xref_oma", "AIQCIYA", "" ], [ "P30936-1", "protein_xref_oma", "NTSSAWP", "" ], [ "F7FI04-1", "protein_xref_oma", "NIRIWDE", "" ], [ "D4A4W8-1", "protein_xref_oma", "AQYRVDH", "" ], [ "D4A4W9-1", "protein_xref_oma", "KTHAFAK", "" ], [ "D4A4W0-1", "protein_xref_oma", "TTSVCAQ", "" ], [ "D4A4W1-1", "protein_xref_oma", "TITVAFR", "" ], [ "D4A4W2-1", "protein_xref_oma", "FYWRMVS", "" ], [ "F7EN52-1", "protein_xref_oma", "IAGRTMF", "" ], [ "D4A4W4-1", "protein_xref_oma", "EEMHQYM", "" ], [ "D4A4W5-1", "protein_xref_oma", "MGSEYCH", "" ], [ "D4A4W7-1", "protein_xref_oma", "YAYKTIT", "" ], [ "A0A8I6ABX7-1", "protein_xref_oma", "CCSHHRR", "" ], [ "P01230-1", "protein_xref_oma", "YHELHFA", "" ], [ "P09006-1", "protein_xref_oma", "MFVEEQL", "" ], [ "A0A8I5ZLJ0-1", "protein_xref_oma", "QYSAETE", "" ], [ "Q6AYS7-1", "protein_xref_oma", "GTDAKQF", "" ], [ "A0JPQ1-1", "protein_xref_oma", "MVYEEFH", "" ], [ "Q9WU49-1", "protein_xref_oma", "FIQPLHG", "" ], [ "F1MAA4-1", "protein_xref_oma", "SGWKDPL", "" ], [ "A0A8L2QVZ0-1", "protein_xref_oma", "FFRHESE", "" ], [ "A0A8I6GF81-1", "protein_xref_oma", "KTLYCKN", "" ], [ "P83748-1", "protein_xref_oma", "TSEGHIC", "" ], [ "P18508-1", "protein_xref_oma", "SAHYSLC", "" ], [ "P04757-1", "protein_xref_oma", "QDTACSC", "" ], [ "E9PTQ3-1", "protein_xref_oma", "CKANDAM", "" ], [ "A0A8I5Y6V4-1", "protein_xref_oma", "FQFRRLK", "" ], [ "P84083-1", "protein_xref_oma", "MSCQSAN", "" ], [ "A0A8I6AER7-1", "protein_xref_oma", "CESVNDA", "" ], [ "Q9Z0V5-1", "protein_xref_oma", "KPAPEWE", "" ], [ "A0A0G2JYZ1-1", "protein_xref_oma", "EEDWGWG", "" ], [ "A0A8I6AVR1-1", "protein_xref_oma", "FMEEWVF", "" ], [ "Q6P6V6-1", "protein_xref_oma", "TDLNHTY", "" ], [ "D3ZIY3-1", "protein_xref_oma", "SNQRMKG", "" ], [ "D3ZIY7-1", "protein_xref_oma", "CVRITME", "" ], [ "A0A8I6GKG1-1", "protein_xref_oma", "VPPINCI", "" ], [ "A0A8I6A6H3-1", "protein_xref_oma", "WDFQNAF", "" ], [ "A0A8I5Y0D9-1", "protein_xref_oma", "GCERSAN", "" ], [ "D3ZFP5-1", "protein_xref_oma", "VECTACY", "" ], [ "D3ZFP4-1", "protein_xref_oma", "NVYPQED", "" ], [ "D3ZFP7-1", "protein_xref_oma", "SAITERC", "" ], [ "D3ZFP6-1", "protein_xref_oma", "LYWMEKL", "" ], [ "D3ZFP1-1", "protein_xref_oma", "CQTVIVG", "" ], [ "D4A131-1", "protein_xref_oma", "PQVHILE", "" ], [ "A0A1W2Q641-1", "protein_xref_oma", "RIVKTFW", "" ], [ "P09875-1", "protein_xref_oma", "CCHKFAK", "" ], [ "D4A138-1", "protein_xref_oma", "YMSVYSY", "" ], [ "A0A8I6ALX9-1", "protein_xref_oma", "RICISEQ", "" ], [ "F1LWI7-1", "protein_xref_oma", "TRETENP", "" ], [ "F1LWI8-1", "protein_xref_oma", "CAIICHP", "" ], [ "D3ZCS5-1", "protein_xref_oma", "FCVESDW", "" ], [ "D3ZCS4-1", "protein_xref_oma", "RELMCPE", "" ], [ "D3ZCS6-1", "protein_xref_oma", "ICRMILC", "" ], [ "D3ZCS1-1", "protein_xref_oma", "QWSDSLE", "" ], [ "D3ZCS3-1", "protein_xref_oma", "GKAGHRI", "" ], [ "D3ZCS9-1", "protein_xref_oma", "CSENQNY", "" ], [ "A0A0G2KAH3-1", "protein_xref_oma", "EDGHTTH", "" ], [ "D3ZUF0-1", "protein_xref_oma", "VIQCLSP", "" ], [ "D3ZUF1-1", "protein_xref_oma", "FVGCHRH", "" ], [ "A0A8I6A636-1", "protein_xref_oma", "WQWKSIV", "" ], [ "Q6P5P5-1", "protein_xref_oma", "CDMLGFG", "" ], [ "Q6P5P3-1", "protein_xref_oma", "KIYANMS", "" ], [ "D3ZXJ0-1", "protein_xref_oma", "WLVCGDP", "" ], [ "D3ZB41-1", "protein_xref_oma", "WETRWIT", "" ], [ "D3ZXJ5-1", "protein_xref_oma", "FARCDIQ", "" ], [ "D3ZZQ6-1", "protein_xref_oma", "MVDMFND", "" ], [ "A0A8I6ACH9-1", "protein_xref_oma", "DGPFQCG", "" ], [ "O35476-1", "protein_xref_oma", "EWGKQSF", "" ], [ "F1LP13-1", "protein_xref_oma", "NIHACYT", "" ], [ "A0A0G2JVZ3-1", "protein_xref_oma", "MAIICCN", "" ], [ "A0A0G2JVZ2-1", "protein_xref_oma", "QGHGEST", "" ], [ "A0A0G2JVZ0-1", "protein_xref_oma", "MCPQACT", "" ], [ "A0A0G2JVZ7-1", "protein_xref_oma", "CVWYYED", "" ], [ "A0A8I6A180-1", "protein_xref_oma", "TQYFYAN", "" ], [ "A0A8I5ZTM7-1", "protein_xref_oma", "DMGMSIP", "" ], [ "Q9QYH7-1", "protein_xref_oma", "QYQQYGR", "" ], [ "P53670-1", "protein_xref_oma", "RMHISSN", "" ], [ "D3Z813-1", "protein_xref_oma", "MALITCD", "" ], [ "Q67ER9-1", "protein_xref_oma", "LYMSNIF", "" ], [ "A0A8I6A4S8-1", "protein_xref_oma", "ANCVPPF", "" ], [ "D3ZT68-1", "protein_xref_oma", "IQEHLMR", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref OMA\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2019-09-06T14:06:38.957228\n\nModified on\n - 2022-09-26T09:04:47.902537\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref OMA contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes. \n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_oma.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_xref_oma.csv\n Name: rat_protein_xref_oma.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/rat_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"21084\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"21377\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/rat_protein_xref_oma.csv" }