{
    "bcoid": "GLY_000117",
    "title": "Human UniProtKB Xref PANTHER",
    "description": "The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...",
    "filename": "human_protein_xref_panther.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Panther cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P30613-1...",
                "protein_xref..."
            ],
            [
                "P30613-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P30613-1",
                "protein_xref_panther",
                "PTHR11817",
                "PYRUVATE KINASE"
            ],
            [
                "P30613-1",
                "protein_xref_panther",
                "PTHR11817:SF31",
                "PYRUVATE KINASE PKLR"
            ],
            [
                "Q92994-1",
                "protein_xref_panther",
                "PTHR11618:SF4",
                "TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT"
            ],
            [
                "Q92994-1",
                "protein_xref_panther",
                "PTHR11618",
                "TRANSCRIPTION INITIATION FACTOR IIB-RELATED"
            ],
            [
                "P10242-1",
                "protein_xref_panther",
                "PTHR45614",
                "MYB PROTEIN-RELATED"
            ],
            [
                "P10242-1",
                "protein_xref_panther",
                "PTHR45614:SF51",
                "MYB-LIKE DNA-BINDING PROTEIN BAS1"
            ],
            [
                "O14817-1",
                "protein_xref_panther",
                "PTHR19282:SF40",
                "TETRASPANIN-4"
            ],
            [
                "O14817-1",
                "protein_xref_panther",
                "PTHR19282",
                "TETRASPANIN"
            ],
            [
                "A2RU30-1",
                "protein_xref_panther",
                "PTHR17469:SF1",
                "PROTEIN TESPA1"
            ],
            [
                "A2RU30-1",
                "protein_xref_panther",
                "PTHR17469",
                "SPERM SPECIFIC ANTIGEN 2-RELATED"
            ],
            [
                "Q8N6H7-1",
                "protein_xref_panther",
                "PTHR45686:SF10",
                "ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 2"
            ],
            [
                "Q8N6H7-1",
                "protein_xref_panther",
                "PTHR45686",
                "ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED"
            ],
            [
                "Q96J66-1",
                "protein_xref_panther",
                "PTHR24223:SF168",
                "ATP-BINDING CASSETTE SUB-FAMILY C MEMBER 11"
            ],
            [
                "Q96J66-1",
                "protein_xref_panther",
                "PTHR24223",
                "ATP-BINDING CASSETTE SUB-FAMILY C"
            ],
            [
                "Q96J65-1",
                "protein_xref_panther",
                "PTHR24223:SF10",
                "ATP-BINDING CASSETTE SUB-FAMILY C MEMBER 12"
            ],
            [
                "Q96J65-1",
                "protein_xref_panther",
                "PTHR24223",
                "ATP-BINDING CASSETTE SUB-FAMILY C"
            ],
            [
                "Q6UW68-1",
                "protein_xref_panther",
                "PTHR46916",
                "TRANSMEMBRANE PROTEIN 205"
            ],
            [
                "Q6UW68-1",
                "protein_xref_panther",
                "PTHR46916:SF2",
                "TRANSMEMBRANE PROTEIN 205"
            ],
            [
                "Q8NC06-1",
                "protein_xref_panther",
                "PTHR23310",
                "ACYL-COA-BINDING PROTEIN, ACBP"
            ],
            [
                "Q8NC06-1",
                "protein_xref_panther",
                "PTHR23310:SF53",
                "ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 4"
            ],
            [
                "Q8IYT4-1",
                "protein_xref_panther",
                "PTHR23074:SF78",
                "KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2"
            ],
            [
                "Q8IYT4-1",
                "protein_xref_panther",
                "PTHR23074",
                "AAA DOMAIN-CONTAINING"
            ],
            [
                "Q53F39-1",
                "protein_xref_panther",
                "PTHR13315",
                "METALLO PHOSPHOESTERASE RELATED"
            ],
            [
                "Q53F39-1",
                "protein_xref_panther",
                "PTHR13315:SF0",
                "METALLOPHOSPHOESTERASE 1"
            ],
            [
                "A6NC51-1",
                "protein_xref_panther",
                "PTHR21324:SF3",
                "MODULATOR OF MACROAUTOPHAGY TMEM150B"
            ],
            [
                "A6NC51-1",
                "protein_xref_panther",
                "PTHR21324",
                "FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED"
            ],
            [
                "Q13829-1",
                "protein_xref_panther",
                "PTHR11145",
                "BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER"
            ],
            [
                "Q13829-1",
                "protein_xref_panther",
                "PTHR11145:SF17",
                "BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN 2"
            ],
            [
                "Q8NBW4-1",
                "protein_xref_panther",
                "PTHR22950:SF244",
                "SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 9"
            ],
            [
                "Q8NBW4-1",
                "protein_xref_panther",
                "PTHR22950",
                "AMINO ACID TRANSPORTER"
            ],
            [
                "Q14766-1",
                "protein_xref_panther",
                "PTHR24034",
                "EGF-LIKE DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q14766-1",
                "protein_xref_panther",
                "PTHR24034:SF89",
                "VACUOLAR-SORTING RECEPTOR 3-RELATED"
            ],
            [
                "P40424-1",
                "protein_xref_panther",
                "PTHR11850:SF108",
                "HOMEOBOX PROTEIN EXTRADENTICLE"
            ],
            [
                "P40424-1",
                "protein_xref_panther",
                "PTHR11850",
                "HOMEOBOX PROTEIN TRANSCRIPTION FACTORS"
            ],
            [
                "P40425-1",
                "protein_xref_panther",
                "PTHR11850",
                "HOMEOBOX PROTEIN TRANSCRIPTION FACTORS"
            ],
            [
                "P40425-1",
                "protein_xref_panther",
                "PTHR11850:SF50",
                "PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR 2"
            ],
            [
                "P40426-1",
                "protein_xref_panther",
                "PTHR11850:SF97",
                "PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR 3"
            ],
            [
                "P40426-1",
                "protein_xref_panther",
                "PTHR11850",
                "HOMEOBOX PROTEIN TRANSCRIPTION FACTORS"
            ],
            [
                "P40429-1",
                "protein_xref_panther",
                "PTHR11545",
                "RIBOSOMAL PROTEIN L13"
            ],
            [
                "P40429-1",
                "protein_xref_panther",
                "PTHR11545:SF3",
                "60S RIBOSOMAL PROTEIN L13A"
            ],
            [
                "P62873-1",
                "protein_xref_panther",
                "PTHR19850",
                "GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA"
            ],
            [
                "P62873-1",
                "protein_xref_panther",
                "PTHR19850:SF29",
                "GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT BETA-1"
            ],
            [
                "P11310-1",
                "protein_xref_panther",
                "PTHR48083",
                "MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED"
            ],
            [
                "P11310-1",
                "protein_xref_panther",
                "PTHR48083:SF2",
                "MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL"
            ],
            [
                "P53779-1",
                "protein_xref_panther",
                "PTHR24055:SF162",
                "MITOGEN-ACTIVATED PROTEIN KINASE 10"
            ],
            [
                "P53779-1",
                "protein_xref_panther",
                "PTHR24055",
                "MITOGEN-ACTIVATED PROTEIN KINASE"
            ],
            [
                "Q9H2I8-1",
                "protein_xref_panther",
                "PTHR46282",
                "LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN"
            ],
            [
                "Q9H2I8-1",
                "protein_xref_panther",
                "PTHR46282:SF2",
                "LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN"
            ],
            [
                "O60506-1",
                "protein_xref_panther",
                "PTHR21245:SF11",
                "HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q"
            ],
            [
                "O60506-1",
                "protein_xref_panther",
                "PTHR21245",
                "HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN"
            ],
            [
                "Q969N2-1",
                "protein_xref_panther",
                "PTHR12959",
                "GPI TRANSAMIDASE COMPONENT PIG-T-RELATED"
            ],
            [
                "Q969N2-1",
                "protein_xref_panther",
                "PTHR12959:SF11",
                "GPI TRANSAMIDASE COMPONENT PIG-T"
            ],
            [
                "P09471-1",
                "protein_xref_panther",
                "PTHR10218",
                "GTP-BINDING PROTEIN ALPHA SUBUNIT"
            ],
            [
                "P09471-1",
                "protein_xref_panther",
                "PTHR10218:SF355",
                "GUANINE NUCLEOTIDE-BINDING PROTEIN G(O) SUBUNIT ALPHA"
            ],
            [
                "P07237-1",
                "protein_xref_panther",
                "PTHR18929",
                "PROTEIN DISULFIDE ISOMERASE"
            ],
            [
                "P07237-1",
                "protein_xref_panther",
                "PTHR18929:SF101",
                "PROTEIN DISULFIDE-ISOMERASE"
            ],
            [
                "Q9NXE4-1",
                "protein_xref_panther",
                "PTHR12988",
                "SPHINGOMYELIN PHOSPHODIESTERASE 4"
            ],
            [
                "Q9NXE4-1",
                "protein_xref_panther",
                "PTHR12988:SF6",
                "SPHINGOMYELIN PHOSPHODIESTERASE 4"
            ],
            [
                "P06681-1",
                "protein_xref_panther",
                "PTHR46393:SF2",
                "COMPLEMENT C2"
            ],
            [
                "P06681-1",
                "protein_xref_panther",
                "PTHR46393",
                "SUSHI DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q9BQQ3-1",
                "protein_xref_panther",
                "PTHR12893",
                "GOLGI REASSEMBLY STACKING PROTEIN GRASP"
            ],
            [
                "Q9BQQ3-1",
                "protein_xref_panther",
                "PTHR12893:SF2",
                "GOLGI REASSEMBLY-STACKING PROTEIN 1"
            ],
            [
                "Q9Y4J8-1",
                "protein_xref_panther",
                "PTHR12268",
                "E3 UBIQUITIN-PROTEIN LIGASE KCMF1"
            ],
            [
                "Q9Y4J8-1",
                "protein_xref_panther",
                "PTHR12268:SF19",
                "DYSTROBREVIN ALPHA"
            ],
            [
                "Q92552-1",
                "protein_xref_panther",
                "PTHR21393",
                "MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S27"
            ],
            [
                "Q92552-1",
                "protein_xref_panther",
                "PTHR21393:SF0",
                "28S RIBOSOMAL PROTEIN S27, MITOCHONDRIAL"
            ],
            [
                "Q8NCN2-1",
                "protein_xref_panther",
                "PTHR46105:SF17",
                "ZINC FINGER AND BTB DOMAIN CONTAINING 34"
            ],
            [
                "Q8NCN2-1",
                "protein_xref_panther",
                "PTHR46105",
                "AGAP004733-PA"
            ],
            [
                "Q5ZPR3-1",
                "protein_xref_panther",
                "PTHR24100",
                "BUTYROPHILIN"
            ],
            [
                "Q5ZPR3-1",
                "protein_xref_panther",
                "PTHR24100:SF2",
                "CD276 ANTIGEN"
            ],
            [
                "Q9GZS3-1",
                "protein_xref_panther",
                "PTHR44090",
                "WD REPEAT-CONTAINING PROTEIN 61"
            ],
            [
                "Q9GZS3-1",
                "protein_xref_panther",
                "PTHR44090:SF1",
                "WD REPEAT-CONTAINING PROTEIN 61"
            ],
            [
                "Q9BXR3-1",
                "protein_xref_panther",
                "PTHR34313",
                "ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN-RELATED"
            ],
            [
                "Q9BXR3-1",
                "protein_xref_panther",
                "PTHR34313:SF2",
                "ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN-RELATED"
            ],
            [
                "Q969W1-1",
                "protein_xref_panther",
                "PTHR12246",
                "PALMITOYLTRANSFERASE ZDHHC16"
            ],
            [
                "Q969W1-1",
                "protein_xref_panther",
                "PTHR12246:SF13",
                "PALMITOYLTRANSFERASE ZDHHC16"
            ],
            [
                "Q13228-1",
                "protein_xref_panther",
                "PTHR23300",
                "METHANETHIOL OXIDASE"
            ],
            [
                "Q13228-1",
                "protein_xref_panther",
                "PTHR23300:SF0",
                "METHANETHIOL OXIDASE"
            ],
            [
                "P02741-1",
                "protein_xref_panther",
                "PTHR45869",
                "C-REACTIVE PROTEIN-RELATED"
            ],
            [
                "P02741-1",
                "protein_xref_panther",
                "PTHR45869:SF7",
                "C-REACTIVE PROTEIN"
            ],
            [
                "P29353-1",
                "protein_xref_panther",
                "PTHR10337:SF2",
                "SHC-TRANSFORMING PROTEIN 1"
            ],
            [
                "P29353-1",
                "protein_xref_panther",
                "PTHR10337",
                "SHC TRANSFORMING PROTEIN"
            ],
            [
                "Q5VVP1-1",
                "protein_xref_panther",
                "PTHR21859",
                "ACROSOME-SPECIFIC PROTEIN"
            ],
            [
                "Q5VVP1-1",
                "protein_xref_panther",
                "PTHR21859:SF55",
                "SPERMATOGENESIS-ASSOCIATED PROTEIN 31A1-RELATED"
            ]
        ]
    },
    "readme": "Name\n   - Human UniProtKB Xref PANTHER\n\nVersion\n   - v-2.2.1\n\nCreated on\n  - 2019-03-15T15:04:33.347577\n\nModified on\n   - 2022-09-26T08:56:48.455309\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n   Keywords\n   - protein family\n   - PANTHER\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-homo-sapiens.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-homo-sapiens.nt\n   Output Subdomain\n      Name: human_protein_xref_panther.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_protein_xref_panther.csv\n      Name: human_protein_xref_panther.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_protein_xref_panther.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"19558\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"26206\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"22560\"",
    "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/human_protein_xref_panther.csv"
}