{ "bcoid": "GLY_000116", "title": "Mouse UniProtKB Xref OrthoDB", "description": "The Mouse UniProtKB Xref OrthoDB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_orthodb.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Orthodb cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_orthodb", "3078144at2759", "" ], [ "Q8BH27-1", "protein_xref_orthodb", "5491831at2759", "" ], [ "Q8BH26-1", "protein_xref_orthodb", "5383730at2759", "" ], [ "Q80WT5-1", "protein_xref_orthodb", "5402549at2759", "" ], [ "Q80T32-1", "protein_xref_orthodb", "1114672at2759", "" ], [ "B2RXV4-1", "protein_xref_orthodb", "1382276at2759", "" ], [ "E9Q3P4-1", "protein_xref_orthodb", "5363462at2759", "" ], [ "A5H0M4-1", "protein_xref_orthodb", "4846362at2759", "" ], [ "P03899-1", "protein_xref_orthodb", "5487322at2759", "" ], [ "O35153-1", "protein_xref_orthodb", "5355409at2759", "" ], [ "P03893-1", "protein_xref_orthodb", "5390400at2759", "" ], [ "Q9QYH9-1", "protein_xref_orthodb", "5342809at2759", "" ], [ "P52479-1", "protein_xref_orthodb", "55585at2759", "" ], [ "P02762-1", "protein_xref_orthodb", "4635611at2759", "" ], [ "Q9QYH6-1", "protein_xref_orthodb", "3128316at2759", "" ], [ "Q08AU9-1", "protein_xref_orthodb", "5256596at2759", "" ], [ "Q08AU7-1", "protein_xref_orthodb", "3818412at2759", "" ], [ "Q5EBH1-1", "protein_xref_orthodb", "4260488at2759", "" ], [ "Q80YU0-1", "protein_xref_orthodb", "5382186at2759", "" ], [ "Q5SRT8-1", "protein_xref_orthodb", "3680242at2759", "" ], [ "P70414-1", "protein_xref_orthodb", "462435at2759", "" ], [ "P70412-1", "protein_xref_orthodb", "3017755at2759", "" ], [ "A0A0U1RNG7-1", "protein_xref_orthodb", "2912088at2759", "" ], [ "P70419-1", "protein_xref_orthodb", "202750at2759", "" ], [ "Q9EP78-1", "protein_xref_orthodb", "3031241at2759", "" ], [ "Q9EP79-1", "protein_xref_orthodb", "4113734at2759", "" ], [ "Q9EP72-1", "protein_xref_orthodb", "4215044at2759", "" ], [ "Q9EP73-1", "protein_xref_orthodb", "5315576at2759", "" ], [ "Q9EP71-1", "protein_xref_orthodb", "5477337at2759", "" ], [ "Q9EP75-1", "protein_xref_orthodb", "1611592at2759", "" ], [ "Q8VF62-1", "protein_xref_orthodb", "5401587at2759", "" ], [ "Q3UHI0-1", "protein_xref_orthodb", "5360472at2759", "" ], [ "S4R213-1", "protein_xref_orthodb", "5479071at2759", "" ], [ "Q91VV4-1", "protein_xref_orthodb", "5398783at2759", "" ], [ "P53702-1", "protein_xref_orthodb", "36084at2759", "" ], [ "O08911-1", "protein_xref_orthodb", "158564at2759", "" ], [ "Q80WC9-1", "protein_xref_orthodb", "76882at2759", "" ], [ "O08912-1", "protein_xref_orthodb", "202750at2759", "" ], [ "O08915-1", "protein_xref_orthodb", "11153at2759", "" ], [ "O08914-1", "protein_xref_orthodb", "731186at2759", "" ], [ "O08917-1", "protein_xref_orthodb", "5486670at2759", "" ], [ "Q80WC3-1", "protein_xref_orthodb", "5401688at2759", "" ], [ "O08918-1", "protein_xref_orthodb", "3032827at2759", "" ], [ "Q80WC1-1", "protein_xref_orthodb", "3684979at2759", "" ], [ "Q80WC7-1", "protein_xref_orthodb", "2891604at2759", "" ], [ "Q9JHY4-1", "protein_xref_orthodb", "3558236at2759", "" ], [ "A0A3Q4EGJ1-1", "protein_xref_orthodb", "4849099at2759", "" ], [ "Q8BYW1-1", "protein_xref_orthodb", "48967at2759", "" ], [ "G5E8Q8-1", "protein_xref_orthodb", "3876300at2759", "" ], [ "Q66GT5-1", "protein_xref_orthodb", "1046951at2759", "" ], [ "P50429-1", "protein_xref_orthodb", "2913702at2759", "" ], [ "Q8BTJ4-1", "protein_xref_orthodb", "1366859at2759", "" ], [ "P50427-1", "protein_xref_orthodb", "2913702at2759", "" ], [ "P59708-1", "protein_xref_orthodb", "167355at2759", "" ], [ "E9PYR1-1", "protein_xref_orthodb", "3016290at2759", "" ], [ "P04760-1", "protein_xref_orthodb", "5489962at2759", "" ], [ "P59808-1", "protein_xref_orthodb", "5403637at2759", "" ], [ "F8VQK3-1", "protein_xref_orthodb", "2898719at2759", "" ], [ "Q9R1N9-1", "protein_xref_orthodb", "4271163at2759", "" ], [ "A2AT96-1", "protein_xref_orthodb", "5316363at2759", "" ], [ "Q3V3Q4-1", "protein_xref_orthodb", "5360740at2759", "" ], [ "Q3V3Q7-1", "protein_xref_orthodb", "2878701at2759", "" ], [ "Q9D516-1", "protein_xref_orthodb", "23709at2759", "" ], [ "Q9D517-1", "protein_xref_orthodb", "921703at2759", "" ], [ "Q9D513-1", "protein_xref_orthodb", "3147175at2759", "" ], [ "Q9D518-1", "protein_xref_orthodb", "2906167at2759", "" ], [ "Q9D519-1", "protein_xref_orthodb", "5264986at2759", "" ], [ "Q8K2M0-1", "protein_xref_orthodb", "3412953at2759", "" ], [ "Q8K2M3-1", "protein_xref_orthodb", "5491490at2759", "" ], [ "P21661-1", "protein_xref_orthodb", "5474719at2759", "" ], [ "O55087-1", "protein_xref_orthodb", "448298at2759", "" ], [ "F6ZPB0-1", "protein_xref_orthodb", "2996885at2759", "" ], [ "P58462-1", "protein_xref_orthodb", "5385885at2759", "" ], [ "A2RSY6-1", "protein_xref_orthodb", "3146970at2759", "" ], [ "Q8CB67-1", "protein_xref_orthodb", "2909633at2759", "" ], [ "Q8VC03-1", "protein_xref_orthodb", "2959353at2759", "" ], [ "Q8VC04-1", "protein_xref_orthodb", "5353335at2759", "" ], [ "P22727-1", "protein_xref_orthodb", "2874082at2759", "" ], [ "P59672-1", "protein_xref_orthodb", "25046at2759", "" ], [ "Q8BGW1-1", "protein_xref_orthodb", "5396564at2759", "" ], [ "Q8BGW0-1", "protein_xref_orthodb", "4338399at2759", "" ], [ "Q8BGW3-1", "protein_xref_orthodb", "5324482at2759", "" ], [ "Q8BGW2-1", "protein_xref_orthodb", "5401012at2759", "" ], [ "Q8BGW4-1", "protein_xref_orthodb", "23695at2759", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref OrthoDB\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2019-03-15T14:58:32.333977\n\nModified on\n - 2022-09-26T08:56:48.461098\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref OrthoDB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology.\n\nDescription Domain\n Keywords\n - orthologs\n - OrthoDB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_orthodb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_protein_xref_orthodb.csv\n Name: mouse_protein_xref_orthodb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_protein_xref_orthodb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20062\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"10228\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/mouse_protein_xref_orthodb.csv" }