{ "bcoid": "GLY_000100", "title": "Mouse UniProtKB Xref ChEMBL", "description": "The Mouse UniprotKB Xref ChEMBL contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_chembl.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Chembl cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P52479-1...", "protein_xref..." ], [ "Q9EP73-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P52479-1", "protein_xref_chembl", "CHEMBL4879440", "" ], [ "Q9EP73-1", "protein_xref_chembl", "CHEMBL4523448", "" ], [ "O08911-1", "protein_xref_chembl", "CHEMBL2111473", "" ], [ "O08914-1", "protein_xref_chembl", "CHEMBL3455", "" ], [ "Q6T3U4-1", "protein_xref_chembl", "CHEMBL1075296", "" ], [ "Q8BGW1-1", "protein_xref_chembl", "CHEMBL3611964", "" ], [ "Q9WUZ9-1", "protein_xref_chembl", "CHEMBL4523501", "" ], [ "Q67BT3-1", "protein_xref_chembl", "CHEMBL3769294", "" ], [ "P27467-1", "protein_xref_chembl", "CHEMBL5617", "" ], [ "P83093-1", "protein_xref_chembl", "CHEMBL4296085", "" ], [ "Q9R001-1", "protein_xref_chembl", "CHEMBL4879523", "" ], [ "Q6QIY3-1", "protein_xref_chembl", "CHEMBL5158", "" ], [ "P05532-1", "protein_xref_chembl", "CHEMBL2034798", "" ], [ "Q61618-1", "protein_xref_chembl", "CHEMBL1075269", "" ], [ "Q61614-1", "protein_xref_chembl", "CHEMBL2286", "" ], [ "Q61616-1", "protein_xref_chembl", "CHEMBL3071", "" ], [ "O35454-1", "protein_xref_chembl", "CHEMBL2176794", "" ], [ "O08663-1", "protein_xref_chembl", "CHEMBL1075272", "" ], [ "O09131-1", "protein_xref_chembl", "CHEMBL4523122", "" ], [ "O35344-1", "protein_xref_chembl", "CHEMBL4879412", "" ], [ "P22437-1", "protein_xref_chembl", "CHEMBL2649", "" ], [ "P09690-1", "protein_xref_chembl", "CHEMBL3137264", "" ], [ "P09690-1", "protein_xref_chembl", "CHEMBL3038460", "" ], [ "P42225-1", "protein_xref_chembl", "CHEMBL1667670", "" ], [ "Q9EPK8-1", "protein_xref_chembl", "CHEMBL6126", "" ], [ "Q9JLF1-1", "protein_xref_chembl", "CHEMBL2094133", "" ], [ "Q9Z0Y2-1", "protein_xref_chembl", "CHEMBL4378", "" ], [ "Q9Z0Y9-1", "protein_xref_chembl", "CHEMBL2189152", "" ], [ "P57787-1", "protein_xref_chembl", "CHEMBL4802065", "" ], [ "Q8R0X7-1", "protein_xref_chembl", "CHEMBL5009", "" ], [ "Q9JL06-1", "protein_xref_chembl", "CHEMBL4523464", "" ], [ "P55086-1", "protein_xref_chembl", "CHEMBL3734647", "" ], [ "P43432-1", "protein_xref_chembl", "CHEMBL2176814", "" ], [ "Q9JIM1-1", "protein_xref_chembl", "CHEMBL1287611", "" ], [ "Q6X1Y6-1", "protein_xref_chembl", "CHEMBL3232696", "" ], [ "P70658-1", "protein_xref_chembl", "CHEMBL1250365", "" ], [ "Q03311-1", "protein_xref_chembl", "CHEMBL2528", "" ], [ "P09242-1", "protein_xref_chembl", "CHEMBL2660", "" ], [ "Q5QD14-1", "protein_xref_chembl", "CHEMBL3784908", "" ], [ "Q5QD11-1", "protein_xref_chembl", "CHEMBL2176792", "" ], [ "O88587-1", "protein_xref_chembl", "CHEMBL3286068", "" ], [ "Q9CR29-1", "protein_xref_chembl", "CHEMBL4879507", "" ], [ "P04919-1", "protein_xref_chembl", "CHEMBL4523166", "" ], [ "Q923J1-1", "protein_xref_chembl", "CHEMBL3714706", "" ], [ "O70423-1", "protein_xref_chembl", "CHEMBL4727", "" ], [ "O70421-1", "protein_xref_chembl", "CHEMBL4879419", "" ], [ "Q05D44-1", "protein_xref_chembl", "CHEMBL4879453", "" ], [ "Q9CWU4-1", "protein_xref_chembl", "CHEMBL4879508", "" ], [ "Q9WVE8-1", "protein_xref_chembl", "CHEMBL2176817", "" ], [ "Q99MB1-1", "protein_xref_chembl", "CHEMBL2146340", "" ], [ "P20852-1", "protein_xref_chembl", "CHEMBL4085", "" ], [ "Q9JHI9-1", "protein_xref_chembl", "CHEMBL4523462", "" ], [ "P24063-1", "protein_xref_chembl", "CHEMBL1075188", "" ], [ "P00186-1", "protein_xref_chembl", "CHEMBL1671611", "" ], [ "P00184-1", "protein_xref_chembl", "CHEMBL6171", "" ], [ "Q9WU19-1", "protein_xref_chembl", "CHEMBL4295985", "" ], [ "Q8BSK8-1", "protein_xref_chembl", "CHEMBL5429", "" ], [ "O08705-1", "protein_xref_chembl", "CHEMBL2073713", "" ], [ "Q3UUQ7-1", "protein_xref_chembl", "CHEMBL3259507", "" ], [ "Q9QZT4-1", "protein_xref_chembl", "CHEMBL5361", "" ], [ "O88566-1", "protein_xref_chembl", "CHEMBL1255128", "" ], [ "Q8VEB1-1", "protein_xref_chembl", "CHEMBL3721302", "" ], [ "P33609-1", "protein_xref_chembl", "CHEMBL2797", "" ], [ "P30558-1", "protein_xref_chembl", "CHEMBL4523212", "" ], [ "P30557-1", "protein_xref_chembl", "CHEMBL4336", "" ], [ "Q62165-1", "protein_xref_chembl", "CHEMBL3739252", "" ], [ "P97494-1", "protein_xref_chembl", "CHEMBL2366483", "" ], [ "Q8BMT9-1", "protein_xref_chembl", "CHEMBL1255153", "" ], [ "P97821-1", "protein_xref_chembl", "CHEMBL3454", "" ], [ "P97823-1", "protein_xref_chembl", "CHEMBL3259479", "" ], [ "P99024-1", "protein_xref_chembl", "CHEMBL4739682", "" ], [ "Q64018-1", "protein_xref_chembl", "CHEMBL4295860", "" ], [ "P47936-1", "protein_xref_chembl", "CHEMBL5373", "" ], [ "Q5GIG6-1", "protein_xref_chembl", "CHEMBL4879467", "" ], [ "P00920-1", "protein_xref_chembl", "CHEMBL3689", "" ], [ "Q63932-1", "protein_xref_chembl", "CHEMBL3885565", "" ], [ "Q80SU6-1", "protein_xref_chembl", "CHEMBL4295882", "" ], [ "Q9D358-1", "protein_xref_chembl", "CHEMBL3593153", "" ], [ "O89084-1", "protein_xref_chembl", "CHEMBL2111373", "" ], [ "P63085-1", "protein_xref_chembl", "CHEMBL2207", "" ], [ "P63080-1", "protein_xref_chembl", "CHEMBL4296058", "" ], [ "P34152-3", "protein_xref_chembl", "CHEMBL1075288", "" ], [ "Q9R053-1", "protein_xref_chembl", "CHEMBL4523482", "" ], [ "P0DP26-1", "protein_xref_chembl", "CHEMBL3562176", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref ChEMBL\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2019-03-15T12:09:44.596916\n\nModified on\n - 2022-09-26T08:56:48.459129\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniprotKB Xref ChEMBL contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to ChEMBL database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - ChEMBL or ChEMBLdb is a manually curated chemical database of bioactive molecules with drug-like properties.\n\nDescription Domain\n Keywords\n - bioactivity\n - ChEMBL\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to ChEMBL database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_chembl.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_protein_xref_chembl.csv\n Name: mouse_protein_xref_chembl.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_protein_xref_chembl.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1245\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1208\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/mouse_protein_xref_chembl.csv" }