{ "bcoid": "GLY_000088", "title": "Mouse Protein Recommended Names (UniProtKB)", "description": "The Mouse Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for mouse ...", "filename": "mouse_protein_recnames.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Protein Recommended Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH24-1...", "Transmembran..." ], [ "Q8BH27-1...", "Multiple epi..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q8BH24-1", "Transmembrane 9 superfamily member 4", "", "" ], [ "Q8BH27-1", "Multiple epidermal growth factor-like domains protein 9", "Multiple EGF-like domains protein 9", "" ], [ "Q8BH26-1", "Lysosomal enzyme trafficking factor", "", "" ], [ "Q80WT5-1", "Aftiphilin", "", "" ], [ "B2RXV4-1", "Heme transporter FLVCR1", "", "" ], [ "P03899-1", "NADH-ubiquinone oxidoreductase chain 3", "", "7.1.1.2" ], [ "O35153-1", "BET1-like protein", "", "" ], [ "P03893-1", "NADH-ubiquinone oxidoreductase chain 2", "", "7.1.1.2" ], [ "Q9QYH9-1", "Tumor necrosis factor ligand superfamily member 14", "", "" ], [ "P52479-1", "Ubiquitin carboxyl-terminal hydrolase 10", "", "3.4.19.12" ], [ "P02762-1", "Major urinary protein 6", "MUP 6", "" ], [ "Q9QYH6-1", "Melanoma-associated antigen D1", "", "" ], [ "Q08AU9-1", "UPF0450 protein C17orf58 homolog", "", "" ], [ "Q08AU7-1", "Myeloid-associated differentiation marker-like protein 2", "", "" ], [ "Q5EBH1-1", "Ras association domain-containing protein 5", "", "" ], [ "Q80YU0-1", "Protein ABHD16B", "", "3.-.-.-" ], [ "Q5SRT8-1", "Cyclin-J-like protein", "", "" ], [ "P70414-1", "Sodium/calcium exchanger 1", "", "" ], [ "P70412-1", "CUB and zona pellucida-like domain-containing protein 1", "CUB and ZP domain-containing protein 1", "" ], [ "P70419-1", "Polypeptide N-acetylgalactosaminyltransferase 3", "", "2.4.1.41" ], [ "Q9EP78-1", "Carbohydrate sulfotransferase 7", "", "2.8.2.-" ], [ "Q9EP78-1", "Carbohydrate sulfotransferase 7", "", "2.8.2.17" ], [ "Q9EP79-1", "Vomeronasal type-1 receptor 52", "", "" ], [ "Q3URK3-1", "Methylcytosine dioxygenase TET1", "", "1.14.11.80" ], [ "Q9EP72-1", "ER membrane protein complex subunit 7", "", "" ], [ "Q9EP73-1", "Programmed cell death 1 ligand 1", "PD-L1", "" ], [ "Q9EP73-1", "Programmed cell death 1 ligand 1", "PDCD1 ligand 1", "" ], [ "Q9EP73-1", "Programmed cell death 1 ligand 1", "Programmed death ligand 1", "" ], [ "Q9EP71-1", "Ankycorbin", "", "" ], [ "Q9EP75-1", "Leukotriene-B4 omega-hydroxylase 3", "", "1.14.14.94" ], [ "Q8VF62-1", "Olfactory receptor", "", "" ], [ "P53702-1", "Holocytochrome c-type synthase", "", "4.4.1.17" ], [ "O08911-1", "Mitogen-activated protein kinase 12", "MAP kinase 12", "2.7.11.24" ], [ "O08911-1", "Mitogen-activated protein kinase 12", "MAPK 12", "2.7.11.24" ], [ "Q80WC9-1", "Beta-alanine-activating enzyme", "", "6.2.1.-" ], [ "O08912-1", "Polypeptide N-acetylgalactosaminyltransferase 1", "", "2.4.1.41" ], [ "O08915-1", "AH receptor-interacting protein", "AIP", "" ], [ "O08914-1", "Fatty-acid amide hydrolase 1", "", "3.5.1.99" ], [ "O08917-1", "Flotillin-1", "", "" ], [ "Q80WC3-1", "Trinucleotide repeat-containing gene 18 protein", "", "" ], [ "O08918-1", "Cyclin-G2", "", "" ], [ "Q80WC1-1", "Ubinuclein-2", "", "" ], [ "Q80WC7-1", "Arf-GAP domain and FG repeat-containing protein 2", "", "" ], [ "Q9JHY4-1", "WAP four-disulfide core domain protein 15B", "", "" ], [ "P19070-1", "Complement receptor type 2", "Cr2", "" ], [ "Q8BYW1-1", "Rho GTPase-activating protein 25", "", "" ], [ "G5E8Q8-1", "Adhesion G protein-coupled receptor F5", "", "" ], [ "Q66GT5-1", "Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1", "", "3.1.3.27" ], [ "P50429-1", "Arylsulfatase B", "ASB", "3.1.6.12" ], [ "Q8BTJ4-1", "Bis(5'-adenosyl)-triphosphatase enpp4", "", "3.6.1.29" ], [ "P50427-1", "Steryl-sulfatase", "", "3.1.6.2" ], [ "P59708-1", "Splicing factor 3B subunit 6", "", "" ], [ "F8VQK3-1", "guanylate cyclase", "", "4.6.1.2" ], [ "Q9R1N9-1", "Collagen alpha-1(XIII) chain", "", "" ], [ "A2AT96-1", "Olfactory receptor", "", "" ], [ "Q3V3Q4-1", "Inteferon-activable protein 208", "", "" ], [ "Q3V3Q7-1", "Phosphofurin acidic cluster sorting protein 2", "PACS-2", "" ], [ "Q6T3U4-1", "NPC1-like intracellular cholesterol transporter 1", "", "" ], [ "Q9D516-1", "Probable splicing factor YJU2B", "", "" ], [ "Q9D517-1", "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "", "2.3.1.51" ], [ "Q9D513-1", "Meiosis-specific with OB domain-containing protein", "", "3.1.-.-" ], [ "Q9D518-1", "Protein FAM227B", "", "" ], [ "Q8K2M0-1", "Large ribosomal subunit protein mL38", "", "" ], [ "Q8K2M3-1", "SRR1-like protein", "", "" ], [ "P21661-1", "Neuroendocrine convertase 2", "NEC 2", "3.4.21.94" ], [ "D3Z6Q9-1", "Bridging integrator 2", "", "" ], [ "A2RSY6-1", "TRMT1-like protein", "", "2.1.1.-" ], [ "Q8CB67-1", "Low-density lipoprotein receptor-related protein 11", "LRP-11", "" ], [ "Q8VC03-1", "Echinoderm microtubule-associated protein-like 3", "EMAP-3", "" ], [ "Q8VC04-1", "Transmembrane protein 106A", "", "" ], [ "P05524-1", "Fibroblast growth factor 3", "FGF-3", "" ], [ "P22727-1", "Protein Wnt-6", "", "" ], [ "Q8BGW1-1", "Alpha-ketoglutarate-dependent dioxygenase FTO", "", "" ], [ "Q8BGW0-1", "Protein THEMIS", "", "" ], [ "Q8BGW3-1", "Class E basic helix-loop-helix protein 23", "bHLHe23", "" ], [ "Q8BGW2-1", "WW domain binding protein 1-like", "", "" ], [ "Q8BGW4-1", "DDB1- and CUL4-associated factor 12-like protein 2", "", "" ], [ "Q8BGW6-1", "Serine/threonine-protein kinase 32A", "", "2.7.11.1" ], [ "Q8BGW9-1", "Beta-defensin 29", "BD-29", "" ], [ "Q8BGW9-1", "Beta-defensin 29", "mBD-29", "" ], [ "Q8BGW8-1", "Transcription cofactor vestigial-like protein 2", "Vgl-2", "" ], [ "Q497P3-1", "Nuclear protein 2", "", "" ], [ "Q3U3I9-1", "Zinc finger protein 865", "", "" ], [ "A2AAE1-1", "Bridge-like lipid transfer protein family member 1", "", "" ] ] }, "readme": "Name\n - Mouse Protein Recommended Names (UniProtKB)\n\nVersion\n - v-2.2.1\n\nCreated on\n - 2019-01-23T17:21:05.957692\n\nModified on\n - 2022-09-26T08:48:18.870276\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for mouse [taxid:10090] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_recnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_protein_recnames.csv\n Name: mouse_protein_recnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/mouse_protein_recnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18460\"\n Name: \"recommended_name_full\"\n Description: \"Recommended full name of the protein in the UniProtKB database\"\n Unique Values: \"17215\"\n Name: \"recommended_name_short\"\n Description: \"Recommended short name of the protein in UniProtKB database\"\n Unique Values: \"5146\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"1353\"", "downloadurl": "/ln2data/releases/data/v-2.2.1/reviewed/mouse_protein_recnames.csv" }