{
    "object_id": "https://biocomputeobject.org/GLY_000529/v-2.2.1",
    "spec_version": "1.3.0",
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Homo sapiens",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Disease GlyCosmos",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "",
        "name": "Human Protein Diseases (GlyCosmos)",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "affiliation": "",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Not Applicable",
                "email": ""
            },
            {
                "name": "Jingyue Wu",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "jingyue.wu@email.gwu.edu"
            }
        ],
        "created": "2020-09-24T13:34:03.947890",
        "modified": "2022-09-26T09:08:12.748887",
        "version": "v-2.2.1"
    },
    "description_domain": {
        "keywords": [
            "Gene",
            "Protein",
            "Disease",
            "GlyCosmos"
        ],
        "pipeline_steps": [
            {
                "name": "",
                "step_number": 0,
                "version": "",
                "input_list": [],
                "output_list": [],
                "prerequisite": [],
                "description": "The file is downloaded from the GlyCosmos database directly. The following steps are done to generate the final output file: 1. Mapping gene_id to UniProtKB accession from input file 1 2) Map the dd_uri to mim_id and disease name from input file 2 3) Map mim_id to doid and mongo ids using input file 3. "
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/",
                    "filename": ""
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "usability_domain": [
        "The file contain disease data associated to protein/gene downloaded from GlyCosmos database. [https://glycosmos.org/homes/download]. "
    ],
    "etag": "dd8b386001329f5e5287c51972d5b964",
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "filename": "human_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "protein_disease_idmap.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/protein_disease_idmap.csv"
                }
            },
            {
                "uri": {
                    "filename": "glycosmos_gdgdb.csv",
                    "uri": "https:/data.glygen.org/ln2downloads/glycosmos/04_08_2021/glycosmos_gdgdb.csv"
                }
            },
            {
                "uri": {
                    "filename": "ggdonto.ttl",
                    "uri": "https:/data.glygen.org/ln2downloads/glycosmos/04_08_2021/graph-1/ggdonto.ttl"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_protein_disease_glycosmos.csv",
                    "filename": "human_protein_disease_glycosmos.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.2.1/reviewed/human_protein_disease_glycosmos.stat.csv",
                    "filename": "human_protein_disease_glycosmos.stat.csv"
                }
            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {}
    }
}