{
  "bco_id": "http://data.glygen.org/GLY_000680",
  "checksum": "7667088c29370ff57806069e4121d6ad",
  "bco_spec_version": "1.3.0",
  "provenance_domain": {
    "name": "Fruitfly Glycosylation Sites (GlyConnect) ",
    "version": "1.12.3",
    "created": "2022-09-02T13:45:34.833060",
    "modified": "2022-09-02T13:45:53.747680",
    "contributors": [
      {
        "orcid": "",
        "affiliation": "The George Washington University",
        "contribution": [
          "createdBy"
        ],
        "name": "Jeet Vora",
        "email": "jeetvora@gwu.edu"
      },
      {
        "orcid": "",
        "affiliation": "The George Washington University",
        "contribution": [
          "createdBy"
        ],
        "name": "Robel Kahsay",
        "email": "rykahsay@gwu.edu"
      },
      {
        "orcid": "",
        "affiliation": "GlyConnect",
        "contribution": [
          "contributedBy"
        ],
        "name": "Frederique Lisacek",
        "email": "frederique.lisacek@sib.swiss"
      },
      {
        "orcid": "",
        "affiliation": "GlyConnect",
        "contribution": [
          "contributedBy"
        ],
        "name": "Julien Mariethoz",
        "email": "julien.mariethoz@sib.swiss"
      },
      {
        "orcid": "",
        "affiliation": "The George Washington University",
        "contribution": [
          "createdBy"
        ],
        "name": "Karina Martinez",
        "email": "karinamartinez@gwu.edu"
      }
    ],
    "license": "https://creativecommons.org/licenses/by/4.0/"
  },
  "usability_domain": [
    "The Fruitfly Glycosylation Sites (GlyConnect) dataset contains fruitfly [taxid:7227] only GlyTouCan Glycan accessions and other info from the GlyConnect database (https://glyconnect.expasy.org/; PMID: 30574787).A json file was derived through GlyConnect API (https://glyconnect.expasy.org/api/docs/index.html?url=/api/assets/swagger.json#/Glycosylation/listGlycosylationsAsJson) (Query: taxonomy:Drosophila melanogaster). The dataset currently does not contain any glycosylation (protein and site info). If you use this dataset please provide proper attribution to GlyConnect and GlyGen."
  ],
  "extension_domain": {
    "fhir_extension": [],
    "scm_extension": {
      "scm_repository": "",
      "scm_type": "git",
      "scm_commit": "",
      "scm_path": ""
    },
    "additional_license": {
      "data_license": "https://creativecommons.org/licenses/by/4.0/",
      "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
    },
    "dataset_categories": [
      {
        "category_value": "Drosophila melanogaster",
        "category_name": "species"
      },
      {
        "category_value": "Proteoform",
        "category_name": "molecule"
      },
      {
        "category_value": "Glycosylation Sites",
        "category_name": "tags"
      },
      {
        "category_value": "csv",
        "category_name": "file_type"
      },
      {
        "category_value": "Reviewed",
        "category_name": "status"
      },
      {
        "category_value": "internal",
        "category_name": "scope"
      }
    ]
  },
  "description_domain": {
    "keywords": [
      "glycosylation",
      "reported glycosylation"
    ],
    "pipeline_steps": [
      {
        "step_number": 1,
        "name": "make-proteoform-dataset.py",
        "description": "The script loads the GlyTouCan glycans data and other information from the input JSON file and extracts it. The dataset currently does not contain any glycosylation(protein and site info)",
        "version": "",
        "prerequisite": [],
        "input_list": [
          {
            "access_time": "",
            "uri": "https://data.glygen.org/ln2data/releases/data/v-1.12.3/source/glyconnect_fruitfly.json",
            "filename": "glyconnect_fruitfly.json"
          },
          {
            "access_time": "",
            "sha1_chksum": "",
            "uri": "https://data.glygen.org/ln2data/releases/data/v-1.12.3/reviewed/glycan_masterlist.csv",
            "filename": "glycan_masterlist.csv"
          }
        ],
        "output_list": [
          {
            "access_time": "",
            "sha1_chksum": "",
            "uri": "https://data.glygen.org/ln2wwwdata/logs/fruitfly_proteoform_glycosylation_sites_glyconnect.1.log",
            "filename": "fruitfly_proteoform_glycosylation_sites_glyconnect.1.log"
          },
          {
            "access_time": "",
            "uri": "https://data.glygen.org/ln2data/releases/data/v-1.12.3/reviewed/fruitfly_proteoform_glycosylation_sites_glyconnect.csv",
            "filename": "fruitfly_proteoform_glycosylation_sites_glyconnect.csv"
          }
        ]
      }
    ]
  },
  "execution_domain": {
    "script": [
      {
        "uri": {
          "access_time": "",
          "sha1_chksum": "",
          "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py",
          "filename": "make-proteoform-dataset.py"
        }
      }
    ],
    "script_driver": "manual",
    "software_prerequisites": [
      {
        "name": "Python",
        "version": "2.7.5",
        "uri": {
          "access_time": "",
          "sha1_chksum": "",
          "uri": "https://www.python.org/download/releases/2.7.5/"
        }
      }
    ],
    "external_data_endpoints": [],
    "environment_variables": {}
  },
  "parametric_domain": [
    {
      "param": "",
      "value": "",
      "step": ""
    }
  ],
  "io_domain": {
    "input_subdomain": [
      {
        "uri": {
          "access_time": "",
          "sha1_chksum": "",
          "uri": "https://data.glygen.org/ln2data/releases/data/v-1.12.3/source/glyconnect_fruitfly.json",
          "filename": "glyconnect_fruitfly.json"
        }
      },
      {
        "uri": {
          "access_time": "",
          "sha1_chksum": "",
          "uri": "https://data.glygen.org/ln2data/releases/data/v-1.12.3/reviewed/glygen_masterlist.csv",
          "filename": "glygen_masterlist.csv"
        }
      }
    ],
    "output_subdomain": [
      {
        "mediatype": "csv",
        "uri": {
          "access_time": "",
          "sha1_chksum": "",
          "uri": "https://data.glygen.org/ln2data/releases/data/v-1.12.3/reviewed/fruitfly_proteoform_glycosylation_sites_glyconnect.csv",
          "filename": "fruitfly_proteoform_glycosylation_sites_glyconnect.csv"
        }
      },
      {
        "mediatype": "",
        "uri": {
          "access_time": "",
          "sha1_chksum": "",
          "uri": "https://data.glygen.org/ln2wwwdata/logs/fruitfly_proteoform_glycosylation_sites_glyconnect.1.log",
          "filename": "fruitfly_proteoform_glycosylation_sites_glyconnect.1.log"
        }
      },
      {
        "mediatype": "csv",
        "uri": {
          "access_time": "",
          "sha1_chksum": "",
          "uri": "https://data.glygen.org/ln2data/releases/data/v-1.12.3/reviewed/fruitfly_proteoform_glycosylation_sites_glyconnect.stat.csv",
          "filename": "fruitfly_proteoform_glycosylation_sites_glyconnect.stat.csv"
        }
      }
    ]
  },
  "error_domain": {
    "empirical_error": {},
    "algorithmic_error": {},
    "emperical_error": {}
  }
}