[ { "id": "O65554-1.168.168", "start_pos": 168, "end_pos": 168, "uniprot_canonical_ac": "O65554-1", "length": 441, "uniprot_id": "CIPK6_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 6", "refseq_ac": "NP_194825", "refseq_name": "SOS3-interacting protein 3", "gene_name": "CIPK6", "gene_names_uniprotkb": "CIPK6; F6I18.130; PKS4; SIP3; SnRK3.14", "gene_names_refseq": "ATCIPK6; CBL-INTERACTING PROTEIN KINASE 6; CIPK6; F6I18.130; F6I18_130; SIP3; SNF1-RELATED PROTEIN KINASE 3.14; SNRK3.14; SOS3-interacting protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65554", "url": "https://www.uniprot.org/uniprotkb/O65554" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65554", "url": "https://www.uniprot.org/uniprotkb/O65554", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KPENLLLDEEGNLKVTDFGL", "down_seq": "AFTEHLKQDGLLHTTCGTPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O65554", "url": "https://www.uniprot.org/uniprotkb/O65554" } ], "site_lbl": "Ser168" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O65554-1.182.182", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65554-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "O65554-1", "length": 441, "uniprot_id": "CIPK6_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 6", "refseq_ac": "NP_194825", "refseq_name": "SOS3-interacting protein 3", "gene_name": "CIPK6", "gene_names_uniprotkb": "CIPK6; F6I18.130; PKS4; SIP3; SnRK3.14", "gene_names_refseq": "ATCIPK6; CBL-INTERACTING PROTEIN KINASE 6; CIPK6; F6I18.130; F6I18_130; SIP3; SNF1-RELATED PROTEIN KINASE 3.14; SNRK3.14; SOS3-interacting protein 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65554", "url": "https://www.uniprot.org/uniprotkb/O65554" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O65554", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65554" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "O65554", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65554", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GSSTGLLHGRYELGRLLGHG", "down_seq": "FAKVYHARNIQTGKSVAMKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65554", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65554" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr34" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.248.248", "start_pos": 248, "end_pos": 248, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WGFFGGFAPLPRKTANDEDK", "down_seq": "YNSDITRLFCVEKGQANPVE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr248" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "M", "down_seq": "VSMRDLDPAFQGAGQKAGIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser2" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.445.445", "start_pos": 445, "end_pos": 445, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YSYPGEEKEEVLIGTWFGKQ", "down_seq": "VEEERGSAVSMASKMVESMK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser445" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.743.743", "start_pos": 743, "end_pos": 743, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KSAMHGNSFQRKLKIVKNGG", "down_seq": "PVADKPKRRTPASYGGRASV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr743" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.773.773", "start_pos": 773, "end_pos": 773, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPASYGGRASVPDKSQQRSR", "down_seq": "MSFSPDRVRVRGRSPAFNAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser773" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O65570-1.775.775", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O65570-1.777.777", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O65570-1.787.787", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.775.775", "start_pos": 775, "end_pos": 775, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASYGGRASVPDKSQQRSRSM", "down_seq": "FSPDRVRVRGRSPAFNALAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser775" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O65570-1.773.773", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O65570-1.777.777", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O65570-1.787.787", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.777.777", "start_pos": 777, "end_pos": 777, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" }, { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YGGRASVPDKSQQRSRSMSF", "down_seq": "PDRVRVRGRSPAFNALAATF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser777" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O65570-1.773.773", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O65570-1.775.775", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O65570-1.787.787", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O65570-1.796.796", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.787.787", "start_pos": 787, "end_pos": 787, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" }, { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQQRSRSMSFSPDRVRVRGR", "down_seq": "PAFNALAATFESQNARNLST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser787" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O65570-1.773.773", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O65570-1.775.775", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O65570-1.777.777", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O65570-1.796.796", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O65570-1.806.806", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O65570-1.807.807", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.796.796", "start_pos": 796, "end_pos": 796, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FSPDRVRVRGRSPAFNALAA", "down_seq": "FESQNARNLSTPPPVVRKLY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr796" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O65570-1.777.777", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O65570-1.787.787", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O65570-1.806.806", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O65570-1.807.807", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.806.806", "start_pos": 806, "end_pos": 806, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" }, { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "O65570-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570-1" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSPAFNALAATFESQNARNL", "down_seq": "TPPPVVRKLYPRSVTPDSSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser806" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O65570-1.787.787", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O65570-1.796.796", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O65570-1.807.807", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O65570-1.821.821", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.807.807", "start_pos": 807, "end_pos": 807, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPAFNALAATFESQNARNLS", "down_seq": "PPPVVRKLYPRSVTPDSSKF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr807" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O65570-1.787.787", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O65570-1.796.796", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O65570-1.806.806", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O65570-1.821.821", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.821.821", "start_pos": 821, "end_pos": 821, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NARNLSTPPPVVRKLYPRSV", "down_seq": "PDSSKFAPAPKSSAIASRSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr821" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O65570-1.806.806", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O65570-1.807.807", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.863.863", "start_pos": 863, "end_pos": 863, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FEKIPPQEPSIPKPVKASPK", "down_seq": "PESPAPESNSKEQEEKKEND", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr863" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.888.888", "start_pos": 888, "end_pos": 888, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APESNSKEQEEKKENDKEEG", "down_seq": "MSSRIESLTIQEDAKEGVED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65570", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65570" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser888" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O65570-1.890.890", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65570-1.890.890", "start_pos": 890, "end_pos": 890, "uniprot_canonical_ac": "O65570-1", "length": 974, "uniprot_id": "VILI4_ARATH", "protein_name": "Villin-4", "refseq_ac": "NP_001190869", "refseq_name": "villin 4", "gene_name": "VLN4", "gene_names_uniprotkb": "VLN4; F6G3.190; F9N11.10", "gene_names_refseq": "ATVLN4; F9N11.10; F9N11_10; VLN4; villin 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESNSKEQEEKKENDKEEGSM", "down_seq": "SRIESLTIQEDAKEGVEDEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O65570", "url": "https://www.uniprot.org/uniprotkb/O65570" } ], "site_lbl": "Ser890" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "248", "end_pos": "248" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "445", "end_pos": "445" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "773", "end_pos": "773" }, { "start_pos": "775", "end_pos": "775" }, { "start_pos": "777", "end_pos": "777" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "796", "end_pos": "796" }, { "start_pos": "806", "end_pos": "806" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "821", "end_pos": "821" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "890", "end_pos": "890" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O65570-1.888.888", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65572-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "O65572-1", "length": 538, "uniprot_id": "CCD1_ARATH", "protein_name": "Carotenoid 9,10(9',10')-cleavage dioxygenase 1", "refseq_ac": "NP_191911", "refseq_name": "carotenoid cleavage dioxygenase 1", "gene_name": "CCD1", "gene_names_uniprotkb": "CCD1; MAA21_150; NC1; NCED1", "gene_names_refseq": "ATCCD1; ATNCED1; CAROTENOID CLEAVAGE DIOXYGENASE 1; CCD1; NCED1; carotenoid cleavage dioxygenase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65572", "url": "https://www.uniprot.org/uniprotkb/O65572" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65572", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65572" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65572", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65572", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAEKL", "down_seq": "DGSSIISVHPRPSKGFSSKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65572", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65572" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65583-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "O65583-1", "length": 469, "uniprot_id": "UKL4_ARATH", "protein_name": "Uridine kinase-like protein 4", "refseq_ac": "NP_001320072", "refseq_name": "uridine kinase-like 4", "gene_name": "UKL4", "gene_names_uniprotkb": "UKL4; M3E9.60; UPT1", "gene_names_refseq": "M3E9.60; M3E9_60; UKL4; uridine kinase-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65583", "url": "https://www.uniprot.org/uniprotkb/O65583" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O65583", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65583" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O65583", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65583", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGSKSVVDMIEAA", "down_seq": "RAHFSGLHVNGHMNGLEPSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65583", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65583" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser14" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O65583-1.5.5", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65583-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "O65583-1", "length": 469, "uniprot_id": "UKL4_ARATH", "protein_name": "Uridine kinase-like protein 4", "refseq_ac": "NP_001320072", "refseq_name": "uridine kinase-like 4", "gene_name": "UKL4", "gene_names_uniprotkb": "UKL4; M3E9.60; UPT1", "gene_names_refseq": "M3E9.60; M3E9_60; UKL4; uridine kinase-like 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65583", "url": "https://www.uniprot.org/uniprotkb/O65583" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65583", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65583" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65583", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65583", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGSK", "down_seq": "VVDMIEAASRAHFSGLHVNG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65583", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65583" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O65583-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65686-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "O65686-1", "length": 113, "uniprot_id": "RS16A_ARATH", "protein_name": "Small ribosomal subunit protein bS16cy", "refseq_ac": "NP_195188", "refseq_name": "small subunit ribosomal protein 16", "gene_name": "RPS16-1", "gene_names_uniprotkb": "RPS16-1; S16-2; SSR16; T4L20.200", "gene_names_refseq": "RIBOSOMAL PROTEIN S16; SSR16; T4L20.200; T4L20_200; small subunit ribosomal protein 16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65686", "url": "https://www.uniprot.org/uniprotkb/O65686" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65686", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65686" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65686", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65686", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VESMLFRAGLIPPKPMVVVG", "down_seq": "KNGQKSTSQHVSPITGEILN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65686", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65686" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser93" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65717-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "O65717-1", "length": 716, "uniprot_id": "CNGC1_ARATH", "protein_name": "Cyclic nucleotide-gated ion channel 1", "refseq_ac": "NP_200125", "refseq_name": "cyclic nucleotide gated channel 1", "gene_name": "CNGC1", "gene_names_uniprotkb": "CNGC1; MFH8.6", "gene_names_refseq": "ATCNGC1; CNGC1; CYCLIC NUCLEOTIDE-GATED CHANNEL 1; MFH8.6; MFH8_6; cyclic nucleotide gated channel 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65717", "url": "https://www.uniprot.org/uniprotkb/O65717" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNFRQEKFVRFQDWKSDKTS", "down_seq": "DVEYSGKNEIQTGIFQRTIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "714", "end_pos": "714" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O65717-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65717-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "O65717-1", "length": 716, "uniprot_id": "CNGC1_ARATH", "protein_name": "Cyclic nucleotide-gated ion channel 1", "refseq_ac": "NP_200125", "refseq_name": "cyclic nucleotide gated channel 1", "gene_name": "CNGC1", "gene_names_uniprotkb": "CNGC1; MFH8.6", "gene_names_refseq": "ATCNGC1; CNGC1; CYCLIC NUCLEOTIDE-GATED CHANNEL 1; MFH8.6; MFH8_6; cyclic nucleotide gated channel 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65717", "url": "https://www.uniprot.org/uniprotkb/O65717" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKFVRFQDWKSDKTSSDVEY", "down_seq": "GKNEIQTGIFQRTISSISDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "714", "end_pos": "714" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O65717-1.21.21", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65717-1.507.507", "start_pos": 507, "end_pos": 507, "uniprot_canonical_ac": "O65717-1", "length": 716, "uniprot_id": "CNGC1_ARATH", "protein_name": "Cyclic nucleotide-gated ion channel 1", "refseq_ac": "NP_200125", "refseq_name": "cyclic nucleotide gated channel 1", "gene_name": "CNGC1", "gene_names_uniprotkb": "CNGC1; MFH8.6", "gene_names_refseq": "ATCNGC1; CNGC1; CYCLIC NUCLEOTIDE-GATED CHANNEL 1; MFH8.6; MFH8_6; cyclic nucleotide gated channel 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65717", "url": "https://www.uniprot.org/uniprotkb/O65717" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "FEKMDEQLLDALCDRLQPVL", "down_seq": "TEESYIVREGDPVDEMLFIM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Tyr507" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "714", "end_pos": "714" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O65717-1.508.508", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O65717-1.511.511", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O65717-1.512.512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65717-1.508.508", "start_pos": 508, "end_pos": 508, "uniprot_canonical_ac": "O65717-1", "length": 716, "uniprot_id": "CNGC1_ARATH", "protein_name": "Cyclic nucleotide-gated ion channel 1", "refseq_ac": "NP_200125", "refseq_name": "cyclic nucleotide gated channel 1", "gene_name": "CNGC1", "gene_names_uniprotkb": "CNGC1; MFH8.6", "gene_names_refseq": "ATCNGC1; CNGC1; CYCLIC NUCLEOTIDE-GATED CHANNEL 1; MFH8.6; MFH8_6; cyclic nucleotide gated channel 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65717", "url": "https://www.uniprot.org/uniprotkb/O65717" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EKMDEQLLDALCDRLQPVLY", "down_seq": "EESYIVREGDPVDEMLFIMR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Thr508" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "714", "end_pos": "714" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O65717-1.507.507", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O65717-1.511.511", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O65717-1.512.512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65717-1.511.511", "start_pos": 511, "end_pos": 511, "uniprot_canonical_ac": "O65717-1", "length": 716, "uniprot_id": "CNGC1_ARATH", "protein_name": "Cyclic nucleotide-gated ion channel 1", "refseq_ac": "NP_200125", "refseq_name": "cyclic nucleotide gated channel 1", "gene_name": "CNGC1", "gene_names_uniprotkb": "CNGC1; MFH8.6", "gene_names_refseq": "ATCNGC1; CNGC1; CYCLIC NUCLEOTIDE-GATED CHANNEL 1; MFH8.6; MFH8_6; cyclic nucleotide gated channel 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65717", "url": "https://www.uniprot.org/uniprotkb/O65717" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEQLLDALCDRLQPVLYTEE", "down_seq": "YIVREGDPVDEMLFIMRGKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Ser511" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "714", "end_pos": "714" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O65717-1.507.507", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O65717-1.508.508", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O65717-1.512.512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65717-1.512.512", "start_pos": 512, "end_pos": 512, "uniprot_canonical_ac": "O65717-1", "length": 716, "uniprot_id": "CNGC1_ARATH", "protein_name": "Cyclic nucleotide-gated ion channel 1", "refseq_ac": "NP_200125", "refseq_name": "cyclic nucleotide gated channel 1", "gene_name": "CNGC1", "gene_names_uniprotkb": "CNGC1; MFH8.6", "gene_names_refseq": "ATCNGC1; CNGC1; CYCLIC NUCLEOTIDE-GATED CHANNEL 1; MFH8.6; MFH8_6; cyclic nucleotide gated channel 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65717", "url": "https://www.uniprot.org/uniprotkb/O65717" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EQLLDALCDRLQPVLYTEES", "down_seq": "IVREGDPVDEMLFIMRGKLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Tyr512" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "714", "end_pos": "714" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O65717-1.507.507", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O65717-1.508.508", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O65717-1.511.511", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65717-1.714.714", "start_pos": 714, "end_pos": 714, "uniprot_canonical_ac": "O65717-1", "length": 716, "uniprot_id": "CNGC1_ARATH", "protein_name": "Cyclic nucleotide-gated ion channel 1", "refseq_ac": "NP_200125", "refseq_name": "cyclic nucleotide gated channel 1", "gene_name": "CNGC1", "gene_names_uniprotkb": "CNGC1; MFH8.6", "gene_names_refseq": "ATCNGC1; CNGC1; CYCLIC NUCLEOTIDE-GATED CHANNEL 1; MFH8.6; MFH8_6; cyclic nucleotide gated channel 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65717", "url": "https://www.uniprot.org/uniprotkb/O65717" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RMPERMPPMLLQKPAEPDFN", "down_seq": "DD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65717" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser714" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "714", "end_pos": "714" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65719-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "O65719-1", "length": 649, "uniprot_id": "HSP7C_ARATH", "protein_name": "Heat shock 70 kDa protein 3", "refseq_ac": "NP_001189847", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "HSP70-3", "gene_names_uniprotkb": "HSP70-3; F11F8; F3L24.33; HSC70-3; HSC70-G7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65719", "url": "https://www.uniprot.org/uniprotkb/O65719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MRIINEPTAAAIAYGLDKKA", "down_seq": "SVGEKNVLIFDLGGGTFDVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr194" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O65719-1.195.195", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65719-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "O65719-1", "length": 649, "uniprot_id": "HSP7C_ARATH", "protein_name": "Heat shock 70 kDa protein 3", "refseq_ac": "NP_001189847", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "HSP70-3", "gene_names_uniprotkb": "HSP70-3; F11F8; F3L24.33; HSC70-3; HSC70-G7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65719", "url": "https://www.uniprot.org/uniprotkb/O65719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RIINEPTAAAIAYGLDKKAT", "down_seq": "VGEKNVLIFDLGGGTFDVSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser195" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O65719-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65719-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "O65719-1", "length": 649, "uniprot_id": "HSP7C_ARATH", "protein_name": "Heat shock 70 kDa protein 3", "refseq_ac": "NP_001189847", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "HSP70-3", "gene_names_uniprotkb": "HSP70-3; F11F8; F3L24.33; HSC70-3; HSC70-G7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65719", "url": "https://www.uniprot.org/uniprotkb/O65719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DVSLLTIEEGIFEVKATAGD", "down_seq": "HLGGEDFDNRMVNHFVQEFK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr232" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65719-1.428.428", "start_pos": 428, "end_pos": 428, "uniprot_canonical_ac": "O65719-1", "length": 649, "uniprot_id": "HSP7C_ARATH", "protein_name": "Heat shock 70 kDa protein 3", "refseq_ac": "NP_001189847", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "HSP70-3", "gene_names_uniprotkb": "HSP70-3; F11F8; F3L24.33; HSC70-3; HSC70-G7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65719", "url": "https://www.uniprot.org/uniprotkb/O65719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLETAGGVMTVLIQRNTTIP", "down_seq": "KKEQVFSTYSDNQPGVLIQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "site_lbl": "Thr428" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65719-1.517.517", "start_pos": 517, "end_pos": 517, "uniprot_canonical_ac": "O65719-1", "length": 649, "uniprot_id": "HSP7C_ARATH", "protein_name": "Heat shock 70 kDa protein 3", "refseq_ac": "NP_001189847", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "HSP70-3", "gene_names_uniprotkb": "HSP70-3; F11F8; F3L24.33; HSC70-3; HSC70-G7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65719", "url": "https://www.uniprot.org/uniprotkb/O65719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDKTTGQKNKITITNDKGRL", "down_seq": "KDEIEKMVQEAEKYKSEDEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser517" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "O65719-1.533.533", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65719-1.533.533", "start_pos": 533, "end_pos": 533, "uniprot_canonical_ac": "O65719-1", "length": 649, "uniprot_id": "HSP7C_ARATH", "protein_name": "Heat shock 70 kDa protein 3", "refseq_ac": "NP_001189847", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "HSP70-3", "gene_names_uniprotkb": "HSP70-3; F11F8; F3L24.33; HSC70-3; HSC70-G7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65719", "url": "https://www.uniprot.org/uniprotkb/O65719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGRLSKDEIEKMVQEAEKYK", "down_seq": "EDEEHKKKVDAKNALENYAY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser533" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O65719-1.517.517", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65719-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "O65719-1", "length": 649, "uniprot_id": "HSP7C_ARATH", "protein_name": "Heat shock 70 kDa protein 3", "refseq_ac": "NP_001189847", "refseq_name": "Heat shock protein 70 (Hsp 70) family protein", "gene_name": "HSP70-3", "gene_names_uniprotkb": "HSP70-3; F11F8; F3L24.33; HSC70-3; HSC70-G7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65719", "url": "https://www.uniprot.org/uniprotkb/O65719" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "O65719", "url": "https://www.uniprot.org/uniprotkb/O65719" }, { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNPINTVFDAKRLIGRRFTD", "down_seq": "SVQSDIKLWPFTLKSGPAEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65719", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65719" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser84" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65782-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "O65782-1", "length": 499, "uniprot_id": "C83B1_ARATH", "protein_name": "Cytochrome P450 83B1", "refseq_ac": "NP_194878", "refseq_name": "cytochrome P450, family 83, subfamily B, polypeptide 1", "gene_name": "CYP83B1", "gene_names_uniprotkb": "CYP83B1; ATR4; F3L17.70; RED1; RNT1; RUNT1; SUR2", "gene_names_refseq": "''cytochrome P450; ALTERED TRYPTOPHAN REGULATION 4; ATR4; CYP83B1; CYTOCHROME P450 MONOOXYGENASE 83B1; F3L17.70; F3L17_70; RED ELONGATED 1; RED1; RNT1; RUNT 1; SUPERROOT 2; SUR2; cytochrome P450; family 83; polypeptide 1''; polypeptide 1; subfamily B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65782", "url": "https://www.uniprot.org/uniprotkb/O65782" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O65782", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65782" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "O65782", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65782", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAMKKAQDEVRSVIGDKGYV", "down_seq": "EEDIPNLPYLKAVIKESLRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65782", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65782" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser340" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "340", "end_pos": "340" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O78310-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "O78310-1", "length": 216, "uniprot_id": "SODC2_ARATH", "protein_name": "Superoxide dismutase [Cu-Zn] 2, chloroplastic", "refseq_ac": "NP_565666", "refseq_name": "copper/zinc superoxide dismutase 2", "gene_name": "CSD2", "gene_names_uniprotkb": "CSD2; F24D13.2; KD-SOD; SODCP", "gene_names_refseq": "AtSOD2; COPPER/ZINC SUPEROXIDE DISMUTASE 2; COPPER/ZINC SUPEROXIDE DISMUTASE; CSD2; CZSOD2; F24D13.2; F24D13_2; SOD2; copper/zinc superoxide dismutase 2; superoxide dismutase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O78310", "url": "https://www.uniprot.org/uniprotkb/O78310" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O78310", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O78310" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O78310", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O78310", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HRLQSVSFAVKAPSKALTVV", "down_seq": "AAKKAVAVLKGTSDVEGVVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O78310", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O78310" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser62" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "62", "end_pos": "62" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80339-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "O80339-1", "length": 225, "uniprot_id": "ERF82_ARATH", "protein_name": "Ethylene-responsive transcription factor 3", "refseq_ac": "NP_175479", "refseq_name": "ethylene responsive element binding factor 3", "gene_name": "ERF3", "gene_names_uniprotkb": "ERF3; ERF-3; ERF082; F11F12.4; F17J6.16", "gene_names_refseq": "ATERF-3; ATERF3; ERF3; F11F12.4; F11F12_4; ethylene responsive element binding factor 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80339", "url": "https://www.uniprot.org/uniprotkb/O80339" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MRRGRGSSAVAGP", "down_seq": "VVAAINGSVKEIRFRGVRKR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr14", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80345-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DKYLSEEPLPVPVSELYVPP", "down_seq": "MSGPDEDSPRKWNDYREMDS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr435", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr435" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "O80345-1.443.443", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.470.470", "start_pos": 470, "end_pos": 470, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YREMDSDSDFDGFGPMNVKP", "down_seq": "SSGFTIEFP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr470", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80345-1.290.290", "start_pos": 290, "end_pos": 290, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Diverse phosphoregulatory mechanisms controlling cyclin-dependent kinase-activating kinases in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2006-09", "authors": "Shimotohno Akie, Ohno Ryoko, Bisova Katerina, Sakaguchi Norihiro, Huang Jirong, Koncz Csaba, Uchimiya Hirofumi, Umeda Masaaki", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "16856985", "url": "https://glygen.org/publication/PubMed/16856985" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16856985", "url": "https://glygen.org/publication/PubMed/16856985", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GRNSFSYDADEAVDDTQGLM", "down_seq": "SCVGTRWFRPPELLYGSTMY", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes CDKA-1 activation and kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "PubMed", "id": "16856985", "url": "https://glygen.org/publication/PubMed/16856985" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "PubMed", "id": "16856985", "url": "https://glygen.org/publication/PubMed/16856985" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr290" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80345-1.291.291", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparison of Cak1p-like cyclin-dependent kinase-activating kinases.", "journal": "The Journal of biological chemistry", "date": "2002-09-06", "authors": "Tsakraklides Vasiliki, Solomon Mark J", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "reference": [ { "type": "PubMed", "id": "12084729", "url": "https://glygen.org/publication/PubMed/12084729" } ] } ], "crossref": [ { "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12084729", "url": "https://glygen.org/publication/PubMed/12084729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "GAYADVYRARRLSDGLIVAL", "down_seq": "EIFDYQSAFREIDALTILNG", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "No effect on CDKA-1 activation.", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "PubMed", "id": "12084729", "url": "https://glygen.org/publication/PubMed/12084729" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80345-1.32.32", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.179.179", "start_pos": 179, "end_pos": 179, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLKLADFGQARILMEHDIVA", "down_seq": "DENQQAYKLEDKDGETSEPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser179" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "O80345-1.196.196", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVASDENQQAYKLEDKDGET", "down_seq": "EPPEVIPDYENSPRQGSDGQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser196" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O80345-1.179.179", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O80345-1.205.205", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O80345-1.208.208", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.205.205", "start_pos": 205, "end_pos": 205, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AYKLEDKDGETSEPPEVIPD", "down_seq": "ENSPRQGSDGQEREAMSKDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr205" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O80345-1.196.196", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80345-1.208.208", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEDKDGETSEPPEVIPDYEN", "down_seq": "PRQGSDGQEREAMSKDEYFR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser208" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O80345-1.196.196", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80345-1.205.205", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.247.247", "start_pos": 247, "end_pos": 247, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FRQVEELKAKQVVRDDTDKD", "down_seq": "NVHDGDISCLATCTVSEMDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "site_lbl": "Ser247" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNSFSYDADEAVDDTQGLMT", "down_seq": "CVGTRWFRPPELLYGSTMYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser291" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80345-1.290.290", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80345-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HTRPEIIAKYEIFERVGSGA", "down_seq": "ADVYRARRLSDGLIVALKEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "site_lbl": "Tyr32" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "O80345-1.50.50", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80345-1.443.443", "start_pos": 443, "end_pos": 443, "uniprot_canonical_ac": "O80345-1", "length": 479, "uniprot_id": "CDKF1_ARATH", "protein_name": "Cyclin-dependent kinase F-1", "refseq_ac": "", "refseq_name": "", "gene_name": "CDKF-1", "gene_names_uniprotkb": "CDKF-1; CAK1; F19B15.10", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80345", "url": "https://www.uniprot.org/uniprotkb/O80345" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPVPVSELYVPPTMSGPDED", "down_seq": "PRKWNDYREMDSDSDFDGFG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80345", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80345" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser443" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" }, { "start_pos": "470", "end_pos": "470" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "290", "end_pos": "290" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "247", "end_pos": "247" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O80345-1.435.435", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80397-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "O80397-1", "length": 366, "uniprot_id": "M2K4_ARATH", "protein_name": "Mitogen-activated protein kinase kinase 4", "refseq_ac": "NP_175577", "refseq_name": "mitogen-activated protein kinase kinase 4", "gene_name": "MKK4", "gene_names_uniprotkb": "MKK4; F19C24.26", "gene_names_refseq": "ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4; ATMEK4; ATMKK4; F19C24.26; F19C24_26; MAP KINASE KINASE 4; MKK4; mitogen-activated protein kinase kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Cell death mediated by MAPK is associated with hydrogen peroxide production in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2002-01-04", "authors": "Ren Dongtao, Yang Heping, Zhang Shuqun", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "reference": [ { "type": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" } ] }, { "title": "MAP kinase signalling cascade in Arabidopsis innate immunity.", "journal": "Nature", "date": "2002-02-28", "authors": "Asai Tsuneaki, Tena Guillaume, Plotnikova Joulia, Willmann Matthew R, Chiu Wan-Ling, Gomez-Gomez Lourdes, Boller Thomas, Ausubel Frederick M, Sheen Jen", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" } ], "reference": [ { "type": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" } ] }, { "title": "The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.", "journal": "The EMBO journal", "date": "2016-11-15", "authors": "Yamada Kenta, Yamaguchi Koji, Shirakawa Tomomi, Nakagami Hirofumi, Mine Akira, Ishikawa Kazuya, Fujiwara Masayuki, Narusaka Mari, Narusaka Yoshihiro, Ichimura Kazuya, Kobayashi Yuka, Matsui Hidenori, Nomura Yuko, Nomoto Mika, Tada Yasuomi, Fukao Yoichiro, Fukamizo Tamo, Tsuda Kenichi, Shirasu Ken, Shibuya Naoto, Kawasaki Tsutomu", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "reference": [ { "type": "PubMed", "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653" } ] } ], "crossref": [ { "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "GAGGTVYKVIHRPSSRLYAL", "down_seq": "VIYGNHEETVRRQICREIEI", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "M", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" }, { "database": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" } ] }, { "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of activity. Phosphorylated by MAPKKK5.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653" }, { "database": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" }, { "database": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80397-1.224.224", "start_pos": 224, "end_pos": 224, "uniprot_canonical_ac": "O80397-1", "length": 366, "uniprot_id": "M2K4_ARATH", "protein_name": "Mitogen-activated protein kinase kinase 4", "refseq_ac": "NP_175577", "refseq_name": "mitogen-activated protein kinase kinase 4", "gene_name": "MKK4", "gene_names_uniprotkb": "MKK4; F19C24.26", "gene_names_refseq": "ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4; ATMEK4; ATMKK4; F19C24.26; F19C24_26; MAP KINASE KINASE 4; MKK4; mitogen-activated protein kinase kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.", "journal": "The EMBO journal", "date": "2016-11-15", "authors": "Yamada Kenta, Yamaguchi Koji, Shirakawa Tomomi, Nakagami Hirofumi, Mine Akira, Ishikawa Kazuya, Fujiwara Masayuki, Narusaka Mari, Narusaka Yoshihiro, Ichimura Kazuya, Kobayashi Yuka, Matsui Hidenori, Nomura Yuko, Nomoto Mika, Tada Yasuomi, Fukao Yoichiro, Fukamizo Tamo, Tsuda Kenichi, Shirasu Ken, Shibuya Naoto, Kawasaki Tsutomu", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "reference": [ { "type": "PubMed", "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653" } ] }, { "title": "Cell death mediated by MAPK is associated with hydrogen peroxide production in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2002-01-04", "authors": "Ren Dongtao, Yang Heping, Zhang Shuqun", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "reference": [ { "type": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" } ] }, { "title": "MAP kinase signalling cascade in Arabidopsis innate immunity.", "journal": "Nature", "date": "2002-02-28", "authors": "Asai Tsuneaki, Tena Guillaume, Plotnikova Joulia, Willmann Matthew R, Chiu Wan-Ling, Gomez-Gomez Lourdes, Boller Thomas, Ausubel Frederick M, Sheen Jen", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" } ], "reference": [ { "type": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" } ] } ], "crossref": [ { "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "INSAKNVKIADFGVSRILAQ", "down_seq": "MDPCNSSVGTIAYMSPERIN", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Impaired phosphorylation by MAPKKK5; when associated with A-230.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Constitutively active; when associated with D-230 or E-230.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" }, { "database": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" } ], "site_lbl": "Thr224" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O80397-1.230.230", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O80397-1.234.234", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80397-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "O80397-1", "length": 366, "uniprot_id": "M2K4_ARATH", "protein_name": "Mitogen-activated protein kinase kinase 4", "refseq_ac": "NP_175577", "refseq_name": "mitogen-activated protein kinase kinase 4", "gene_name": "MKK4", "gene_names_uniprotkb": "MKK4; F19C24.26", "gene_names_refseq": "ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4; ATMEK4; ATMKK4; F19C24.26; F19C24_26; MAP KINASE KINASE 4; MKK4; mitogen-activated protein kinase kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Cell death mediated by MAPK is associated with hydrogen peroxide production in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2002-01-04", "authors": "Ren Dongtao, Yang Heping, Zhang Shuqun", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "reference": [ { "type": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" } ] }, { "title": "The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.", "journal": "The EMBO journal", "date": "2016-11-15", "authors": "Yamada Kenta, Yamaguchi Koji, Shirakawa Tomomi, Nakagami Hirofumi, Mine Akira, Ishikawa Kazuya, Fujiwara Masayuki, Narusaka Mari, Narusaka Yoshihiro, Ichimura Kazuya, Kobayashi Yuka, Matsui Hidenori, Nomura Yuko, Nomoto Mika, Tada Yasuomi, Fukao Yoichiro, Fukamizo Tamo, Tsuda Kenichi, Shirasu Ken, Shibuya Naoto, Kawasaki Tsutomu", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "reference": [ { "type": "PubMed", "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653" } ] }, { "title": "MAP kinase signalling cascade in Arabidopsis innate immunity.", "journal": "Nature", "date": "2002-02-28", "authors": "Asai Tsuneaki, Tena Guillaume, Plotnikova Joulia, Willmann Matthew R, Chiu Wan-Ling, Gomez-Gomez Lourdes, Boller Thomas, Ausubel Frederick M, Sheen Jen", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" } ], "reference": [ { "type": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" } ] }, { "title": "Brassinosteroid-regulated GSK3/Shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-03-15", "authors": "Khan Mamoona, Rozhon Wilfried, Bigeard Jean, Pflieger Delphine, Husar Sigrid, Pitzschke Andrea, Teige Markus, Jonak Claudia, Hirt Heribert, Poppenberger Brigitte", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" } ], "reference": [ { "type": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] } ], "crossref": [ { "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKIADFGVSRILAQTMDPCN", "down_seq": "SVGTIAYMSPERINTDLNQG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by ASK7/BIN2. Impaired phosphorylation by MAPKKK5; when associated with A-224.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" }, { "database": "PubMed", "id": "27679653", "url": "https://glygen.org/publication/PubMed/27679653" }, { "database": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Constitutively active; when associated with D-224.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" }, { "database": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] }, { "sequence_org": "S", "sequence_mut": "E", "comment": "Constitutively active; when associated with D-224.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "11687590", "url": "https://glygen.org/publication/PubMed/11687590" }, { "database": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "11875555", "url": "https://glygen.org/publication/PubMed/11875555" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" } ], "site_lbl": "Ser230" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O80397-1.224.224", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80397-1.234.234", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80397-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "O80397-1", "length": 366, "uniprot_id": "M2K4_ARATH", "protein_name": "Mitogen-activated protein kinase kinase 4", "refseq_ac": "NP_175577", "refseq_name": "mitogen-activated protein kinase kinase 4", "gene_name": "MKK4", "gene_names_uniprotkb": "MKK4; F19C24.26", "gene_names_refseq": "ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4; ATMEK4; ATMKK4; F19C24.26; F19C24_26; MAP KINASE KINASE 4; MKK4; mitogen-activated protein kinase kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-regulated GSK3/Shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-03-15", "authors": "Khan Mamoona, Rozhon Wilfried, Bigeard Jean, Pflieger Delphine, Husar Sigrid, Pitzschke Andrea, Teige Markus, Jonak Claudia, Hirt Heribert, Poppenberger Brigitte", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" } ], "reference": [ { "type": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] } ], "crossref": [ { "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DFGVSRILAQTMDPCNSSVG", "down_seq": "IAYMSPERINTDLNQGKYDG", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes phosphorylation by ASK7/BIN2.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Abolishes activity of MKK4 against MPK6.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Abolishes activity of MKK4 against MPK6.", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ], "site_lbl": "Thr234" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O80397-1.224.224", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80397-1.230.230", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80397-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "O80397-1", "length": 366, "uniprot_id": "M2K4_ARATH", "protein_name": "Mitogen-activated protein kinase kinase 4", "refseq_ac": "NP_175577", "refseq_name": "mitogen-activated protein kinase kinase 4", "gene_name": "MKK4", "gene_names_uniprotkb": "MKK4; F19C24.26", "gene_names_refseq": "ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4; ATMEK4; ATMKK4; F19C24.26; F19C24_26; MAP KINASE KINASE 4; MKK4; mitogen-activated protein kinase kinase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-regulated GSK3/Shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana.", "journal": "The Journal of biological chemistry", "date": "2013-03-15", "authors": "Khan Mamoona, Rozhon Wilfried, Bigeard Jean, Pflieger Delphine, Husar Sigrid, Pitzschke Andrea, Teige Markus, Jonak Claudia, Hirt Heribert, Poppenberger Brigitte", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" } ], "reference": [ { "type": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ] } ], "crossref": [ { "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRPIQ", "down_seq": "PPGVSVPVKSRPRRRPDLTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ASK7", "evidence": [ { "database": "UniProtKB", "id": "O80397", "url": "https://www.uniprot.org/uniprotkb/O80397" }, { "database": "iPTMnet", "id": "O80397", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80397" }, { "database": "PubMed", "id": "23341468", "url": "https://glygen.org/publication/PubMed/23341468" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "224", "end_pos": "224" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80434-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ADGPAYITQCPIQPGQVYTY", "down_seq": "YTLTGQRGTLWWHAHILWLR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn114", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WWKSDTENIINEALKSGLAP", "down_seq": "VSDSHMINGHPGPVRNCPSQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn187", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SAGKYLVTASPFMDAPIAVD", "down_seq": "VTATATVHYSGTLSSSPTIL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.323.323", "start_pos": 323, "end_pos": 323, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VHYSGTLSSSPTILTLPPPQ", "down_seq": "ATSIANNFTNSLRSLNSKKY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn323", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O80434-1.330.330", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSSPTILTLPPPQNATSIAN", "down_seq": "FTNSLRSLNSKKYPALVPTT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn330", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O80434-1.323.323", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.373.373", "start_pos": 373, "end_pos": 373, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HHLFFTVGLGLNACPTCKAG", "down_seq": "GSRVVASINNVTFIMPKTAL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn373", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "O80434-1.383.383", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VFPAPSESMVRHYKFNVVMK", "down_seq": "VTRLCSSKPTVTVNGRYPGP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn37", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.383.383", "start_pos": 383, "end_pos": 383, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LNACPTCKAGNGSRVVASIN", "down_seq": "VTFIMPKTALLPAHYFNTSG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn383", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O80434-1.373.373", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O80434-1.400.400", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.400.400", "start_pos": 400, "end_pos": 400, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SINNVTFIMPKTALLPAHYF", "down_seq": "TSGVFTTDFPKNPPHVFNYS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn400", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O80434-1.383.383", "categories": [ "glycosylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80434-1.418.418", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.418.418", "start_pos": 418, "end_pos": 418, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YFNTSGVFTTDFPKNPPHVF", "down_seq": "YSGGSVTNMATETGTRLYKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn418", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80434-1.400.400", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.441.441", "start_pos": 441, "end_pos": 441, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GGSVTNMATETGTRLYKLPY", "down_seq": "ATVQLVLQDTGVIAPENHPV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn441", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.479.479", "start_pos": 479, "end_pos": 479, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HPVHLHGFNFFEVGRGLGNF", "down_seq": "STKDPKNFNLVDPVERNTIG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn479", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.545.545", "start_pos": 545, "end_pos": 545, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EVHTTWGLKMAFLVENGKGP", "down_seq": "QSILPPPKDLPKC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn545", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80434-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "O80434-1", "length": 558, "uniprot_id": "LAC4_ARATH", "protein_name": "Laccase-4", "refseq_ac": "NP_565881", "refseq_name": "Laccase/Diphenol oxidase family protein", "gene_name": "IRX12", "gene_names_uniprotkb": "IRX12; F16M14.1; LAC4", "gene_names_refseq": "ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; ATLMCO4; F16M14.1; F16M14_1; IRREGULAR XYLEM 12; IRX12; LAC4; LACCASE 4; LACCASE-LIKE MULTICOPPER OXIDASE 4; LMCO4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80434", "url": "https://www.uniprot.org/uniprotkb/O80434", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TIYAREDDTLLIKVVNHVKY", "down_seq": "VSIHWHGVRQVRTGWADGPA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn78", "evidence": [ { "id": "O80434", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80434#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80448-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "O80448-1", "length": 309, "uniprot_id": "PDX11_ARATH", "protein_name": "Pyridoxal 5'-phosphate synthase subunit PDX1.1", "refseq_ac": "", "refseq_name": "", "gene_name": "PDX11", "gene_names_uniprotkb": "PDX11; F16M14.16; PDX1L1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80448", "url": "https://www.uniprot.org/uniprotkb/O80448" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGTGVVAVYGEGAMTETKQK", "down_seq": "PFSVKVGLAQMLRGGVIMDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80448-1.4.4", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80448-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "O80448-1", "length": 309, "uniprot_id": "PDX11_ARATH", "protein_name": "Pyridoxal 5'-phosphate synthase subunit PDX1.1", "refseq_ac": "", "refseq_name": "", "gene_name": "PDX11", "gene_names_uniprotkb": "PDX11; F16M14.16; PDX1L1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80448", "url": "https://www.uniprot.org/uniprotkb/O80448" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGVFKSGDPVKRAKAIVQAV", "down_seq": "NYRDAAVLAEVSCGLGEAMV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448" } ], "site_lbl": "Thr273" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O80448-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80448-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "O80448-1", "length": 309, "uniprot_id": "PDX11_ARATH", "protein_name": "Pyridoxal 5'-phosphate synthase subunit PDX1.1", "refseq_ac": "", "refseq_name": "", "gene_name": "PDX11", "gene_names_uniprotkb": "PDX11; F16M14.16; PDX1L1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80448", "url": "https://www.uniprot.org/uniprotkb/O80448" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VFKSGDPVKRAKAIVQAVTN", "down_seq": "RDAAVLAEVSCGLGEAMVGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448" } ], "site_lbl": "Tyr275" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80448-1.273.273", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80448-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "O80448-1", "length": 309, "uniprot_id": "PDX11_ARATH", "protein_name": "Pyridoxal 5'-phosphate synthase subunit PDX1.1", "refseq_ac": "", "refseq_name": "", "gene_name": "PDX11", "gene_names_uniprotkb": "PDX11; F16M14.16; PDX1L1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80448", "url": "https://www.uniprot.org/uniprotkb/O80448" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAG", "down_seq": "GVVAVYGEGAMTETKQKSPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80448", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80448" } ], "site_lbl": "Thr4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "O80448-1.22.22", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80452-1.598.598", "start_pos": 598, "end_pos": 598, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "EMBRYONIC FACTOR 1 encodes an AMP deaminase and is essential for the zygote to embryo transition in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-06", "authors": "Xu Jun, Zhang Hai-Ying, Xie Cong-Hua, Xue Hong-Wei, Dijkhuis Paul, Liu Chun-Ming", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "reference": [ { "type": "PubMed", "id": "15918887", "url": "https://glygen.org/publication/PubMed/15918887" } ] } ], "crossref": [ { "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15918887", "url": "https://glygen.org/publication/PubMed/15918887", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "TVDPDSHPQLHVFLKQVVGF", "down_seq": "LVDDESKPERRPTKHMPTPA", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "In fac1-1; zygote-lethal phenotype.", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "PubMed", "id": "15918887", "url": "https://glygen.org/publication/PubMed/15918887" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.115.115", "start_pos": 115, "end_pos": 115, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GRSNGHVYVDEIPPGLPRLH", "down_seq": "PSEGRASVHGASSIRKTGSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr115" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O80452-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O80452-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O80452-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O80452-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O80452-1.134.134", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.122.122", "start_pos": 122, "end_pos": 122, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YVDEIPPGLPRLHTPSEGRA", "down_seq": "VHGASSIRKTGSFVRPISPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser122" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O80452-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80452-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80452-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O80452-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O80452-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80452-1.140.140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPGLPRLHTPSEGRASVHGA", "down_seq": "SIRKTGSFVRPISPKSPVAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser127" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O80452-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80452-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80452-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80452-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O80452-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O80452-1.140.140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGLPRLHTPSEGRASVHGAS", "down_seq": "IRKTGSFVRPISPKSPVASA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser128" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O80452-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80452-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80452-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80452-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80452-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O80452-1.140.140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RLHTPSEGRASVHGASSIRK", "down_seq": "GSFVRPISPKSPVASASAFE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr132" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O80452-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O80452-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80452-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80452-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80452-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80452-1.140.140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HTPSEGRASVHGASSIRKTG", "down_seq": "FVRPISPKSPVASASAFESV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser134" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O80452-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O80452-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O80452-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80452-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80452-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80452-1.140.140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.140.140", "start_pos": 140, "end_pos": 140, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RASVHGASSIRKTGSFVRPI", "down_seq": "PKSPVASASAFESVEESDDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser140" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80452-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O80452-1.127.127", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O80452-1.128.128", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80452-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80452-1.134.134", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.201.201", "start_pos": 201, "end_pos": 201, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EMPADANEEQISMAASSMIR", "down_seq": "HSVSGDLHGVQPDPIAADIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser201" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O80452-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80452-1.205.205", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.", "journal": "Proteomics", "date": "2009-09", "authors": "Ito Jun, Taylor Nicolas L, Castleden Ian, Weckwerth Wolfram, Millar A Harvey, Heazlewood Joshua L", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PADANEEQISMAASSMIRSH", "down_seq": "VSGDLHGVQPDPIAADILRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser203" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80452-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80452-1.205.205", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.205.205", "start_pos": 205, "end_pos": 205, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DANEEQISMAASSMIRSHSV", "down_seq": "GDLHGVQPDPIAADILRKEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser205" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80452-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80452-1.203.203", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.276.276", "start_pos": 276, "end_pos": 276, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELRKRYVFQETVAPWEKEVI", "down_seq": "DPSTPKPNTEPFAHYPQGKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser276" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O80452-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80452-1.280.280", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O80452-1.285.285", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" }, { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRYVFQETVAPWEKEVISDP", "down_seq": "TPKPNTEPFAHYPQGKSDHC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser279" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80452-1.276.276", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80452-1.280.280", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80452-1.285.285", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.280.280", "start_pos": 280, "end_pos": 280, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RYVFQETVAPWEKEVISDPS", "down_seq": "PKPNTEPFAHYPQGKSDHCF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr280" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80452-1.276.276", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80452-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80452-1.285.285", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.285.285", "start_pos": 285, "end_pos": 285, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ETVAPWEKEVISDPSTPKPN", "down_seq": "EPFAHYPQGKSDHCFEMQDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr285" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O80452-1.276.276", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80452-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80452-1.280.280", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PQNPTLVRRRSQVRRKVNDQ", "down_seq": "GRSPASLPDATPFTDGGGGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr70" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O80452-1.73.73", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80452-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTLVRRRSQVRRKVNDQYGR", "down_seq": "PASLPDATPFTDGGGGGGGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser73" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80452-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80452-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80452-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "O80452-1", "length": 839, "uniprot_id": "AMPD_ARATH", "protein_name": "AMP deaminase", "refseq_ac": "NP_565886", "refseq_name": "AMP deaminase, putative / myoadenylate deaminase", "gene_name": "AMPD", "gene_names_uniprotkb": "AMPD; F16M14.21; FAC1", "gene_names_refseq": "ADENOSINE 5'-MONOPHOSPHATE DEAMINASE; ATAMPD; EMBRYONIC FACTOR1; F16M14.21; F16M14_21; FAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80452", "url": "https://www.uniprot.org/uniprotkb/O80452" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRRRSQVRRKVNDQYGRSPA", "down_seq": "LPDATPFTDGGGGGGGDTGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80452", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80452" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser76" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "598", "end_pos": "598" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "115", "end_pos": "115" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "128", "end_pos": "128" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O80452-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80452-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80462-1.497.497", "start_pos": 497, "end_pos": 497, "uniprot_canonical_ac": "O80462-1", "length": 888, "uniprot_id": "XLG1_ARATH", "protein_name": "Extra-large guanine nucleotide-binding protein 1", "refseq_ac": "NP_565553", "refseq_name": "extra-large G-protein 1", "gene_name": "XLG1", "gene_names_uniprotkb": "XLG1; F26B6.11; XLG", "gene_names_refseq": "ATXLG1; F26B6.11; F26B6_11; XLG1; extra-large G-protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80462", "url": "https://www.uniprot.org/uniprotkb/O80462" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ca2+-dependent GTPase, extra-large G protein 2 (XLG2), promotes activation of DNA-binding protein related to vernalization 1 (RTV1), leading to activation of floral integrator genes and early flowering in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2012-03-09", "authors": "Heo Jae Bok, Sung Sibum, Assmann Sarah M", "evidence": [ { "database": "UniProtKB", "id": "O80462", "url": "https://www.uniprot.org/uniprotkb/O80462" } ], "reference": [ { "type": "PubMed", "id": "22232549", "url": "https://glygen.org/publication/PubMed/22232549" } ] } ], "crossref": [ { "id": "O80462", "url": "https://www.uniprot.org/uniprotkb/O80462", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22232549", "url": "https://glygen.org/publication/PubMed/22232549", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HLEHRTLQKILLVGNSGSGT", "down_seq": "TIFKQAKILYKDVPFLEDER", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "N", "comment": "Strongly reduces GTP-binding and GTPase activity.", "evidence": [ { "database": "UniProtKB", "id": "O80462", "url": "https://www.uniprot.org/uniprotkb/O80462" }, { "database": "PubMed", "id": "22232549", "url": "https://glygen.org/publication/PubMed/22232549" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "497", "end_pos": "497" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "876", "end_pos": "876" }, { "start_pos": "879", "end_pos": "879" }, { "start_pos": "887", "end_pos": "887" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80462-1.876.876", "start_pos": 876, "end_pos": 876, "uniprot_canonical_ac": "O80462-1", "length": 888, "uniprot_id": "XLG1_ARATH", "protein_name": "Extra-large guanine nucleotide-binding protein 1", "refseq_ac": "NP_565553", "refseq_name": "extra-large G-protein 1", "gene_name": "XLG1", "gene_names_uniprotkb": "XLG1; F26B6.11; XLG", "gene_names_refseq": "ATXLG1; F26B6.11; F26B6_11; XLG1; extra-large G-protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80462", "url": "https://www.uniprot.org/uniprotkb/O80462" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80462", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80462", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KLAMEILKWSEERTNICMSE", "down_seq": "SMYSTEPSSFSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80462", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80462" } ], "site_lbl": "Tyr876" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "497", "end_pos": "497" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "876", "end_pos": "876" }, { "start_pos": "879", "end_pos": "879" }, { "start_pos": "887", "end_pos": "887" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O80462-1.879.879", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O80462-1.887.887", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80462-1.879.879", "start_pos": 879, "end_pos": 879, "uniprot_canonical_ac": "O80462-1", "length": 888, "uniprot_id": "XLG1_ARATH", "protein_name": "Extra-large guanine nucleotide-binding protein 1", "refseq_ac": "NP_565553", "refseq_name": "extra-large G-protein 1", "gene_name": "XLG1", "gene_names_uniprotkb": "XLG1; F26B6.11; XLG", "gene_names_refseq": "ATXLG1; F26B6.11; F26B6_11; XLG1; extra-large G-protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80462", "url": "https://www.uniprot.org/uniprotkb/O80462" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80462", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80462", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MEILKWSEERTNICMSEYSM", "down_seq": "STEPSSFSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80462", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80462" } ], "site_lbl": "Tyr879" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "497", "end_pos": "497" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "876", "end_pos": "876" }, { "start_pos": "879", "end_pos": "879" }, { "start_pos": "887", "end_pos": "887" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80462-1.876.876", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80462-1.887.887", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80462-1.887.887", "start_pos": 887, "end_pos": 887, "uniprot_canonical_ac": "O80462-1", "length": 888, "uniprot_id": "XLG1_ARATH", "protein_name": "Extra-large guanine nucleotide-binding protein 1", "refseq_ac": "NP_565553", "refseq_name": "extra-large G-protein 1", "gene_name": "XLG1", "gene_names_uniprotkb": "XLG1; F26B6.11; XLG", "gene_names_refseq": "ATXLG1; F26B6.11; F26B6_11; XLG1; extra-large G-protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80462", "url": "https://www.uniprot.org/uniprotkb/O80462" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80462", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80462", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERTNICMSEYSMYSTEPSSF", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80462", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80462" } ], "site_lbl": "Ser887" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "497", "end_pos": "497" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "876", "end_pos": "876" }, { "start_pos": "879", "end_pos": "879" }, { "start_pos": "887", "end_pos": "887" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O80462-1.876.876", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80462-1.879.879", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80501-1.122.122", "start_pos": 122, "end_pos": 122, "uniprot_canonical_ac": "O80501-1", "length": 208, "uniprot_id": "RAH1B_ARATH", "protein_name": "Ras-related protein RABH1b", "refseq_ac": "NP_181989", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABH1B", "gene_names_uniprotkb": "RABH1B; F16B22.10; RAB6A", "gene_names_refseq": "ATRAB6A; ATRABH1B; F16B22.10; RAB6A; RAB6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "AtRAB-H1b and AtRAB-H1c GTPases, homologues of the yeast Ypt6, target reporter proteins to the Golgi when expressed in Nicotiana tabacum and Arabidopsis thaliana.", "journal": "Journal of experimental botany", "date": "2009", "authors": "Johansen Jorunn Nergaard, Chow Cheung-Ming, Moore Ian, Hawes Chris", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "reference": [ { "type": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] }, { "title": "A small GTP-binding protein from Arabidopsis thaliana functionally complements the yeast YPT6 null mutant.", "journal": "Plant physiology", "date": "1994-02", "authors": "Bednarek S Y, Reynolds T L, Schroeder M, Grabowski R, Hengst L, Gallwitz D, Raikhel N V", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "reference": [ { "type": "PubMed", "id": "8159788", "url": "https://glygen.org/publication/PubMed/8159788" } ] } ], "crossref": [ { "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595", "database": "PubMed", "categories": [ "Other" ] }, { "id": "8159788", "url": "https://glygen.org/publication/PubMed/8159788", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KWIDEVRTERGSDVIVVLVG", "down_seq": "KTDLVDKRQVSIEEAEAKAR", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "I", "comment": "Loss of GTP-binding activity and targeting to Golgi. Loss of GTP-binding activity; when associated with 206-C--C-208 Del.", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" }, { "database": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" }, { "database": "PubMed", "id": "8159788", "url": "https://glygen.org/publication/PubMed/8159788" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "206", "end_pos": "208" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "89", "end_pos": "89" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80501-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "O80501-1", "length": 208, "uniprot_id": "RAH1B_ARATH", "protein_name": "Ras-related protein RABH1b", "refseq_ac": "NP_181989", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABH1B", "gene_names_uniprotkb": "RABH1B; F16B22.10; RAB6A", "gene_names_refseq": "ATRAB6A; ATRABH1B; F16B22.10; RAB6A; RAB6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "AtRAB-H1b and AtRAB-H1c GTPases, homologues of the yeast Ypt6, target reporter proteins to the Golgi when expressed in Nicotiana tabacum and Arabidopsis thaliana.", "journal": "Journal of experimental botany", "date": "2009", "authors": "Johansen Jorunn Nergaard, Chow Cheung-Ming, Moore Ian, Hawes Chris", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "reference": [ { "type": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] } ], "crossref": [ { "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "DVNLKSSNANASLAQQQSGG", "down_seq": "SC", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of targeting to Golgi; when associated with S-208.", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" }, { "database": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "206", "end_pos": "208" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "89", "end_pos": "89" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "upstream", "id": "O80501-1.206.208", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80501-1.208.208", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80501-1.206.208", "start_pos": 206, "end_pos": 208, "uniprot_canonical_ac": "O80501-1", "length": 208, "uniprot_id": "RAH1B_ARATH", "protein_name": "Ras-related protein RABH1b", "refseq_ac": "NP_181989", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABH1B", "gene_names_uniprotkb": "RABH1B; F16B22.10; RAB6A", "gene_names_refseq": "ATRAB6A; ATRABH1B; F16B22.10; RAB6A; RAB6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A small GTP-binding protein from Arabidopsis thaliana functionally complements the yeast YPT6 null mutant.", "journal": "Plant physiology", "date": "1994-02", "authors": "Bednarek S Y, Reynolds T L, Schroeder M, Grabowski R, Hengst L, Gallwitz D, Raikhel N V", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "reference": [ { "type": "PubMed", "id": "8159788", "url": "https://glygen.org/publication/PubMed/8159788" } ] } ], "crossref": [ { "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8159788", "url": "https://glygen.org/publication/PubMed/8159788", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "CSC", "start_aa": "C", "up_seq": "DVNLKSSNANASLAQQQSGG", "down_seq": "", "mutagenesis": [ { "sequence_org": "CSC", "sequence_mut": "", "comment": "No effect on GTP-binding activity. Loss of GTP-binding activity; when associated with I-122.", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" }, { "database": "PubMed", "id": "8159788", "url": "https://glygen.org/publication/PubMed/8159788" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "206", "end_pos": "208" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "89", "end_pos": "89" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "downstream", "id": "O80501-1.206.206", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "upstream", "id": "O80501-1.208.208", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80501-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "O80501-1", "length": 208, "uniprot_id": "RAH1B_ARATH", "protein_name": "Ras-related protein RABH1b", "refseq_ac": "NP_181989", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABH1B", "gene_names_uniprotkb": "RABH1B; F16B22.10; RAB6A", "gene_names_refseq": "ATRAB6A; ATRABH1B; F16B22.10; RAB6A; RAB6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "AtRAB-H1b and AtRAB-H1c GTPases, homologues of the yeast Ypt6, target reporter proteins to the Golgi when expressed in Nicotiana tabacum and Arabidopsis thaliana.", "journal": "Journal of experimental botany", "date": "2009", "authors": "Johansen Jorunn Nergaard, Chow Cheung-Ming, Moore Ian, Hawes Chris", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "reference": [ { "type": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] } ], "crossref": [ { "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "NLKSSNANASLAQQQSGGCS", "down_seq": "", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of targeting to Golgi; when associated with S-206.", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" }, { "database": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "206", "end_pos": "208" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "89", "end_pos": "89" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80501-1.206.206", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "downstream", "id": "O80501-1.206.208", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80501-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "O80501-1", "length": 208, "uniprot_id": "RAH1B_ARATH", "protein_name": "Ras-related protein RABH1b", "refseq_ac": "NP_181989", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABH1B", "gene_names_uniprotkb": "RABH1B; F16B22.10; RAB6A", "gene_names_refseq": "ATRAB6A; ATRABH1B; F16B22.10; RAB6A; RAB6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "AtRAB-H1b and AtRAB-H1c GTPases, homologues of the yeast Ypt6, target reporter proteins to the Golgi when expressed in Nicotiana tabacum and Arabidopsis thaliana.", "journal": "Journal of experimental botany", "date": "2009", "authors": "Johansen Jorunn Nergaard, Chow Cheung-Ming, Moore Ian, Hawes Chris", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "reference": [ { "type": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] } ], "crossref": [ { "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PVSALAKYKLVFLGDQSVGK", "down_seq": "SIITRFMYDKFDNTYQATIG", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "N", "comment": "Loss of GTP-binding activity. No effect on targeting to Golgi.", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" }, { "database": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "206", "end_pos": "208" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "89", "end_pos": "89" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80501-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "O80501-1", "length": 208, "uniprot_id": "RAH1B_ARATH", "protein_name": "Ras-related protein RABH1b", "refseq_ac": "NP_181989", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABH1B", "gene_names_uniprotkb": "RABH1B; F16B22.10; RAB6A", "gene_names_refseq": "ATRAB6A; ATRABH1B; F16B22.10; RAB6A; RAB6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "AtRAB-H1b and AtRAB-H1c GTPases, homologues of the yeast Ypt6, target reporter proteins to the Golgi when expressed in Nicotiana tabacum and Arabidopsis thaliana.", "journal": "Journal of experimental botany", "date": "2009", "authors": "Johansen Jorunn Nergaard, Chow Cheung-Ming, Moore Ian, Hawes Chris", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "reference": [ { "type": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] } ], "crossref": [ { "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "SKTMYLEDRTVRLQLWDTAG", "down_seq": "ERFRSLIPSYIRDSSVAVIV", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "L", "comment": "No effect on GTP-binding activity and targeting to Golgi.", "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" }, { "database": "PubMed", "id": "19454595", "url": "https://glygen.org/publication/PubMed/19454595" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "206", "end_pos": "208" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "89", "end_pos": "89" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80501-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "O80501-1", "length": 208, "uniprot_id": "RAH1B_ARATH", "protein_name": "Ras-related protein RABH1b", "refseq_ac": "NP_181989", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABH1B", "gene_names_uniprotkb": "RABH1B; F16B22.10; RAB6A", "gene_names_refseq": "ATRAB6A; ATRABH1B; F16B22.10; RAB6A; RAB6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80501", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80501" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80501", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80501", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ERFRSLIPSYIRDSSVAVIV", "down_seq": "DVASRQSFLNTTKWIDEVRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80501", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80501" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr89" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "206", "end_pos": "208" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "89", "end_pos": "89" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O80501-1.93.93", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80501-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "O80501-1", "length": 208, "uniprot_id": "RAH1B_ARATH", "protein_name": "Ras-related protein RABH1b", "refseq_ac": "NP_181989", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "RABH1B", "gene_names_uniprotkb": "RABH1B; F16B22.10; RAB6A", "gene_names_refseq": "ATRAB6A; ATRABH1B; F16B22.10; RAB6A; RAB6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80501", "url": "https://www.uniprot.org/uniprotkb/O80501" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80501", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80501" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80501", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80501", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLIPSYIRDSSVAVIVYDVA", "down_seq": "RQSFLNTTKWIDEVRTERGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80501", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80501" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser93" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "206", "end_pos": "208" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "89", "end_pos": "89" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80501-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80528-1.310.310", "start_pos": 310, "end_pos": 310, "uniprot_canonical_ac": "O80528-1", "length": 599, "uniprot_id": "HASP_ARATH", "protein_name": "Serine/threonine-protein kinase haspin homolog", "refseq_ac": "NP_172416", "refseq_name": "Protein kinase superfamily protein", "gene_name": "HASPIN", "gene_names_uniprotkb": "HASPIN; F14J9.11", "gene_names_refseq": "AtHaspin; F14J9.11; F14J9_11; Haspin-related gene; Haspin", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80528", "url": "https://www.uniprot.org/uniprotkb/O80528" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and characterization of plant Haspin kinase as a histone H3 threonine kinase.", "journal": "BMC plant biology", "date": "2011-04-28", "authors": "Kurihara Daisuke, Matsunaga Sachihiro, Omura Tomohiro, Higashiyama Tetsuya, Fukui Kiichi", "evidence": [ { "database": "UniProtKB", "id": "O80528", "url": "https://www.uniprot.org/uniprotkb/O80528" } ], "reference": [ { "type": "PubMed", "id": "21527018", "url": "https://glygen.org/publication/PubMed/21527018" } ] }, { "title": "AtHaspin phosphorylates histone H3 at threonine 3 during mitosis and contributes to embryonic patterning in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2011-11", "authors": "Ashtiyani Raheleh Karimi, Moghaddam Ali Mohammad Banaei, Schubert Veit, Rutten Twan, Fuchs J\u00f6rg, Demidov Dmitri, Blattner Frank R, Houben Andreas", "evidence": [ { "database": "UniProtKB", "id": "O80528", "url": "https://www.uniprot.org/uniprotkb/O80528" } ], "reference": [ { "type": "PubMed", "id": "21749502", "url": "https://glygen.org/publication/PubMed/21749502" } ] } ], "crossref": [ { "id": "O80528", "url": "https://www.uniprot.org/uniprotkb/O80528", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21527018", "url": "https://glygen.org/publication/PubMed/21527018", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21749502", "url": "https://glygen.org/publication/PubMed/21749502", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "IVKIGEGTYGEAFRAGSSVC", "down_seq": "IVPIDGDFRVNGEVQKRADE", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O80528", "url": "https://www.uniprot.org/uniprotkb/O80528" }, { "database": "PubMed", "id": "21527018", "url": "https://glygen.org/publication/PubMed/21527018" }, { "database": "PubMed", "id": "21749502", "url": "https://glygen.org/publication/PubMed/21749502" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "310", "end_pos": "310" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80528-1.508.508", "start_pos": 508, "end_pos": 508, "uniprot_canonical_ac": "O80528-1", "length": 599, "uniprot_id": "HASP_ARATH", "protein_name": "Serine/threonine-protein kinase haspin homolog", "refseq_ac": "NP_172416", "refseq_name": "Protein kinase superfamily protein", "gene_name": "HASPIN", "gene_names_uniprotkb": "HASPIN; F14J9.11", "gene_names_refseq": "AtHaspin; F14J9.11; F14J9_11; Haspin-related gene; Haspin", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80528", "url": "https://www.uniprot.org/uniprotkb/O80528" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80528", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80528" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80528", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80528" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80528", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80528" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O80528", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80528", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TLSRINTGEKILFLDLTSDP", "down_seq": "LFKGPKGDKQSETYRKMKAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80528", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80528" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Tyr508" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "310", "end_pos": "310" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "508", "end_pos": "508" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80536-1.482.482", "start_pos": 482, "end_pos": 482, "uniprot_canonical_ac": "O80536-1", "length": 524, "uniprot_id": "PIF3_ARATH", "protein_name": "Transcription factor PIF3", "refseq_ac": "NP_001318964", "refseq_name": "phytochrome interacting factor 3", "gene_name": "PIF3", "gene_names_uniprotkb": "PIF3; BHLH8; EN100; F14J9.19; PAP3", "gene_names_refseq": "F14J9.19; F14J9_19; PAP3; PHOTOCURRENT 1; PHYTOCHROME INTERACTING FACTOR 3; PHYTOCHROME-ASSOCIATED PROTEIN 3; PIF3; POC1; phytochrome interacting factor 3; purple acid phosphatase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80536", "url": "https://www.uniprot.org/uniprotkb/O80536" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O80536", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80536" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O80536", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80536", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQPVAMGIPRVSGGGIFAGS", "down_seq": "TIGNGSTRDLSGSKDQTTTN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80536", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80536" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser482" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80548-1.357.357", "start_pos": 357, "end_pos": 357, "uniprot_canonical_ac": "O80548-1", "length": 693, "uniprot_id": "MRF2_ARATH", "protein_name": "MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 2", "refseq_ac": "NP_173687", "refseq_name": "MA3 domain-containing protein", "gene_name": "MRF2", "gene_names_uniprotkb": "MRF2; MAT8; T22J18.10", "gene_names_refseq": "T22J18.10; T22J18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80548", "url": "https://www.uniprot.org/uniprotkb/O80548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80548", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80548", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SIEDLSLDIPDARRILQSFI", "down_seq": "KAASEGWLCASSLKSLSADA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80548", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80548" } ], "site_lbl": "Ser357" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "357", "end_pos": "357" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80562-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "O80562-1", "length": 227, "uniprot_id": "HOL2_ARATH", "protein_name": "Probable thiol methyltransferase 1", "refseq_ac": "NP_001118521", "refseq_name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "gene_name": "HOL2", "gene_names_uniprotkb": "HOL2; F6E13.5", "gene_names_refseq": "ATHOL2; F6E13.5; HARMLESS TO OZONE LAYER 2; HOL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80562", "url": "https://www.uniprot.org/uniprotkb/O80562" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAEEQQNSSYSIGGNILP", "down_seq": "PEEAATFQPQVVAEGGWDKC", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr19", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80562-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "O80562-1", "length": 227, "uniprot_id": "HOL2_ARATH", "protein_name": "Probable thiol methyltransferase 1", "refseq_ac": "NP_001118521", "refseq_name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "gene_name": "HOL2", "gene_names_uniprotkb": "HOL2; F6E13.5", "gene_names_refseq": "ATHOL2; F6E13.5; HARMLESS TO OZONE LAYER 2; HOL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80562", "url": "https://www.uniprot.org/uniprotkb/O80562" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PERFVVGLDISDKALNKANE", "down_seq": "YGSSPKAEYFSFVKEDVFTW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr107" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80562-1.108.108", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80562-1.110.110", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80562-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "O80562-1", "length": 227, "uniprot_id": "HOL2_ARATH", "protein_name": "Probable thiol methyltransferase 1", "refseq_ac": "NP_001118521", "refseq_name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "gene_name": "HOL2", "gene_names_uniprotkb": "HOL2; F6E13.5", "gene_names_refseq": "ATHOL2; F6E13.5; HARMLESS TO OZONE LAYER 2; HOL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80562", "url": "https://www.uniprot.org/uniprotkb/O80562" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ERFVVGLDISDKALNKANET", "down_seq": "GSSPKAEYFSFVKEDVFTWR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr108" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80562-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80562-1.110.110", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80562-1.110.110", "start_pos": 110, "end_pos": 110, "uniprot_canonical_ac": "O80562-1", "length": 227, "uniprot_id": "HOL2_ARATH", "protein_name": "Probable thiol methyltransferase 1", "refseq_ac": "NP_001118521", "refseq_name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "gene_name": "HOL2", "gene_names_uniprotkb": "HOL2; F6E13.5", "gene_names_refseq": "ATHOL2; F6E13.5; HARMLESS TO OZONE LAYER 2; HOL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80562", "url": "https://www.uniprot.org/uniprotkb/O80562" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FVVGLDISDKALNKANETYG", "down_seq": "SPKAEYFSFVKEDVFTWRPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80562" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser110" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80562-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80562-1.108.108", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80562-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "O80562-1", "length": 227, "uniprot_id": "HOL2_ARATH", "protein_name": "Probable thiol methyltransferase 1", "refseq_ac": "NP_001118521", "refseq_name": "S-adenosyl-L-methionine-dependent methyltransferases superfamily protein", "gene_name": "HOL2", "gene_names_uniprotkb": "HOL2; F6E13.5", "gene_names_refseq": "ATHOL2; F6E13.5; HARMLESS TO OZONE LAYER 2; HOL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80562", "url": "https://www.uniprot.org/uniprotkb/O80562" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80562", "url": "https://www.uniprot.org/uniprotkb/O80562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLGRTLVPGCGGGHDVVAMA", "down_seq": "PERFVVGLDISDKALNKANE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80562", "url": "https://www.uniprot.org/uniprotkb/O80562" } ], "site_lbl": "Ser86" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80565-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "O80565-1", "length": 343, "uniprot_id": "OEP37_ARATH", "protein_name": "Outer envelope pore protein 37, chloroplastic", "refseq_ac": "NP_566003", "refseq_name": "chloroplast outer envelope protein 37", "gene_name": "OEP37", "gene_names_uniprotkb": "OEP37; F6E13.8", "gene_names_refseq": "ARABIDOPSIS CHLOROPLAST OUTER ENVELOPE PROTEIN 37; ATOEP37; F6E13.8; OEP37; chloroplast outer envelope protein 37", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80565", "url": "https://www.uniprot.org/uniprotkb/O80565" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MADPSSQNPNLA", "down_seq": "PPPPSSPSPTHQIQSGTSEL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr13", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "13", "end_pos": "13" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80588-1.304.321", "start_pos": 304, "end_pos": 321, "uniprot_canonical_ac": "O80588-1", "length": 474, "uniprot_id": "EDE1_ARATH", "protein_name": "Protein ENDOSPERM DEFECTIVE 1", "refseq_ac": "NP_181947", "refseq_name": "ENDOSPERM DEFECTIVE protein (DUF566)", "gene_name": "EDE1", "gene_names_uniprotkb": "EDE1; EMB3116; F6E13.32; QWRF5", "gene_names_refseq": "EDE1; EMB3116; EMBRYO DEFECTIVE 3116; ENDOSPERM DEFECTIVE 1; F6E13.32; QWRF domain containing 5; QWRF5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ENDOSPERM DEFECTIVE1 Is a Novel Microtubule-Associated Protein Essential for Seed Development in Arabidopsis.", "journal": "The Plant cell", "date": "2009-01", "authors": "Pignocchi Cristina, Minns Gregory E, Nesi Nathalie, Koumproglou Rachil, Kitsios Georgios, Benning Christoph, Lloyd Clive W, Doonan John H, Hills Matthew J", "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "reference": [ { "type": "PubMed", "id": "19151224", "url": "https://glygen.org/publication/PubMed/19151224" } ] } ], "crossref": [ { "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19151224", "url": "https://glygen.org/publication/PubMed/19151224", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "RMFYSLGLKMSELSDSVQ", "start_aa": "R", "up_seq": "WRFANANAEVKTQSQKAQAE", "down_seq": "RKRIELQHLQRVKAVTEIVE", "mutagenesis": [ { "sequence_org": "RMFYSLGLKMSELSDSVQ", "sequence_mut": "", "comment": "In ede1-1; endosperm containing a few enlarged nuclei lacking associated microtubule structures.", "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" }, { "database": "PubMed", "id": "19151224", "url": "https://glygen.org/publication/PubMed/19151224" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "304", "end_pos": "321" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80588-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "O80588-1", "length": 474, "uniprot_id": "EDE1_ARATH", "protein_name": "Protein ENDOSPERM DEFECTIVE 1", "refseq_ac": "NP_181947", "refseq_name": "ENDOSPERM DEFECTIVE protein (DUF566)", "gene_name": "EDE1", "gene_names_uniprotkb": "EDE1; EMB3116; F6E13.32; QWRF5", "gene_names_refseq": "EDE1; EMB3116; EMBRYO DEFECTIVE 3116; ENDOSPERM DEFECTIVE 1; F6E13.32; QWRF domain containing 5; QWRF5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRRQLKMQEGDENRPSETAR", "down_seq": "LDSPFPLQQVDGGKNPKQHI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser104" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "304", "end_pos": "321" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80588-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "O80588-1", "length": 474, "uniprot_id": "EDE1_ARATH", "protein_name": "Protein ENDOSPERM DEFECTIVE 1", "refseq_ac": "NP_181947", "refseq_name": "ENDOSPERM DEFECTIVE protein (DUF566)", "gene_name": "EDE1", "gene_names_uniprotkb": "EDE1; EMB3116; F6E13.32; QWRF5", "gene_names_refseq": "EDE1; EMB3116; EMBRYO DEFECTIVE 3116; ENDOSPERM DEFECTIVE 1; F6E13.32; QWRF domain containing 5; QWRF5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEARIGRSMEHP", "down_seq": "TPAINAPAPVPPPSTRRPRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser13" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "304", "end_pos": "321" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O80588-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O80588-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O80588-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80588-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "O80588-1", "length": 474, "uniprot_id": "EDE1_ARATH", "protein_name": "Protein ENDOSPERM DEFECTIVE 1", "refseq_ac": "NP_181947", "refseq_name": "ENDOSPERM DEFECTIVE protein (DUF566)", "gene_name": "EDE1", "gene_names_uniprotkb": "EDE1; EMB3116; F6E13.32; QWRF5", "gene_names_refseq": "EDE1; EMB3116; EMBRYO DEFECTIVE 3116; ENDOSPERM DEFECTIVE 1; F6E13.32; QWRF domain containing 5; QWRF5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSMEHPSTPAINAPAPVPPP", "down_seq": "TRRPRVREVSSRFMSPISSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser27" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "304", "end_pos": "321" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O80588-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O80588-1.13.13", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80588-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80588-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "O80588-1", "length": 474, "uniprot_id": "EDE1_ARATH", "protein_name": "Protein ENDOSPERM DEFECTIVE 1", "refseq_ac": "NP_181947", "refseq_name": "ENDOSPERM DEFECTIVE protein (DUF566)", "gene_name": "EDE1", "gene_names_uniprotkb": "EDE1; EMB3116; F6E13.32; QWRF5", "gene_names_refseq": "EDE1; EMB3116; EMBRYO DEFECTIVE 3116; ENDOSPERM DEFECTIVE 1; F6E13.32; QWRF domain containing 5; QWRF5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SMEHPSTPAINAPAPVPPPS", "down_seq": "RRPRVREVSSRFMSPISSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr28" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "304", "end_pos": "321" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O80588-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O80588-1.13.13", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80588-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80588-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "O80588-1", "length": 474, "uniprot_id": "EDE1_ARATH", "protein_name": "Protein ENDOSPERM DEFECTIVE 1", "refseq_ac": "NP_181947", "refseq_name": "ENDOSPERM DEFECTIVE protein (DUF566)", "gene_name": "EDE1", "gene_names_uniprotkb": "EDE1; EMB3116; F6E13.32; QWRF5", "gene_names_refseq": "EDE1; EMB3116; EMBRYO DEFECTIVE 3116; ENDOSPERM DEFECTIVE 1; F6E13.32; QWRF domain containing 5; QWRF5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSSSSSSSSAGDLHQLTSN", "down_seq": "PRHHHQHQNQRSTSAQRMRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDC2", "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "site_lbl": "Ser66" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "304", "end_pos": "321" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80588-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "O80588-1", "length": 474, "uniprot_id": "EDE1_ARATH", "protein_name": "Protein ENDOSPERM DEFECTIVE 1", "refseq_ac": "NP_181947", "refseq_name": "ENDOSPERM DEFECTIVE protein (DUF566)", "gene_name": "EDE1", "gene_names_uniprotkb": "EDE1; EMB3116; F6E13.32; QWRF5", "gene_names_refseq": "EDE1; EMB3116; EMBRYO DEFECTIVE 3116; ENDOSPERM DEFECTIVE 1; F6E13.32; QWRF domain containing 5; QWRF5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80588", "url": "https://www.uniprot.org/uniprotkb/O80588" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEARIGR", "down_seq": "MEHPSTPAINAPAPVPPPST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80588", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80588" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "304", "end_pos": "321" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O80588-1.13.13", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O80588-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O80588-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80612-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "O80612-1", "length": 555, "uniprot_id": "APY6_ARATH", "protein_name": "Probable apyrase 6", "refseq_ac": "NP_565293", "refseq_name": "GDA1/CD39 nucleoside phosphatase family protein", "gene_name": "APY6", "gene_names_uniprotkb": "APY6; T17M13.14", "gene_names_refseq": "APY6; AtAPY6; T17M13.14; T17M13_14; apyrase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80612", "url": "https://www.uniprot.org/uniprotkb/O80612" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80612", "url": "https://www.uniprot.org/uniprotkb/O80612", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VTFVSSEPMPPEFSRTISFG", "down_seq": "VTYNLYSHSFLHFGQNAAHD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn267", "evidence": [ { "id": "O80612", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80612#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "348", "end_pos": "348" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80612-1.348.348", "start_pos": 348, "end_pos": 348, "uniprot_canonical_ac": "O80612-1", "length": 555, "uniprot_id": "APY6_ARATH", "protein_name": "Probable apyrase 6", "refseq_ac": "NP_565293", "refseq_name": "GDA1/CD39 nucleoside phosphatase family protein", "gene_name": "APY6", "gene_names_uniprotkb": "APY6; T17M13.14", "gene_names_refseq": "APY6; AtAPY6; T17M13.14; T17M13_14; apyrase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80612", "url": "https://www.uniprot.org/uniprotkb/O80612" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80612", "url": "https://www.uniprot.org/uniprotkb/O80612", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HLSGLLAEESRLSDSFQAGG", "down_seq": "YSQCRSAALTILQDGNEKCS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn348", "evidence": [ { "id": "O80612", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80612#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "348", "end_pos": "348" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80653-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IQETAEETKAAIEKIVNVRL", "down_seq": "AAQPSNIARQSGDSQYIKYK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser172" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O80653-1.177.177", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EETKAAIEKIVNVRLSAAQP", "down_seq": "NIARQSGDSQYIKYKPSQQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser177" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O80653-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKSLNDLPAPKSTTTTYYDH", "down_seq": "NDAWFKNRVTESETVKSSSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "O80653-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O80653-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80653-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EMPVDPLDPPKFKHKRVPRA", "down_seq": "GSPPVPVMHSPPRPVTVKDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser233" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O80653-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O80653-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O80653-1.249.249", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.235.235", "start_pos": 235, "end_pos": 235, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" }, { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVDPLDPPKFKHKRVPRASG", "down_seq": "PPVPVMHSPPRPVTVKDQQD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser235" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80653-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80653-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O80653-1.249.249", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" }, { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KFKHKRVPRASGSPPVPVMH", "down_seq": "PPRPVTVKDQQDWKIPPCIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O80653-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80653-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80653-1.249.249", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VPRASGSPPVPVMHSPPRPV", "down_seq": "VKDQQDWKIPPCISNWKNPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr249" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O80653-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O80653-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80653-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTTTYYDHSNDAWFKNRVTE", "down_seq": "ETVKSSSIKFKVVPAYLNRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O80653-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80653-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80653-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.356.356", "start_pos": 356, "end_pos": 356, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RALAQKARSERTGAAMSMPV", "down_seq": "SDRGRSESVDPRGDYDNYDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser356" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O80653-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80653-1.364.364", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TTYYDHSNDAWFKNRVTESE", "down_seq": "VKSSSIKFKVVPAYLNRQGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr35" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O80653-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80653-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80653-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARSERTGAAMSMPVSSDRGR", "down_seq": "ESVDPRGDYDNYDQDRGRER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser362" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O80653-1.356.356", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80653-1.364.364", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.364.364", "start_pos": 364, "end_pos": 364, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SERTGAAMSMPVSSDRGRSE", "down_seq": "VDPRGDYDNYDQDRGRERER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser364" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O80653-1.356.356", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80653-1.362.362", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DHSNDAWFKNRVTESETVKS", "down_seq": "SIKFKVVPAYLNRQGLRPKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80653-1.21.21", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80653-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80653-1.35.35", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.449.449", "start_pos": 449, "end_pos": 449, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KITRDRDRDISEKVALGMAS", "down_seq": "GGKGGGEVMYDQRLFNQDKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr449" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.578.578", "start_pos": 578, "end_pos": 578, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLEKWVSDLKKGKKPLDKIG", "down_seq": "GGTMRASGGGGSSSRDDDHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser578" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "O80653-1.590.590", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80653-1.590.590", "start_pos": 590, "end_pos": 590, "uniprot_canonical_ac": "O80653-1", "length": 613, "uniprot_id": "SKIP_ARATH", "protein_name": "SNW/SKI-interacting protein", "refseq_ac": "NP_001031291", "refseq_name": "chromatin protein family", "gene_name": "SKIP", "gene_names_uniprotkb": "SKIP; EIP1; T14N5.5", "gene_names_refseq": "SKIP; SNW/Ski-interacting protein; T14N5.5; T14N5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80653", "url": "https://www.uniprot.org/uniprotkb/O80653" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKPLDKIGSGGTMRASGGGG", "down_seq": "SSRDDDHGGSGRTKINFERS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80653", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80653" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser590" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "590", "end_pos": "590" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O80653-1.578.578", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGICHGKPVEQQSK", "down_seq": "LPVSGETNEAPTNSQPPAKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O80673-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O80673-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KKGSLKGQEVAVKVIPKSKM", "down_seq": "TAIAIEDVSREVKMLRALTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Thr163" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGICHGKPVEQQSKSLPV", "down_seq": "GETNEAPTNSQPPAKSSGFP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser19" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80673-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80673-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KPVEQQSKSLPVSGETNEAP", "down_seq": "NSQPPAKSSGFPFYSPSPVP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Thr27" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O80673-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80673-1.19.19", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IDFGLSDYVKPDERLNDIVG", "down_seq": "AYYVAPEVLHRTYGTEADMW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "site_lbl": "Ser291" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80673-1.333.333", "start_pos": 333, "end_pos": 333, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] }, { "title": "Calcium-dependent protein kinases from Arabidopsis show substrate specificity differences in an analysis of 103 substrates.", "journal": "Frontiers in plant science", "date": "2011", "authors": "Curran Amy, Chang Ing-Feng, Chang Chia-Lun, Garg Shilpi, Miguel Rodriguez Milla, Barron Yoshimi D, Li Ying, Romanowsky Shawn, Cushman John C, Gribskov Michael, Harmon Alice C, Harper Jeffrey F", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "22645532", "url": "https://glygen.org/publication/PubMed/22645532" } ] } ], "crossref": [ { "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22645532", "url": "https://glygen.org/publication/PubMed/22645532", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGVIAYILLCGSRPFWARTE", "down_seq": "GIFRAVLKAEPNFEEAPWPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CPK1 and CPK34", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "PubMed", "id": "22645532", "url": "https://glygen.org/publication/PubMed/22645532" } ], "site_lbl": "Ser333" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PAKSSGFPFYSPSPVPSLFK", "down_seq": "SPSVSSSVSSTPLRIFKRPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser52" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80673-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80673-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKSSGFPFYSPSPVPSLFKS", "down_seq": "PSVSSSVSSTPLRIFKRPFP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser53" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80673-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80673-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.557.557", "start_pos": 557, "end_pos": 557, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSVPVHVVLQDWIRHSDGKL", "down_seq": "FLGFVRLLHGVSSRTLQKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "site_lbl": "Ser557" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80673-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSGFPFYSPSPVPSLFKSSP", "down_seq": "VSSSVSSTPLRIFKRPFPPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser55" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80673-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80673-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GFPFYSPSPVPSLFKSSPSV", "down_seq": "SSVSSTPLRIFKRPFPPPSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser57" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O80673-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80673-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80673-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O80673-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.58.58", "start_pos": 58, "end_pos": 58, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FPFYSPSPVPSLFKSSPSVS", "down_seq": "SVSSTPLRIFKRPFPPPSPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser58" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O80673-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80673-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80673-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80673-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PFYSPSPVPSLFKSSPSVSS", "down_seq": "VSSTPLRIFKRPFPPPSPAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser59" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O80673-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80673-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80673-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O80673-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.61.61", "start_pos": 61, "end_pos": 61, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YSPSPVPSLFKSSPSVSSSV", "down_seq": "STPLRIFKRPFPPPSPAKHI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser61" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O80673-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80673-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80673-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O80673-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPSPVPSLFKSSPSVSSSVS", "down_seq": "TPLRIFKRPFPPPSPAKHIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser62" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O80673-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O80673-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O80673-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O80673-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" }, { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PSPVPSLFKSSPSVSSSVSS", "down_seq": "PLRIFKRPFPPPSPAKHIRA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr63" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O80673-1.52.52", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O80673-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80673-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O80673-1.76.76", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80673-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "O80673-1", "length": 576, "uniprot_id": "CAMK1_ARATH", "protein_name": "CDPK-related kinase 1", "refseq_ac": "NP_181647", "refseq_name": "CDPK-related kinase 1", "gene_name": "CRK1", "gene_names_uniprotkb": "CRK1; CBK3; CaMK3; T3K9.9", "gene_names_refseq": "ATCBK3; ATCRK1; CDPK-related kinase 1; CRK1; T3K9.9; T3K9_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80673", "url": "https://www.uniprot.org/uniprotkb/O80673" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSSSVSSTPLRIFKRPFPPP", "down_seq": "PAKHIRAFLARRYGSVKPNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80673", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80673" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser76" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O80673-1.57.57", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O80673-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O80673-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O80673-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O80673-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O80673-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80722-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "O80722-1", "length": 588, "uniprot_id": "PME4_ARATH", "protein_name": "Pectinesterase 4", "refseq_ac": "NP_182226", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME4", "gene_names_uniprotkb": "PME4; ARATH18; F14M4.14; VGDH1", "gene_names_refseq": "F14M4.14; VGDH1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80722", "url": "https://www.uniprot.org/uniprotkb/O80722" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80722", "url": "https://www.uniprot.org/uniprotkb/O80722", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IFHTVVSAMAKINNKVDDLK", "down_seq": "MTGGIPTPGAPPVVDESPVA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn206", "evidence": [ { "id": "O80722", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80722#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "206", "end_pos": "206" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O80722-1.213.213", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80722-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "O80722-1", "length": 588, "uniprot_id": "PME4_ARATH", "protein_name": "Pectinesterase 4", "refseq_ac": "NP_182226", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME4", "gene_names_uniprotkb": "PME4; ARATH18; F14M4.14; VGDH1", "gene_names_refseq": "F14M4.14; VGDH1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80722", "url": "https://www.uniprot.org/uniprotkb/O80722" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AMAKINNKVDDLKNMTGGIP", "down_seq": "PGAPPVVDESPVADPDGPAR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr213", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "206", "end_pos": "206" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O80722-1.206.206", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80722-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "O80722-1", "length": 588, "uniprot_id": "PME4_ARATH", "protein_name": "Pectinesterase 4", "refseq_ac": "NP_182226", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME4", "gene_names_uniprotkb": "PME4; ARATH18; F14M4.14; VGDH1", "gene_names_refseq": "F14M4.14; VGDH1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80722", "url": "https://www.uniprot.org/uniprotkb/O80722" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80722", "url": "https://www.uniprot.org/uniprotkb/O80722", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KKKNNIFMFGDGARKTVISY", "down_seq": "RSVALSRGTTTSLSATVQVE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn342", "evidence": [ { "id": "O80722", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80722#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "206", "end_pos": "206" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80722-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "O80722-1", "length": 588, "uniprot_id": "PME4_ARATH", "protein_name": "Pectinesterase 4", "refseq_ac": "NP_182226", "refseq_name": "Plant invertase/pectin methylesterase inhibitor superfamily", "gene_name": "PME4", "gene_names_uniprotkb": "PME4; ARATH18; F14M4.14; VGDH1", "gene_names_refseq": "F14M4.14; VGDH1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80722", "url": "https://www.uniprot.org/uniprotkb/O80722" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80722", "url": "https://www.uniprot.org/uniprotkb/O80722", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PNKLIKAFMLATKDELTKSS", "down_seq": "FTGQTEVNMGSSISPNNKAV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn86", "evidence": [ { "id": "O80722", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80722#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "206", "end_pos": "206" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80775-1.302.302", "start_pos": 302, "end_pos": 302, "uniprot_canonical_ac": "O80775-1", "length": 353, "uniprot_id": "WDR55_ARATH", "protein_name": "WD repeat-containing protein 55", "refseq_ac": "NP_565782", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "WDR55", "gene_names_uniprotkb": "WDR55", "gene_names_refseq": "F13P17.10; F13P17_10; WDR55; human WDR55 (WD40 repeat) homolog", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80775", "url": "https://www.uniprot.org/uniprotkb/O80775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HDSMLKLWNLEEILEGSNVN", "down_seq": "GNASGAAEDSDSDNDGMDLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser302" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O80775-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O80775-1.312.312", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O80775-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80775-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "O80775-1", "length": 353, "uniprot_id": "WDR55_ARATH", "protein_name": "WD repeat-containing protein 55", "refseq_ac": "NP_565782", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "WDR55", "gene_names_uniprotkb": "WDR55", "gene_names_refseq": "F13P17.10; F13P17_10; WDR55; human WDR55 (WD40 repeat) homolog", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80775", "url": "https://www.uniprot.org/uniprotkb/O80775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKLWNLEEILEGSNVNSGNA", "down_seq": "GAAEDSDSDNDGMDLDNDPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser306" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80775-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80775-1.312.312", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80775-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80775-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "O80775-1", "length": 353, "uniprot_id": "WDR55_ARATH", "protein_name": "WD repeat-containing protein 55", "refseq_ac": "NP_565782", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "WDR55", "gene_names_uniprotkb": "WDR55", "gene_names_refseq": "F13P17.10; F13P17_10; WDR55; human WDR55 (WD40 repeat) homolog", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80775", "url": "https://www.uniprot.org/uniprotkb/O80775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEILEGSNVNSGNASGAAED", "down_seq": "DSDNDGMDLDNDPSKSSKGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser312" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O80775-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80775-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80775-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80775-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "O80775-1", "length": 353, "uniprot_id": "WDR55_ARATH", "protein_name": "WD repeat-containing protein 55", "refseq_ac": "NP_565782", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "WDR55", "gene_names_uniprotkb": "WDR55", "gene_names_refseq": "F13P17.10; F13P17_10; WDR55; human WDR55 (WD40 repeat) homolog", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80775", "url": "https://www.uniprot.org/uniprotkb/O80775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ILEGSNVNSGNASGAAEDSD", "down_seq": "DNDGMDLDNDPSKSSKGSKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser314" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O80775-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80775-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80775-1.312.312", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80775-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "O80775-1", "length": 353, "uniprot_id": "WDR55_ARATH", "protein_name": "WD repeat-containing protein 55", "refseq_ac": "NP_565782", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "WDR55", "gene_names_uniprotkb": "WDR55", "gene_names_refseq": "F13P17.10; F13P17_10; WDR55; human WDR55 (WD40 repeat) homolog", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80775", "url": "https://www.uniprot.org/uniprotkb/O80775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STNLVAAGLIDGHLHLYRYD", "down_seq": "DSSLVRERKVRAHKESCRAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser37" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O80775-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80775-1.40.40", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80775-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "O80775-1", "length": 353, "uniprot_id": "WDR55_ARATH", "protein_name": "WD repeat-containing protein 55", "refseq_ac": "NP_565782", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "WDR55", "gene_names_uniprotkb": "WDR55", "gene_names_refseq": "F13P17.10; F13P17_10; WDR55; human WDR55 (WD40 repeat) homolog", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80775", "url": "https://www.uniprot.org/uniprotkb/O80775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLVAAGLIDGHLHLYRYDSD", "down_seq": "SLVRERKVRAHKESCRAVRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80775-1.37.37", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80775-1.40.40", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80775-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "O80775-1", "length": 353, "uniprot_id": "WDR55_ARATH", "protein_name": "WD repeat-containing protein 55", "refseq_ac": "NP_565782", "refseq_name": "transducin family protein / WD-40 repeat family protein", "gene_name": "WDR55", "gene_names_uniprotkb": "WDR55", "gene_names_refseq": "F13P17.10; F13P17_10; WDR55; human WDR55 (WD40 repeat) homolog", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80775", "url": "https://www.uniprot.org/uniprotkb/O80775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVAAGLIDGHLHLYRYDSDS", "down_seq": "LVRERKVRAHKESCRAVRFI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80775" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80775-1.37.37", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80775-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80809-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QIHPSLCKLSSLQSLDLSHN", "down_seq": "FSGNIPSCFGSLRNLRTLNL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn108", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O80809-1.127.127", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NNFSGNIPSCFGSLRNLRTL", "down_seq": "LSRNRFVGSIPATFVSLKEL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn127", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O80809-1.108.108", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.168.168", "start_pos": 168, "end_pos": 168, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "REVVLSENRDLGGVVPHWFG", "down_seq": "FSMNLERVDFSFCSFVGELP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn168", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ELPESLLYLKSLKYLNLESN", "down_seq": "MTGTLRDFQQPLVVLNLASN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn206", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.270.270", "start_pos": 270, "end_pos": 270, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSLVGGLPSCLGSLKELSHL", "down_seq": "LSFNGFNYEISPRLMFSEKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn270", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LQALRLSHNLLTGDIPARIG", "down_seq": "LTYLQVIDLSHNALTGSIPL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn361", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.398.398", "start_pos": 398, "end_pos": 398, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SIPLNIVGCFQLLALMISNN", "down_seq": "LSGEIQPELDALDSLKILDI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn398", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.446.446", "start_pos": 446, "end_pos": 446, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EIPLTLAGLKSLEIVDISSN", "down_seq": "LSGNLNEAITKWSNLKYLSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn446", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DLDPQDKASLLIFRVSIHDL", "down_seq": "RSLSTWYGSSCSNWTGLACQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn49", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "O80809-1.62.62", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.505.505", "start_pos": 505, "end_pos": 505, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IQMIDYSSNRFSWFIPDDNL", "down_seq": "STRFKDFQTGGGEGFAEPPG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn505", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.578.578", "start_pos": 578, "end_pos": 578, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NLLHGEIPEALFRQKNIEYL", "down_seq": "LSYNFLEGQLPRLEKLPRLK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn578", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.614.614", "start_pos": 614, "end_pos": 614, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LPRLKALDLSHNSLSGQVIG", "down_seq": "ISAPPGLTLLNLSHNCFSGI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn614", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "O80809-1.625.625", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.625.625", "start_pos": 625, "end_pos": 625, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSLSGQVIGNISAPPGLTLL", "down_seq": "LSHNCFSGIITEKEGLGKFP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn625", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O80809-1.614.614", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RVSIHDLNRSLSTWYGSSCS", "down_seq": "WTGLACQNPTGKVLSLTLSG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn62", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O80809-1.49.49", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80809-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "O80809-1", "length": 720, "uniprot_id": "CLV2_ARATH", "protein_name": "Receptor-like protein CLAVATA2", "refseq_ac": "NP_176717", "refseq_name": "Leucine-rich repeat (LRR) family protein", "gene_name": "CLV2", "gene_names_uniprotkb": "CLV2; RLP10; T8F5.16", "gene_names_refseq": "AtRLP10; CLV2; Receptor Like Protein 10; T8F5.16; T8F5_16; clavata 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80809", "url": "https://www.uniprot.org/uniprotkb/O80809", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGLACQNPTGKVLSLTLSGL", "down_seq": "LSSQIHPSLCKLSSLQSLDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn84", "evidence": [ { "id": "O80809", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80809#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "398", "end_pos": "398" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80822-1.207.207", "start_pos": 207, "end_pos": 207, "uniprot_canonical_ac": "O80822-1", "length": 328, "uniprot_id": "PER25_ARATH", "protein_name": "Peroxidase 25", "refseq_ac": "NP_181679", "refseq_name": "peroxidase superfamily protein", "gene_name": "PER25", "gene_names_uniprotkb": "PER25; P25; T26J13.7", "gene_names_refseq": "AtPRX25; PRX25; T26J13.7; T26J13_7; peroxidase 25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80822", "url": "https://www.uniprot.org/uniprotkb/O80822" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80822", "url": "https://www.uniprot.org/uniprotkb/O80822", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LLGAHTIGQTDCLFFRYRLY", "down_seq": "FTVTGNSDPTISPSFLTQLK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn207", "evidence": [ { "id": "O80822", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80822#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "207", "end_pos": "207" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80840-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "O80840-1", "length": 246, "uniprot_id": "PMM_ARATH", "protein_name": "Phosphomannomutase", "refseq_ac": "NP_182103", "refseq_name": "phosphomannomutase", "gene_name": "PMM", "gene_names_uniprotkb": "PMM; F4I18.23", "gene_names_refseq": "ATPMM; F4I18.23; PHOSPHOMANNOMUTASE; PMM; phosphomannomutase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A Temperature-sensitive mutation in the Arabidopsis thaliana phosphomannomutase gene disrupts protein glycosylation and triggers cell death.", "journal": "The Journal of biological chemistry", "date": "2008-02-29", "authors": "Hoeberichts Frank A, Vaeck Elke, Kiddle Guy, Coppens Emmy, van de Cotte Brigitte, Adamantidis Antoine, Ormenese Sandra, Foyer Christine H, Zabeau Marc, Inz\u00e9 Dirk, P\u00e9rilleux Claire, Van Breusegem Frank, Vuylsteke Marnik", "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" } ], "reference": [ { "type": "PubMed", "id": "18086684", "url": "https://glygen.org/publication/PubMed/18086684" } ] } ], "crossref": [ { "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18086684", "url": "https://glygen.org/publication/PubMed/18086684", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "TLTAPRKEATPELLDFIREL", "down_seq": "KVVTIGVVGGSDLSKISEQL", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "Q", "comment": "In pmm-2; 86% reduction of catalytic activity. In pmm-12/dgr1; 92% reduction of catalytic activity resulting in lethality when grown at restrictive temperature; when associated with R-7.", "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" }, { "database": "PubMed", "id": "18086684", "url": "https://glygen.org/publication/PubMed/18086684" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "232", "end_pos": "232" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80840-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "O80840-1", "length": 246, "uniprot_id": "PMM_ARATH", "protein_name": "Phosphomannomutase", "refseq_ac": "NP_182103", "refseq_name": "phosphomannomutase", "gene_name": "PMM", "gene_names_uniprotkb": "PMM; F4I18.23", "gene_names_refseq": "ATPMM; F4I18.23; PHOSPHOMANNOMUTASE; PMM; phosphomannomutase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A Temperature-sensitive mutation in the Arabidopsis thaliana phosphomannomutase gene disrupts protein glycosylation and triggers cell death.", "journal": "The Journal of biological chemistry", "date": "2008-02-29", "authors": "Hoeberichts Frank A, Vaeck Elke, Kiddle Guy, Coppens Emmy, van de Cotte Brigitte, Adamantidis Antoine, Ormenese Sandra, Foyer Christine H, Zabeau Marc, Inz\u00e9 Dirk, P\u00e9rilleux Claire, Van Breusegem Frank, Vuylsteke Marnik", "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" } ], "reference": [ { "type": "PubMed", "id": "18086684", "url": "https://glygen.org/publication/PubMed/18086684" } ] } ], "crossref": [ { "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18086684", "url": "https://glygen.org/publication/PubMed/18086684", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "MAAKIP", "down_seq": "VIALFDVDGTLTAPRKEATP", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "In pmm-1; 18% reduction of catalytic activity. In pmm-12/dgr1; 92% reduction of catalytic activity resulting in lethality when grown at restrictive temperature; when associated with Q-37.", "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" }, { "database": "PubMed", "id": "18086684", "url": "https://glygen.org/publication/PubMed/18086684" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "232", "end_pos": "232" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80840-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "O80840-1", "length": 246, "uniprot_id": "PMM_ARATH", "protein_name": "Phosphomannomutase", "refseq_ac": "NP_182103", "refseq_name": "phosphomannomutase", "gene_name": "PMM", "gene_names_uniprotkb": "PMM; F4I18.23", "gene_names_refseq": "ATPMM; F4I18.23; PHOSPHOMANNOMUTASE; PMM; phosphomannomutase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTYEGGNDYEIYESPKTIGH", "down_seq": "VTSPDDTVAKCKALFMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "232", "end_pos": "232" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O80840-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80840-1.232.232", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80840-1.231.231", "start_pos": 231, "end_pos": 231, "uniprot_canonical_ac": "O80840-1", "length": 246, "uniprot_id": "PMM_ARATH", "protein_name": "Phosphomannomutase", "refseq_ac": "NP_182103", "refseq_name": "phosphomannomutase", "gene_name": "PMM", "gene_names_uniprotkb": "PMM; F4I18.23", "gene_names_refseq": "ATPMM; F4I18.23; PHOSPHOMANNOMUTASE; PMM; phosphomannomutase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YEGGNDYEIYESPKTIGHSV", "down_seq": "SPDDTVAKCKALFMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr231" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "232", "end_pos": "232" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80840-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80840-1.232.232", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80840-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "O80840-1", "length": 246, "uniprot_id": "PMM_ARATH", "protein_name": "Phosphomannomutase", "refseq_ac": "NP_182103", "refseq_name": "phosphomannomutase", "gene_name": "PMM", "gene_names_uniprotkb": "PMM; F4I18.23", "gene_names_refseq": "ATPMM; F4I18.23; PHOSPHOMANNOMUTASE; PMM; phosphomannomutase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80840", "url": "https://www.uniprot.org/uniprotkb/O80840" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGGNDYEIYESPKTIGHSVT", "down_seq": "PDDTVAKCKALFMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80840", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80840" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "232", "end_pos": "232" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80840-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80840-1.231.231", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the chloroplast signal recognition particle (SRP) receptor: domain arrangement modulates SRP-receptor interaction.", "journal": "Journal of molecular biology", "date": "2008-01-11", "authors": "Chandrasekar Sowmya, Chartron Justin, Jaru-Ampornpan Peera, Shan Shu-ou", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "18035371", "url": "https://glygen.org/publication/PubMed/18035371" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18035371", "url": "https://glygen.org/publication/PubMed/18035371", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "NLAETDRVLDELEEALLVSD", "down_seq": "GPKITVRIVERLREDIMSGK", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "V", "comment": "Reduced interaction with FFC.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "18035371", "url": "https://glygen.org/publication/PubMed/18035371" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.321.321", "start_pos": 321, "end_pos": 321, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Efficient interaction between two GTPases allows the chloroplast SRP pathway to bypass the requirement for an SRP RNA.", "journal": "Molecular biology of the cell", "date": "2007-07", "authors": "Jaru-Ampornpan Peera, Chandrasekar Sowmya, Shan Shu-ou", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "17475780", "url": "https://glygen.org/publication/PubMed/17475780" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17475780", "url": "https://glygen.org/publication/PubMed/17475780", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "PQAREFNEVVGITGLILTKL", "down_seq": "GSARGGCVVSVVEELGIPVK", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Loss of GTP binding specificity.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "17475780", "url": "https://glygen.org/publication/PubMed/17475780" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O80842-1.326.326", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A distinct mechanism to achieve efficient signal recognition particle (SRP)-SRP receptor interaction by the chloroplast srp pathway.", "journal": "Molecular biology of the cell", "date": "2009-09", "authors": "Jaru-Ampornpan Peera, Nguyen Thang X, Shan Shu-Ou", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "19587121", "url": "https://glygen.org/publication/PubMed/19587121" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19587121", "url": "https://glygen.org/publication/PubMed/19587121", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "FNEVVGITGLILTKLDGSAR", "down_seq": "GCVVSVVEELGIPVKFIGVG", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "W", "comment": "Reduced interaction with FFC, but no effect on the basal GTPase activity.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "19587121", "url": "https://glygen.org/publication/PubMed/19587121" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O80842-1.321.321", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80842-1.344.344", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.344.344", "start_pos": 344, "end_pos": 344, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis cpFtsY mutants exhibit pleiotropic defects including an inability to increase iron deficiency-inducible root Fe(III) chelate reductase activity.", "journal": "The Plant journal : for cell and molecular biology", "date": "2006-08", "authors": "Durrett Timothy P, Connolly Erin L, Rogers Elizabeth E", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "16813577", "url": "https://glygen.org/publication/PubMed/16813577" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16813577", "url": "https://glygen.org/publication/PubMed/16813577", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "ARGGCVVSVVEELGIPVKFI", "down_seq": "VGEAVEDLQPFDPEAFVNAI", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In frd4-2; chlorotic and reduction in thylakoid membrane content and stacking.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "16813577", "url": "https://glygen.org/publication/PubMed/16813577" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80842-1.326.326", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "LRGEFRPRMTRFRCSAGPSG", "down_seq": "FTRLGRLIKEKAKSDVEKVF", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced binding to the thylakoid and 80% reduction of LHCP integration in thylakoids, but no effect on GTP binding. Reduced binding to the thylakoid and 80% reduction of LHCP integration in thylakoids; when associated with A-49.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] }, { "sequence_org": "F", "sequence_mut": "E", "comment": "Severe reduction of LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] }, { "sequence_org": "F", "sequence_mut": "G", "comment": "Severe reduction of LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] }, { "sequence_org": "F", "sequence_mut": "K", "comment": "Severe reduction of LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] }, { "sequence_org": "F", "sequence_mut": "L", "comment": "No or limited reduction of LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] }, { "sequence_org": "F", "sequence_mut": "Q", "comment": "Severe reduction of LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] }, { "sequence_org": "F", "sequence_mut": "V", "comment": "No or limited reduction of LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] }, { "sequence_org": "F", "sequence_mut": "W", "comment": "No or limited reduction of LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] }, { "sequence_org": "F", "sequence_mut": "Y", "comment": "No or limited reduction of LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80842-1.49.49", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80842-1.51.51", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80842-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80842-1.54.54", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80842-1.56.56", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80842-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "RGEFRPRMTRFRCSAGPSGF", "down_seq": "TRLGRLIKEKAKSDVEKVFS", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced binding to the thylakoid and 40% reduction of LHCP integration in thylakoids. Reduced binding to the thylakoid and 80% reduction of LHCP integration in thylakoids; when associated with A-48.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80842-1.48.48", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80842-1.51.51", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80842-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80842-1.54.54", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O80842-1.56.56", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80842-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The membrane-binding motif of the chloroplast signal recognition particle receptor (cpFtsY) regulates GTPase activity.", "journal": "The Journal of biological chemistry", "date": "2009-05-29", "authors": "Marty Naomi J, Rajalingam Dakshinamurthy, Kight Alicia D, Lewis Nathaniel E, Fologea Daniel, Kumar Thallapuranam Krishnaswamy Suresh, Henry Ralph L, Goforth Robyn L", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "EFRPRMTRFRCSAGPSGFFT", "down_seq": "LGRLIKEKAKSDVEKVFSGF", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduced binding to the thylakoid and LHCP integration in thylakoids; when associated with A-54.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80842-1.48.48", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80842-1.49.49", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80842-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80842-1.54.54", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80842-1.56.56", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O80842-1.71.71", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The membrane-binding motif of the chloroplast signal recognition particle receptor (cpFtsY) regulates GTPase activity.", "journal": "The Journal of biological chemistry", "date": "2009-05-29", "authors": "Marty Naomi J, Rajalingam Dakshinamurthy, Kight Alicia D, Lewis Nathaniel E, Fologea Daniel, Kumar Thallapuranam Krishnaswamy Suresh, Henry Ralph L, Goforth Robyn L", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "FRPRMTRFRCSAGPSGFFTR", "down_seq": "GRLIKEKAKSDVEKVFSGFS", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Reduced binding to the thylakoid and LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] }, { "sequence_org": "L", "sequence_mut": "Q", "comment": "Reduced binding to the thylakoid and LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80842-1.48.48", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80842-1.49.49", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80842-1.51.51", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80842-1.54.54", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80842-1.56.56", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O80842-1.71.71", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The membrane-binding motif of the chloroplast signal recognition particle receptor (cpFtsY) regulates GTPase activity.", "journal": "The Journal of biological chemistry", "date": "2009-05-29", "authors": "Marty Naomi J, Rajalingam Dakshinamurthy, Kight Alicia D, Lewis Nathaniel E, Fologea Daniel, Kumar Thallapuranam Krishnaswamy Suresh, Henry Ralph L, Goforth Robyn L", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "PRMTRFRCSAGPSGFFTRLG", "down_seq": "LIKEKAKSDVEKVFSGFSKT", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduced binding to the thylakoid and LHCP integration in thylakoids; when associated with A-51.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O80842-1.48.48", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80842-1.49.49", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80842-1.51.51", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80842-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80842-1.56.56", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O80842-1.71.71", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The membrane-binding motif of the chloroplast signal recognition particle receptor (cpFtsY) regulates GTPase activity.", "journal": "The Journal of biological chemistry", "date": "2009-05-29", "authors": "Marty Naomi J, Rajalingam Dakshinamurthy, Kight Alicia D, Lewis Nathaniel E, Fologea Daniel, Kumar Thallapuranam Krishnaswamy Suresh, Henry Ralph L, Goforth Robyn L", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "MTRFRCSAGPSGFFTRLGRL", "down_seq": "KEKAKSDVEKVFSGFSKTRE", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "A", "comment": "Reduced binding to the thylakoid and LHCP integration in thylakoids.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "19293157", "url": "https://glygen.org/publication/PubMed/19293157" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O80842-1.48.48", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O80842-1.49.49", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80842-1.51.51", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80842-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80842-1.54.54", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O80842-1.71.71", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the chloroplast signal recognition particle (SRP) receptor: domain arrangement modulates SRP-receptor interaction.", "journal": "Journal of molecular biology", "date": "2008-01-11", "authors": "Chandrasekar Sowmya, Chartron Justin, Jaru-Ampornpan Peera, Shan Shu-ou", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "18035371", "url": "https://glygen.org/publication/PubMed/18035371" } ] }, { "title": "A distinct mechanism to achieve efficient signal recognition particle (SRP)-SRP receptor interaction by the chloroplast srp pathway.", "journal": "Molecular biology of the cell", "date": "2009-09", "authors": "Jaru-Ampornpan Peera, Nguyen Thang X, Shan Shu-Ou", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "reference": [ { "type": "PubMed", "id": "19587121", "url": "https://glygen.org/publication/PubMed/19587121" } ] } ], "crossref": [ { "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18035371", "url": "https://glygen.org/publication/PubMed/18035371", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19587121", "url": "https://glygen.org/publication/PubMed/19587121", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "RLGRLIKEKAKSDVEKVFSG", "down_seq": "SKTRENLAVIDELLLFWNLA", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced interaction with FFC, but no effect on the basal GTPase activity.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "18035371", "url": "https://glygen.org/publication/PubMed/18035371" }, { "database": "PubMed", "id": "19587121", "url": "https://glygen.org/publication/PubMed/19587121" } ] }, { "sequence_org": "F", "sequence_mut": "L", "comment": "Reduced interaction with FFC, but no effect on the basal GTPase activity.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "18035371", "url": "https://glygen.org/publication/PubMed/18035371" }, { "database": "PubMed", "id": "19587121", "url": "https://glygen.org/publication/PubMed/19587121" } ] }, { "sequence_org": "F", "sequence_mut": "V", "comment": "Reduced interaction with FFC, but no effect on the basal GTPase activity.", "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" }, { "database": "PubMed", "id": "18035371", "url": "https://glygen.org/publication/PubMed/18035371" }, { "database": "PubMed", "id": "19587121", "url": "https://glygen.org/publication/PubMed/19587121" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O80842-1.51.51", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "downstream", "id": "O80842-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O80842-1.54.54", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O80842-1.56.56", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80842-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "O80842-1", "length": 366, "uniprot_id": "CFTSY_ARATH", "protein_name": "Cell division protein FtsY homolog, chloroplastic", "refseq_ac": "NP_566056", "refseq_name": "signal recognition particle receptor protein, chloroplast (FTSY)", "gene_name": "CPFTSY", "gene_names_uniprotkb": "CPFTSY; F4I18.25; FTSY", "gene_names_refseq": "ALPHA SUBUNIT CPFTSY; CHLOROPLAST SRP RECEPTOR HOMOLOG; CPFTSY; F4I18.25; FERRIC CHELATE REDUCTASE DEFECTIVE 4; FRD4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80842", "url": "https://www.uniprot.org/uniprotkb/O80842" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80842", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KITVRIVERLREDIMSGKLK", "down_seq": "GSEIKDALKESVLEMLAKKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80842", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80842" } ], "site_lbl": "Ser132" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80845-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "O80845-1", "length": 236, "uniprot_id": "PX11D_ARATH", "protein_name": "Peroxisomal membrane protein 11D", "refseq_ac": "NP_001031544", "refseq_name": "peroxin 11D", "gene_name": "PEX11D", "gene_names_uniprotkb": "PEX11D; F4I18.28", "gene_names_refseq": "F4I18.28; PEX11D; peroxin 11D", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80845", "url": "https://www.uniprot.org/uniprotkb/O80845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O80845", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80845" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "O80845", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80845", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NKAEARDKLCRAIQYGSKFL", "down_seq": "GGQPGTAQNVDKSTSLARKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80845", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80845" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "40", "end_pos": "40" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80852-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "O80852-1", "length": 215, "uniprot_id": "GSTF9_ARATH", "protein_name": "Glutathione S-transferase F9", "refseq_ac": "NP_001077983", "refseq_name": "glutathione S-transferase PHI 9", "gene_name": "GSTF9", "gene_names_uniprotkb": "GSTF9; F7F1.7; GLUTTR; GSTF7; Phi9", "gene_names_refseq": "ATGSTF7; ATGSTF9; F7F1.7; F7F1_7; GLUTATHIONE TRANSFERASE; GLUTTR; GSTF9; glutathione S-transferase PHI 9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80852", "url": "https://www.uniprot.org/uniprotkb/O80852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80852", "url": "https://www.uniprot.org/uniprotkb/O80852" }, { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80852", "url": "https://www.uniprot.org/uniprotkb/O80852", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MVLKVYGPHFA", "down_seq": "PKRALVTLIEKGVAFETIPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80852", "url": "https://www.uniprot.org/uniprotkb/O80852" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80852-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "O80852-1", "length": 215, "uniprot_id": "GSTF9_ARATH", "protein_name": "Glutathione S-transferase F9", "refseq_ac": "NP_001077983", "refseq_name": "glutathione S-transferase PHI 9", "gene_name": "GSTF9", "gene_names_uniprotkb": "GSTF9; F7F1.7; GLUTTR; GSTF7; Phi9", "gene_names_refseq": "ATGSTF7; ATGSTF9; F7F1.7; F7F1_7; GLUTATHIONE TRANSFERASE; GLUTTR; GSTF9; glutathione S-transferase PHI 9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80852", "url": "https://www.uniprot.org/uniprotkb/O80852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDYKIFESRAVMRYVAEKYR", "down_seq": "QGPDLLGKTVEDRGQVEQWL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80852" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80871-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "O80871-1", "length": 396, "uniprot_id": "P2C25_ARATH", "protein_name": "Probable protein phosphatase 2C 25", "refseq_ac": "", "refseq_name": "", "gene_name": "F23F1.6", "gene_names_uniprotkb": "F23F1.6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The PP2C-type phosphatase AP2C1, which negatively regulates MPK4 and MPK6, modulates innate immunity, jasmonic acid, and ethylene levels in Arabidopsis.", "journal": "The Plant cell", "date": "2007-07", "authors": "Schweighofer Alois, Kazanaviciute Vaiva, Scheikl Elisabeth, Teige Markus, Doczi Robert, Hirt Heribert, Schwanninger Manfred, Kant Merijn, Schuurink Robert, Mauch Felix, Buchala Antony, Cardinale Francesca, Meskiene Irute", "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" } ], "reference": [ { "type": "PubMed", "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279" } ] } ], "crossref": [ { "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "AITNLHGDRKQAIFGVYDGH", "down_seq": "GVKAAEFAAKNLDKNIVEEV", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" }, { "database": "PubMed", "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80871-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "O80871-1", "length": 396, "uniprot_id": "P2C25_ARATH", "protein_name": "Probable protein phosphatase 2C 25", "refseq_ac": "", "refseq_name": "", "gene_name": "F23F1.6", "gene_names_uniprotkb": "F23F1.6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The PP2C-type phosphatase AP2C1, which negatively regulates MPK4 and MPK6, modulates innate immunity, jasmonic acid, and ethylene levels in Arabidopsis.", "journal": "The Plant cell", "date": "2007-07", "authors": "Schweighofer Alois, Kazanaviciute Vaiva, Scheikl Elisabeth, Teige Markus, Doczi Robert, Hirt Heribert, Schwanninger Manfred, Kant Merijn, Schuurink Robert, Mauch Felix, Buchala Antony, Cardinale Francesca, Meskiene Irute", "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" } ], "reference": [ { "type": "PubMed", "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279" } ] } ], "crossref": [ { "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LSFGSESVSASSPPGGVLKR", "down_seq": "RPTRLDIPIGVAGFVAPISS", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Abolishes interaction with MPK4 and MPK6; when associated with Q-99.", "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" }, { "database": "PubMed", "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80871-1.99.99", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80871-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "O80871-1", "length": 396, "uniprot_id": "P2C25_ARATH", "protein_name": "Probable protein phosphatase 2C 25", "refseq_ac": "", "refseq_name": "", "gene_name": "F23F1.6", "gene_names_uniprotkb": "F23F1.6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The PP2C-type phosphatase AP2C1, which negatively regulates MPK4 and MPK6, modulates innate immunity, jasmonic acid, and ethylene levels in Arabidopsis.", "journal": "The Plant cell", "date": "2007-07", "authors": "Schweighofer Alois, Kazanaviciute Vaiva, Scheikl Elisabeth, Teige Markus, Doczi Robert, Hirt Heribert, Schwanninger Manfred, Kant Merijn, Schuurink Robert, Mauch Felix, Buchala Antony, Cardinale Francesca, Meskiene Irute", "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" } ], "reference": [ { "type": "PubMed", "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279" } ] } ], "crossref": [ { "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "SFGSESVSASSPPGGVLKRK", "down_seq": "PTRLDIPIGVAGFVAPISSS", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "Q", "comment": "Abolishes interaction with MPK4 and MPK6; when associated with A-98.", "evidence": [ { "database": "UniProtKB", "id": "O80871", "url": "https://www.uniprot.org/uniprotkb/O80871" }, { "database": "PubMed", "id": "17630279", "url": "https://glygen.org/publication/PubMed/17630279" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80871-1.98.98", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80875-1.718.725", "start_pos": 718, "end_pos": 725, "uniprot_canonical_ac": "O80875-1", "length": 1002, "uniprot_id": "SMXL7_ARATH", "protein_name": "Protein SMAX1-LIKE 7", "refseq_ac": "NP_565689", "refseq_name": "Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein", "gene_name": "SMXL7", "gene_names_uniprotkb": "SMXL7; F23F1.11", "gene_names_refseq": "F23F1.11; F23F1_11; SMAX1-like 7; SMXL7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.", "journal": "The Plant cell", "date": "2015-11", "authors": "Soundappan Ishwarya, Bennett Tom, Morffy Nicholas, Liang Yueyang, Stanga John P, Abbas Amena, Leyser Ottoline, Nelson David C", "evidence": [ { "database": "UniProtKB", "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875" } ], "reference": [ { "type": "PubMed", "id": "26546447", "url": "https://glygen.org/publication/PubMed/26546447" } ] } ], "crossref": [ { "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26546447", "url": "https://glygen.org/publication/PubMed/26546447", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "FRGKTVVD", "start_aa": "F", "up_seq": "GGQDNFICVDFKSQDSLDDR", "down_seq": "YIAGEVARRADSVVFIENVE", "mutagenesis": [ { "sequence_org": "FRGKTVVD", "sequence_mut": "", "comment": "Resistant to degradation after strigolactone treatment.", "evidence": [ { "database": "UniProtKB", "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875" }, { "database": "PubMed", "id": "26546447", "url": "https://glygen.org/publication/PubMed/26546447" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "718", "end_pos": "725" }, { "start_pos": "854", "end_pos": "859" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "527", "end_pos": "527" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80875-1.854.859", "start_pos": 854, "end_pos": 859, "uniprot_canonical_ac": "O80875-1", "length": 1002, "uniprot_id": "SMXL7_ARATH", "protein_name": "Protein SMAX1-LIKE 7", "refseq_ac": "NP_565689", "refseq_name": "Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein", "gene_name": "SMXL7", "gene_names_uniprotkb": "SMXL7; F23F1.11", "gene_names_refseq": "F23F1.11; F23F1_11; SMAX1-like 7; SMXL7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.", "journal": "The Plant cell", "date": "2015-11", "authors": "Wang Lei, Wang Bing, Jiang Liang, Liu Xue, Li Xilong, Lu Zefu, Meng Xiangbing, Wang Yonghong, Smith Steven M, Li Jiayang", "evidence": [ { "database": "UniProtKB", "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875" } ], "reference": [ { "type": "PubMed", "id": "26546446", "url": "https://glygen.org/publication/PubMed/26546446" } ] } ], "crossref": [ { "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26546446", "url": "https://glygen.org/publication/PubMed/26546446", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "LDLNLP", "start_aa": "L", "up_seq": "QEEAETEVTELRALKSQRSF", "down_seq": "VDEIEANEDEAYTMSENTEA", "mutagenesis": [ { "sequence_org": "LDLNLP", "sequence_mut": "", "comment": "Loss of interaction with TPR2.", "evidence": [ { "database": "UniProtKB", "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875" }, { "database": "PubMed", "id": "26546446", "url": "https://glygen.org/publication/PubMed/26546446" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "718", "end_pos": "725" }, { "start_pos": "854", "end_pos": "859" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "527", "end_pos": "527" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80875-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "O80875-1", "length": 1002, "uniprot_id": "SMXL7_ARATH", "protein_name": "Protein SMAX1-LIKE 7", "refseq_ac": "NP_565689", "refseq_name": "Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein", "gene_name": "SMXL7", "gene_names_uniprotkb": "SMXL7; F23F1.11", "gene_names_refseq": "F23F1.11; F23F1_11; SMAX1-like 7; SMXL7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80875", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTTVEEDPPVSNSLMAAIKR", "down_seq": "QATQRRHPETYHLHQIHGNN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80875" } ], "site_lbl": "Ser114" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "718", "end_pos": "725" }, { "start_pos": "854", "end_pos": "859" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "527", "end_pos": "527" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80875-1.527.527", "start_pos": 527, "end_pos": 527, "uniprot_canonical_ac": "O80875-1", "length": 1002, "uniprot_id": "SMXL7_ARATH", "protein_name": "Protein SMAX1-LIKE 7", "refseq_ac": "NP_565689", "refseq_name": "Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein", "gene_name": "SMXL7", "gene_names_uniprotkb": "SMXL7; F23F1.11", "gene_names_refseq": "F23F1.11; F23F1_11; SMAX1-like 7; SMXL7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80875", "url": "https://www.uniprot.org/uniprotkb/O80875" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80875" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80875", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRPQFPLQLGSSSQTKMSLG", "down_seq": "PTEKIVCTRTSESFQGMVAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80875", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80875" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser527" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "718", "end_pos": "725" }, { "start_pos": "854", "end_pos": "859" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "527", "end_pos": "527" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80883-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "O80883-1", "length": 490, "uniprot_id": "MB101_ARATH", "protein_name": "Transcription factor MYB101", "refseq_ac": "NP_001077993", "refseq_name": "myb domain protein 101", "gene_name": "MYB101", "gene_names_uniprotkb": "MYB101; ABS7", "gene_names_refseq": "ABC transporter of the mitochondrion 1; ABNORMAL SHOOT 7; ABS7; ARABIDOPSIS THALIANA MYB 1; ATM1; ATMYB101; MYB101; T32F6.1; myb domain protein 101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80883", "url": "https://www.uniprot.org/uniprotkb/O80883" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80883", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80883", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MDGGGETTA", "down_seq": "ATMEGRGLKKGPWTTTEDAI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80883", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80883" } ], "site_lbl": "Thr10" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80888-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "O80888-1", "length": 372, "uniprot_id": "M3K17_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 17", "refseq_ac": "NP_180810", "refseq_name": "mitogen-activated protein kinase kinase kinase 17", "gene_name": "MAPKKK17", "gene_names_uniprotkb": "MAPKKK17; T26B15.7", "gene_names_refseq": "MAPKKK17; T26B15.7; T26B15_7; mitogen-activated protein kinase kinase kinase 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80888", "url": "https://www.uniprot.org/uniprotkb/O80888" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80888", "url": "https://www.uniprot.org/uniprotkb/O80888", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEEEEETEEIQKDSRDLDRL", "down_seq": "LWGCYSERIGRLKCVGGLDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80888", "url": "https://www.uniprot.org/uniprotkb/O80888" } ], "site_lbl": "Ser312" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80888-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "O80888-1", "length": 372, "uniprot_id": "M3K17_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 17", "refseq_ac": "NP_180810", "refseq_name": "mitogen-activated protein kinase kinase kinase 17", "gene_name": "MAPKKK17", "gene_names_uniprotkb": "MAPKKK17; T26B15.7", "gene_names_refseq": "MAPKKK17; T26B15.7; T26B15_7; mitogen-activated protein kinase kinase kinase 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80888", "url": "https://www.uniprot.org/uniprotkb/O80888" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80888", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKSSEVHRSEFLQREAKILS", "down_seq": "LSSPYVIGYRGSETKRESNG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80888" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O80888-1.53.53", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80888-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "O80888-1", "length": 372, "uniprot_id": "M3K17_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 17", "refseq_ac": "NP_180810", "refseq_name": "mitogen-activated protein kinase kinase kinase 17", "gene_name": "MAPKKK17", "gene_names_uniprotkb": "MAPKKK17; T26B15.7", "gene_names_refseq": "MAPKKK17; T26B15.7; T26B15_7; mitogen-activated protein kinase kinase kinase 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80888", "url": "https://www.uniprot.org/uniprotkb/O80888" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80888", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSEVHRSEFLQREAKILSSL", "down_seq": "SPYVIGYRGSETKRESNGVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80888", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80888" } ], "site_lbl": "Ser53" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80888-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80902-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "O80902-1", "length": 431, "uniprot_id": "CIPKM_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 22", "refseq_ac": "NP_181383", "refseq_name": "CBL-interacting Serine/Threonine-kinase", "gene_name": "CIPK22", "gene_names_uniprotkb": "CIPK22; PKS14; SnRK3.19; T19C21.2; T6A23.31", "gene_names_refseq": "CBL-interacting protein kinase 22; CIPK22; SNF1-RELATED PROTEIN KINASE 3.19; SnRK3.19; T19C21.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80902", "url": "https://www.uniprot.org/uniprotkb/O80902" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80902", "url": "https://www.uniprot.org/uniprotkb/O80902", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KPENLLLDENRDLKVSDFGL", "down_seq": "AMKEQIHPDGMLHTLCGTPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80902", "url": "https://www.uniprot.org/uniprotkb/O80902" } ], "site_lbl": "Ser172" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O80902-1.186.186", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80902-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "O80902-1", "length": 431, "uniprot_id": "CIPKM_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 22", "refseq_ac": "NP_181383", "refseq_name": "CBL-interacting Serine/Threonine-kinase", "gene_name": "CIPK22", "gene_names_uniprotkb": "CIPK22; PKS14; SnRK3.19; T19C21.2; T6A23.31", "gene_names_refseq": "CBL-interacting protein kinase 22; CIPK22; SNF1-RELATED PROTEIN KINASE 3.19; SnRK3.19; T19C21.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80902", "url": "https://www.uniprot.org/uniprotkb/O80902" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80902", "url": "https://www.uniprot.org/uniprotkb/O80902", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VSDFGLSAMKEQIHPDGMLH", "down_seq": "LCGTPAYVAPELLLKKGYDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O80902", "url": "https://www.uniprot.org/uniprotkb/O80902" } ], "site_lbl": "Thr186" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O80902-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80902-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "O80902-1", "length": 431, "uniprot_id": "CIPKM_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 22", "refseq_ac": "NP_181383", "refseq_name": "CBL-interacting Serine/Threonine-kinase", "gene_name": "CIPK22", "gene_names_uniprotkb": "CIPK22; PKS14; SnRK3.19; T19C21.2; T6A23.31", "gene_names_refseq": "CBL-interacting protein kinase 22; CIPK22; SNF1-RELATED PROTEIN KINASE 3.19; SnRK3.19; T19C21.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80902", "url": "https://www.uniprot.org/uniprotkb/O80902" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80902", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80902", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NGGESVAIKVVQKKRLKDGL", "down_seq": "AHVKREISVMRRLRHPHIVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80902", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80902" } ], "site_lbl": "Thr70" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "70", "end_pos": "70" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80928-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "O80928-1", "length": 330, "uniprot_id": "DOF24_ARATH", "protein_name": "Dof zinc finger protein DOF2.4", "refseq_ac": "NP_181295", "refseq_name": "DNA binding with one finger 2.4", "gene_name": "DOF2.4", "gene_names_uniprotkb": "DOF2.4; F13M22.9; PEAR1", "gene_names_refseq": "ATDOF2.4; DNA binding with one finger 2.4; DOF2.4; F13M22.9; F13M22_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80928", "url": "https://www.uniprot.org/uniprotkb/O80928" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80928" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "O80928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80928", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSLLNYGGLSQDLRSIHMGA", "down_seq": "GGSLMSCVDEWRSASYHQQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80928" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "237", "end_pos": "237" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80939-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AIHSQIAILSGHGIAFVVAP", "down_seq": "ASLPYGNPSQYIGLFNLANN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80939-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLPYGNPSQYIGLFNLANNG", "down_seq": "ETNHVFAVELDTILSTEFND", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn134", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O80939-1.153.153", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80939-1.153.153", "start_pos": 153, "end_pos": 153, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GNETNHVFAVELDTILSTEF", "down_seq": "DTNDNHVGIDINSLKSVQSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn153", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O80939-1.134.134", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80939-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLKSVQSSPAGYWDEKGQFK", "down_seq": "LTLISRKPMQVWVDYDGRTN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn186", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80939-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TDLSIQGITTVTPNGLLKLT", "down_seq": "TTVQKTGHAFYTKPIRFKDS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn57", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80939-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TVQKTGHAFYTKPIRFKDSP", "down_seq": "GTVSSFSTSFVFAIHSQIAI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn79", "evidence": [ { "id": "O80939", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80939#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80939-1.501.501", "start_pos": 501, "end_pos": 501, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGELNGRLGDFGLARLYDHG", "down_seq": "DPQTTHVVGTLGYLAPEHTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser501" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O80939-1.505.505", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80939-1.506.506", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O80939-1.511.511", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80939-1.505.505", "start_pos": 505, "end_pos": 505, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NGRLGDFGLARLYDHGSDPQ", "down_seq": "THVVGTLGYLAPEHTRTGRA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr505" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80939-1.501.501", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80939-1.506.506", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80939-1.511.511", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80939-1.506.506", "start_pos": 506, "end_pos": 506, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GRLGDFGLARLYDHGSDPQT", "down_seq": "HVVGTLGYLAPEHTRTGRAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr506" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O80939-1.501.501", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80939-1.505.505", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80939-1.511.511", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80939-1.511.511", "start_pos": 511, "end_pos": 511, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGLARLYDHGSDPQTTHVVG", "down_seq": "LGYLAPEHTRTGRATMATDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Thr511" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O80939-1.501.501", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80939-1.505.505", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80939-1.506.506", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80939-1.661.661", "start_pos": 661, "end_pos": 661, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VHDGFSELGMSYSSSVFKGF", "down_seq": "GGSSIADSQLSGGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr661" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "O80939-1.672.672", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80939-1.672.672", "start_pos": 672, "end_pos": 672, "uniprot_canonical_ac": "O80939-1", "length": 675, "uniprot_id": "LRK41_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.1", "refseq_ac": "NP_181307", "refseq_name": "receptor lectin kinase", "gene_name": "LECRK41", "gene_names_uniprotkb": "LECRK41; F13M22.21; LECRKE; LRK1", "gene_names_refseq": "F13M22.21; F13M22_21; L-type lectin receptor kinase IV.1; LecRK-IV.1; RLK; receptor lectin kinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80939", "url": "https://www.uniprot.org/uniprotkb/O80939" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YSSSVFKGFTGGSSIADSQL", "down_seq": "GGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80939", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80939" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser672" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "501", "end_pos": "501" }, { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "672", "end_pos": "672" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O80939-1.661.661", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80952-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "O80952-1", "length": 296, "uniprot_id": "PGPS1_ARATH", "protein_name": "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic/mitochondrial", "refseq_ac": "NP_181461", "refseq_name": "phosphatidylglycerolphosphate synthase 1", "gene_name": "PGPS1", "gene_names_uniprotkb": "PGPS1; JOV; PGP1; PGS1; T16B24.7", "gene_names_refseq": "PGP1; PGPS1; PGS1; PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1; T16B24.7; T16B24_7; phosphatidylglycerolphosphate synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80952", "url": "https://www.uniprot.org/uniprotkb/O80952" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The pgp1 mutant locus of Arabidopsis encodes a phosphatidylglycerolphosphate synthase with impaired activity.", "journal": "Plant physiology", "date": "2002-06", "authors": "Xu Changcheng, H\u00e4rtel Heiko, Wada Hajime, Hagio Miki, Yu Bin, Eakin Chris, Benning Christoph", "evidence": [ { "database": "UniProtKB", "id": "O80952", "url": "https://www.uniprot.org/uniprotkb/O80952" } ], "reference": [ { "type": "PubMed", "id": "12068104", "url": "https://glygen.org/publication/PubMed/12068104" } ] } ], "crossref": [ { "id": "O80952", "url": "https://www.uniprot.org/uniprotkb/O80952", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12068104", "url": "https://glygen.org/publication/PubMed/12068104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "LDGYLARKMRLGSAFGAFLD", "down_seq": "VADKLMVAATLILLCTKPIQ", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "In pgp1; reduces activity 5-fold.", "evidence": [ { "database": "UniProtKB", "id": "O80952", "url": "https://www.uniprot.org/uniprotkb/O80952" }, { "database": "PubMed", "id": "12068104", "url": "https://glygen.org/publication/PubMed/12068104" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80961-1.498.498", "start_pos": 498, "end_pos": 498, "uniprot_canonical_ac": "O80961-1", "length": 576, "uniprot_id": "MLO12_ARATH", "protein_name": "MLO-like protein 12", "refseq_ac": "NP_565902", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO12", "gene_names_uniprotkb": "MLO12; T16B24.16", "gene_names_refseq": "ATMLO12; MILDEW RESISTANCE LOCUS O 12; MLO12; T16B24.16; T16B24_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80961", "url": "https://www.uniprot.org/uniprotkb/O80961" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HGMSPVHLLHNYNNRSLDQQ", "down_seq": "SFTASPSPPRFSDYSGQGHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr498" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80961-1.499.499", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80961-1.501.501", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80961-1.503.503", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O80961-1.505.505", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80961-1.499.499", "start_pos": 499, "end_pos": 499, "uniprot_canonical_ac": "O80961-1", "length": 576, "uniprot_id": "MLO12_ARATH", "protein_name": "MLO-like protein 12", "refseq_ac": "NP_565902", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO12", "gene_names_uniprotkb": "MLO12; T16B24.16", "gene_names_refseq": "ATMLO12; MILDEW RESISTANCE LOCUS O 12; MLO12; T16B24.16; T16B24_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80961", "url": "https://www.uniprot.org/uniprotkb/O80961" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GMSPVHLLHNYNNRSLDQQT", "down_seq": "FTASPSPPRFSDYSGQGHGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser499" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80961-1.498.498", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80961-1.501.501", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80961-1.503.503", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80961-1.505.505", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80961-1.501.501", "start_pos": 501, "end_pos": 501, "uniprot_canonical_ac": "O80961-1", "length": 576, "uniprot_id": "MLO12_ARATH", "protein_name": "MLO-like protein 12", "refseq_ac": "NP_565902", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO12", "gene_names_uniprotkb": "MLO12; T16B24.16", "gene_names_refseq": "ATMLO12; MILDEW RESISTANCE LOCUS O 12; MLO12; T16B24.16; T16B24_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80961", "url": "https://www.uniprot.org/uniprotkb/O80961" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPVHLLHNYNNRSLDQQTSF", "down_seq": "ASPSPPRFSDYSGQGHGHQH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Thr501" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80961-1.498.498", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80961-1.499.499", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80961-1.503.503", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80961-1.505.505", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80961-1.503.503", "start_pos": 503, "end_pos": 503, "uniprot_canonical_ac": "O80961-1", "length": 576, "uniprot_id": "MLO12_ARATH", "protein_name": "MLO-like protein 12", "refseq_ac": "NP_565902", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO12", "gene_names_uniprotkb": "MLO12; T16B24.16", "gene_names_refseq": "ATMLO12; MILDEW RESISTANCE LOCUS O 12; MLO12; T16B24.16; T16B24_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80961", "url": "https://www.uniprot.org/uniprotkb/O80961" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VHLLHNYNNRSLDQQTSFTA", "down_seq": "PSPPRFSDYSGQGHGHQHFF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser503" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O80961-1.498.498", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80961-1.499.499", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80961-1.501.501", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80961-1.505.505", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80961-1.505.505", "start_pos": 505, "end_pos": 505, "uniprot_canonical_ac": "O80961-1", "length": 576, "uniprot_id": "MLO12_ARATH", "protein_name": "MLO-like protein 12", "refseq_ac": "NP_565902", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO12", "gene_names_uniprotkb": "MLO12; T16B24.16", "gene_names_refseq": "ATMLO12; MILDEW RESISTANCE LOCUS O 12; MLO12; T16B24.16; T16B24_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80961", "url": "https://www.uniprot.org/uniprotkb/O80961" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "O80961", "url": "https://www.uniprot.org/uniprotkb/O80961", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLHNYNNRSLDQQTSFTASP", "down_seq": "PPRFSDYSGQGHGHQHFFDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80961", "url": "https://www.uniprot.org/uniprotkb/O80961" }, { "database": "iPTMnet", "id": "O80961", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80961" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser505" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O80961-1.498.498", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O80961-1.499.499", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O80961-1.501.501", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80961-1.503.503", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80963-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LYYSGPDYGPVHCWEYSDNT", "down_seq": "FTSGLLWNSSFHNPYIDSLM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn154", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "O80963-1.162.162", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80963-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GPVHCWEYSDNTNFTSGLLW", "down_seq": "SSFHNPYIDSLMFRKIVSGD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn162", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O80963-1.154.154", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80963-1.205.205", "start_pos": 205, "end_pos": 205, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SCGVTKDGDLVCWGPKSNLL", "down_seq": "FSNNEEFEVLASGRNSVCGV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn205", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80963-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NHYCGIREDDHGVECWGRNL", "down_seq": "SSSSSSAPNTSGFVAISSSD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn278", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O80963-1.287.287", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80963-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DHGVECWGRNLNSSSSSSAP", "down_seq": "TSGFVAISSSDSTTCGVREL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn287", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O80963-1.278.278", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80963-1.350.350", "start_pos": 350, "end_pos": 350, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LCSPGMCSPRGNCGDGWFAF", "down_seq": "ASILKESELTSLCSFHNLNI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn350", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80963-1.404.404", "start_pos": 404, "end_pos": 404, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSSTCNPNADRVCTPCSLCQ", "down_seq": "SSCYGICKIRATKSKEHEQK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn404", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80963-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FCAIDASGKQEVICWDRGNT", "down_seq": "RSLNRPPGEISGYSPPMTSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn59", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80963-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "O80963-1", "length": 776, "uniprot_id": "ACCR2_ARATH", "protein_name": "Serine/threonine-protein kinase-like protein CCR2", "refseq_ac": "NP_181451", "refseq_name": "CRINKLY4 related 2", "gene_name": "CCR2", "gene_names_uniprotkb": "CCR2; CRR2; T16B24.18", "gene_names_refseq": "ATCRR2; CCR2; CRINKLY4 related 2; T16B24.18; T16B24_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80963", "url": "https://www.uniprot.org/uniprotkb/O80963", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YSPPMTSLSGGEGFLCAITS", "down_seq": "TSRAFCWNLEDPSENLVPRA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn92", "evidence": [ { "id": "O80963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O80963#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80983-1.681.681", "start_pos": 681, "end_pos": 681, "uniprot_canonical_ac": "O80983-1", "length": 717, "uniprot_id": "FTSH4_ARATH", "protein_name": "ATP-dependent zinc metalloprotease FTSH 4, mitochondrial", "refseq_ac": "NP_565616", "refseq_name": "FTSH protease 4", "gene_name": "FTSH4", "gene_names_uniprotkb": "FTSH4; T19L18.5", "gene_names_refseq": "FTSH protease 4; T19L18.5; T19L18_5; ftsh4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80983", "url": "https://www.uniprot.org/uniprotkb/O80983" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PLLQKRQEVVTKQSNPVPPS", "down_seq": "PSSASSAAAAAAAAAAAAAA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr681", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "681", "end_pos": "681" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80988-1.1008.1008", "start_pos": 1008, "end_pos": 1008, "uniprot_canonical_ac": "O80988-1", "length": 1044, "uniprot_id": "GCSP2_ARATH", "protein_name": "Glycine dehydrogenase (decarboxylating) 2, mitochondrial", "refseq_ac": "NP_180178", "refseq_name": "glycine decarboxylase P-protein 2", "gene_name": "GLDP2", "gene_names_uniprotkb": "GLDP2; GDCSP; GDP2; T19L18.11", "gene_names_refseq": "AtGLDP2; GLDP2; T19L18.11; T19L18_11; glycine decarboxylase P-protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80988", "url": "https://www.uniprot.org/uniprotkb/O80988" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80988", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80988" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80988", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80988", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TWKKPYSREYAAFPAPWLRS", "down_seq": "KFWPTTGRVDNVYGDRNLVC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80988", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80988" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1008" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "47", "end_pos": "47" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80988-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "O80988-1", "length": 1044, "uniprot_id": "GCSP2_ARATH", "protein_name": "Glycine dehydrogenase (decarboxylating) 2, mitochondrial", "refseq_ac": "NP_180178", "refseq_name": "glycine decarboxylase P-protein 2", "gene_name": "GLDP2", "gene_names_uniprotkb": "GLDP2; GDCSP; GDP2; T19L18.11", "gene_names_refseq": "AtGLDP2; GLDP2; T19L18.11; T19L18_11; glycine decarboxylase P-protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80988", "url": "https://www.uniprot.org/uniprotkb/O80988" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80988", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80988" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80988", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80988", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESSLLPTTTVTPSRYVSSVS", "down_seq": "FLHRRRDVSGSAFTTSGRNQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80988", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80988" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "47", "end_pos": "47" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81001-1.477.477", "start_pos": 477, "end_pos": 477, "uniprot_canonical_ac": "O81001-1", "length": 530, "uniprot_id": "GRF1_ARATH", "protein_name": "Growth-regulating factor 1", "refseq_ac": "NP_179869", "refseq_name": "growth-regulating factor 1", "gene_name": "GRF1", "gene_names_uniprotkb": "GRF1; T20K9.5", "gene_names_refseq": "AtGRF1; GRF1; T20K9.5; T20K9_5; growth-regulating factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81001", "url": "https://www.uniprot.org/uniprotkb/O81001" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81001", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81001" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O81001", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81001", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGGPLGEVLNSTTNSPKFGS", "down_seq": "PTGVLQKSTFGSLSNSSSAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81001", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81001" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser477" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "477", "end_pos": "477" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81045-1.174.174", "start_pos": 174, "end_pos": 174, "uniprot_canonical_ac": "O81045-1", "length": 213, "uniprot_id": "P24D8_ARATH", "protein_name": "Transmembrane emp24 domain-containing protein p24delta8", "refseq_ac": "NP_178428", "refseq_name": "emp24/gp25L/p24 family/GOLD family protein", "gene_name": "T18E12.3; T4M8.28", "gene_names_uniprotkb": "T18E12.3; T4M8.28", "gene_names_refseq": "T4M8.28; T4M8_28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ISIHEEMYYLREREEEMQEL", "down_seq": "RSTNSKMAWLSFGSLVVCLS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn174", "evidence": [ { "id": "O81045", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81045#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "174", "end_pos": "174" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "206", "end_pos": "207" }, { "start_pos": "210", "end_pos": "211" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81045-1.97.97", "start_pos": 97, "end_pos": 97, "uniprot_canonical_ac": "O81045-1", "length": 213, "uniprot_id": "P24D8_ARATH", "protein_name": "Transmembrane emp24 domain-containing protein p24delta8", "refseq_ac": "NP_178428", "refseq_name": "emp24/gp25L/p24 family/GOLD family protein", "gene_name": "T18E12.3; T4M8.28", "gene_names_uniprotkb": "T18E12.3; T4M8.28", "gene_names_refseq": "T4M8.28; T4M8_28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KNLHEADKVEAGQFSFTAYE", "down_seq": "GSYVACITAIDYKPETTLTI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn97", "evidence": [ { "id": "O81045", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81045#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "174", "end_pos": "174" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "206", "end_pos": "207" }, { "start_pos": "210", "end_pos": "211" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81045-1.206.207", "start_pos": 206, "end_pos": 207, "uniprot_canonical_ac": "O81045-1", "length": 213, "uniprot_id": "P24D8_ARATH", "protein_name": "Transmembrane emp24 domain-containing protein p24delta8", "refseq_ac": "NP_178428", "refseq_name": "emp24/gp25L/p24 family/GOLD family protein", "gene_name": "T18E12.3; T4M8.28", "gene_names_uniprotkb": "T18E12.3; T4M8.28", "gene_names_refseq": "T4M8.28; T4M8_28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sorting signals in the cytosolic tail of membrane proteins involved in the interaction with plant ARF1 and coatomer.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-05", "authors": "Contreras Inmaculada, Ortiz-Zapater Elena, Aniento Fernando", "evidence": [ { "database": "UniProtKB", "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045" } ], "reference": [ { "type": "PubMed", "id": "15125774", "url": "https://glygen.org/publication/PubMed/15125774" } ] } ], "crossref": [ { "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15125774", "url": "https://glygen.org/publication/PubMed/15125774", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "FF", "start_aa": "F", "up_seq": "FGSLVVCLSVAGLQFWHLKT", "down_seq": "EKKKLI", "mutagenesis": [ { "sequence_org": "FF", "sequence_mut": "AA", "comment": "Slightly reduces association with COPI vesicle coat and interaction with ARF1.", "evidence": [ { "database": "UniProtKB", "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045" }, { "database": "PubMed", "id": "15125774", "url": "https://glygen.org/publication/PubMed/15125774" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "174", "end_pos": "174" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "206", "end_pos": "207" }, { "start_pos": "210", "end_pos": "211" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O81045-1.210.211", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81045-1.210.211", "start_pos": 210, "end_pos": 211, "uniprot_canonical_ac": "O81045-1", "length": 213, "uniprot_id": "P24D8_ARATH", "protein_name": "Transmembrane emp24 domain-containing protein p24delta8", "refseq_ac": "NP_178428", "refseq_name": "emp24/gp25L/p24 family/GOLD family protein", "gene_name": "T18E12.3; T4M8.28", "gene_names_uniprotkb": "T18E12.3; T4M8.28", "gene_names_refseq": "T4M8.28; T4M8_28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sorting signals in the cytosolic tail of membrane proteins involved in the interaction with plant ARF1 and coatomer.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-05", "authors": "Contreras Inmaculada, Ortiz-Zapater Elena, Aniento Fernando", "evidence": [ { "database": "UniProtKB", "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045" } ], "reference": [ { "type": "PubMed", "id": "15125774", "url": "https://glygen.org/publication/PubMed/15125774" } ] } ], "crossref": [ { "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15125774", "url": "https://glygen.org/publication/PubMed/15125774", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "KK", "start_aa": "K", "up_seq": "VVCLSVAGLQFWHLKTFFEK", "down_seq": "LI", "mutagenesis": [ { "sequence_org": "KK", "sequence_mut": "SS", "comment": "Disrupts association with COPI vesicle coat and interaction with ARF1.", "evidence": [ { "database": "UniProtKB", "id": "O81045", "url": "https://www.uniprot.org/uniprotkb/O81045" }, { "database": "PubMed", "id": "15125774", "url": "https://glygen.org/publication/PubMed/15125774" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "174", "end_pos": "174" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "206", "end_pos": "207" }, { "start_pos": "210", "end_pos": "211" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O81045-1.206.207", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81108-1.1011.1011", "start_pos": 1011, "end_pos": 1011, "uniprot_canonical_ac": "O81108-1", "length": 1014, "uniprot_id": "ACA2_ARATH", "protein_name": "Calcium-transporting ATPase 2, plasma membrane-type", "refseq_ac": "NP_195479", "refseq_name": "calcium ATPase 2", "gene_name": "ACA2", "gene_names_uniprotkb": "ACA2; F19F18.130", "gene_names_refseq": "ACA2; CALCIUM ATPASE 2; F19F18.130; F19F18_130; calcium ATPase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81108", "url": "https://www.uniprot.org/uniprotkb/O81108" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QWIFSIFIGFLGMPIAAGLK", "down_seq": "IPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr1011" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1011", "end_pos": "1011" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81108-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "O81108-1", "length": 1014, "uniprot_id": "ACA2_ARATH", "protein_name": "Calcium-transporting ATPase 2, plasma membrane-type", "refseq_ac": "NP_195479", "refseq_name": "calcium ATPase 2", "gene_name": "ACA2", "gene_names_uniprotkb": "ACA2; F19F18.130", "gene_names_refseq": "ACA2; CALCIUM ATPASE 2; F19F18.130; F19F18_130; calcium ATPase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81108", "url": "https://www.uniprot.org/uniprotkb/O81108" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] }, { "title": "A calcium-dependent protein kinase can inhibit a calmodulin-stimulated Ca2+ pump (ACA2) located in the endoplasmic reticulum of Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000-05-23", "authors": "Hwang I, Sze H, Harper J F", "evidence": [ { "database": "UniProtKB", "id": "O81108", "url": "https://www.uniprot.org/uniprotkb/O81108" }, { "database": "iPTMnet", "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108" } ], "reference": [ { "type": "PubMed", "id": "10823962", "url": "https://glygen.org/publication/PubMed/10823962" } ] } ], "crossref": [ { "id": "O81108", "url": "https://www.uniprot.org/uniprotkb/O81108", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10823962", "url": "https://glygen.org/publication/PubMed/10823962", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNLCGVVKNPKRRFRFTANL", "down_seq": "KRYEAAAMRRTNQEKLRIAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CPK1", "evidence": [ { "database": "UniProtKB", "id": "O81108", "url": "https://www.uniprot.org/uniprotkb/O81108" }, { "database": "iPTMnet", "id": "O81108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81108" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "PubMed", "id": "10823962", "url": "https://glygen.org/publication/PubMed/10823962" } ], "site_lbl": "Ser45" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1011", "end_pos": "1011" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.101.101", "start_pos": 101, "end_pos": 101, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains.", "journal": "Plant physiology", "date": "2010-05", "authors": "Rausin Glwadys, Tillemans Vinciane, Stankovic Nancy, Hanikenne Marc, Motte Patrick", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "reference": [ { "type": "PubMed", "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "GGDRGGGGGGRGGRGGSDLK", "down_seq": "YECGETGHFARECRNRGGTG", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "No effect on cellular localization.", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "PubMed", "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O81126-1.104.104", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81126-1.109.109", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81126-1.114.114", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains.", "journal": "Plant physiology", "date": "2010-05", "authors": "Rausin Glwadys, Tillemans Vinciane, Stankovic Nancy, Hanikenne Marc, Motte Patrick", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "reference": [ { "type": "PubMed", "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "RGGGGGGRGGRGGSDLKCYE", "down_seq": "GETGHFARECRNRGGTGRRR", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "No effect on cellular localization.", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "PubMed", "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O81126-1.101.101", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81126-1.109.109", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81126-1.114.114", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains.", "journal": "Plant physiology", "date": "2010-05", "authors": "Rausin Glwadys, Tillemans Vinciane, Stankovic Nancy, Hanikenne Marc, Motte Patrick", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "reference": [ { "type": "PubMed", "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "GGRGGRGGSDLKCYECGETG", "down_seq": "FARECRNRGGTGRRRSKSRS", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "S", "comment": "No effect on cellular localization.", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "PubMed", "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O81126-1.101.101", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81126-1.104.104", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81126-1.114.114", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains.", "journal": "Plant physiology", "date": "2010-05", "authors": "Rausin Glwadys, Tillemans Vinciane, Stankovic Nancy, Hanikenne Marc, Motte Patrick", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "reference": [ { "type": "PubMed", "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "RGGSDLKCYECGETGHFARE", "down_seq": "RNRGGTGRRRSKSRSRTPPR", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "No effect on cellular localization.", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "PubMed", "id": "20237019", "url": "https://glygen.org/publication/PubMed/20237019" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O81126-1.101.101", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O81126-1.104.104", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81126-1.109.109", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGTGRRRSKSRSRTPPRYRR", "down_seq": "PSYGRRSYSPRARSPPPPRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser138" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O81126-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81126-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81126-1.152.152", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.140.140", "start_pos": 140, "end_pos": 140, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGRRRSKSRSRTPPRYRRSP", "down_seq": "YGRRSYSPRARSPPPPRRRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser140" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81126-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81126-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81126-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRSRTPPRYRRSPSYGRRSY", "down_seq": "PRARSPPPPRRRSPSPPPAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "site_lbl": "Ser147" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O81126-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O81126-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81126-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O81126-1.162.162", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81126-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPRYRRSPSYGRRSYSPRAR", "down_seq": "PPPPRRRSPSPPPARGRSYS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser152" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O81126-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81126-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81126-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81126-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81126-1.170.170", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O81126-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81126-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYGRRSYSPRARSPPPPRRR", "down_seq": "PSPPPARGRSYSRSPPPYRA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser160" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81126-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O81126-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81126-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81126-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81126-1.170.170", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81126-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81126-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81126-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81126-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRRSYSPRARSPPPPRRRSP", "down_seq": "PPPARGRSYSRSPPPYRARE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser162" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81126-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O81126-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81126-1.170.170", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81126-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81126-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81126-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81126-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARSPPPPRRRSPSPPPARGR", "down_seq": "YSRSPPPYRAREEVPYANGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser170" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O81126-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81126-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81126-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81126-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81126-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81126-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RSPPPPRRRSPSPPPARGRS", "down_seq": "SRSPPPYRAREEVPYANGNG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr171" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O81126-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O81126-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81126-1.170.170", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81126-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O81126-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81126-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPPPPRRRSPSPPPARGRSY", "down_seq": "RSPPPYRAREEVPYANGNGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser172" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81126-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O81126-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81126-1.170.170", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81126-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81126-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81126-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.174.174", "start_pos": 174, "end_pos": 174, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPPRRRSPSPPPARGRSYSR", "down_seq": "PPPYRAREEVPYANGNGLKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" }, { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser174" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81126-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81126-1.170.170", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O81126-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81126-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81126-1.178.178", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RRSPSPPPARGRSYSRSPPP", "down_seq": "RAREEVPYANGNGLKERRRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81126", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81126" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Tyr178" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O81126-1.160.160", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O81126-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81126-1.170.170", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O81126-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O81126-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81126-1.174.174", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81126-1.200.200", "start_pos": 200, "end_pos": 200, "uniprot_canonical_ac": "O81126-1", "length": 200, "uniprot_id": "RSZ22_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ22", "refseq_ac": "NP_001078474", "refseq_name": "serine/arginine-rich 22", "gene_name": "RSZ22", "gene_names_uniprotkb": "RSZ22; F28M20.230; RSZP22; SRZ22", "gene_names_refseq": "At-RSZ22; AtRSZ22; F28M20.230; F28M20_230; RS-CONTAINING ZINC FINGER PROTEIN 22; RS-containing zinc finger protein 22; RSZ22; RSZP22; SRZ-22; SRZ22; serine/arginine-rich 22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AREEVPYANGNGLKERRRSR", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81126", "url": "https://www.uniprot.org/uniprotkb/O81126" } ], "site_lbl": "Ser200" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "114", "end_pos": "114" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "200", "end_pos": "200" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81127-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" }, { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YARRSISPRGRRSPPRRRSV", "down_seq": "PPRRGRSYSRSPPYRGSRRD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr148", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr148" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81127-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O81127-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81127-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81127-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81127-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81127-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81127-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81127-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" }, { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.", "journal": "Journal of proteomics", "date": "2009-07-21", "authors": "Wang Zenglan, Dong Gaofeng, Singh Sasha, Steen Hanno, Li Jiaxu", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ECRRGRGSVRRRSPSPRRRR", "down_seq": "PDYGYARRSISPRGRRSPPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser123" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O81127-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81127-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O81127-1.140.140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 16 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81127-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRRSPSPRRRRSPDYGYARR", "down_seq": "ISPRGRRSPPRRRSVTPPRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "site_lbl": "Ser132" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O81127-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81127-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81127-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81127-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81127-1.148.148", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81127-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSPSPRRRRSPDYGYARRSI", "down_seq": "PRGRRSPPRRRSVTPPRRGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "site_lbl": "Ser134" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O81127-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81127-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81127-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81127-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81127-1.148.148", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81127-1.140.140", "start_pos": 140, "end_pos": 140, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRRSPDYGYARRSISPRGRR", "down_seq": "PPRRRSVTPPRRGRSYSRSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "site_lbl": "Ser140" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O81127-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81127-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O81127-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81127-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81127-1.148.148", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O81127-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O81127-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O81127-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81127-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" }, { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YGYARRSISPRGRRSPPRRR", "down_seq": "VTPPRRGRSYSRSPPYRGSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" }, { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser146" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O81127-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81127-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O81127-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81127-1.148.148", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81127-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81127-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81127-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81127-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRGRRSPPRRRSVTPPRRGR", "down_seq": "YSRSPPYRGSRRDSPRRRDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser155" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81127-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O81127-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O81127-1.148.148", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81127-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81127-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81127-1.175.175", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81127-1.157.157", "start_pos": 157, "end_pos": 157, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRRSPPRRRSVTPPRRGRSY", "down_seq": "RSPPYRGSRRDSPRRRDSPY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser157" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O81127-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81127-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O81127-1.148.148", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81127-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81127-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81127-1.175.175", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81127-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSPPRRRSVTPPRRGRSYSR", "down_seq": "PPYRGSRRDSPRRRDSPYGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" }, { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser159" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O81127-1.140.140", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O81127-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81127-1.148.148", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81127-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81127-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81127-1.175.175", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81127-1.175.175", "start_pos": 175, "end_pos": 175, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYSRSPPYRGSRRDSPRRRD", "down_seq": "PYGRRSPYANGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser175" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81127-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O81127-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O81127-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81127-1.181.181", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81127-1.181.181", "start_pos": 181, "end_pos": 181, "uniprot_canonical_ac": "O81127-1", "length": 187, "uniprot_id": "RSZ21_ARATH", "protein_name": "Serine/arginine-rich splicing factor RSZ21", "refseq_ac": "NP_001117342", "refseq_name": "RS-containing zinc finger protein 21", "gene_name": "RSZ21", "gene_names_uniprotkb": "RSZ21; RSZP21; SRZ21; T23E23.2", "gene_names_refseq": "At-RSZ21; RS-containing zinc finger protein 21; RSZ21; RSZP21; SRZ-21; SRZ21; T23E23.2; T23E23_2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PYRGSRRDSPRRRDSPYGRR", "down_seq": "PYANGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81127", "url": "https://www.uniprot.org/uniprotkb/O81127" }, { "database": "iPTMnet", "id": "O81127", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81127" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser181" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "148", "end_pos": "148" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O81127-1.175.175", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81148-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "O81148-1", "length": 250, "uniprot_id": "PSA4A_ARATH", "protein_name": "Proteasome subunit alpha type-4-A", "refseq_ac": "NP_188850", "refseq_name": "20S proteasome alpha subunit C1", "gene_name": "PAC1", "gene_names_uniprotkb": "PAC1; MKA23.2; PRC9; PRS1", "gene_names_refseq": "20S PROTEASOME SUBUNIT PAC1; 20S proteasome alpha subunit C1; PAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81148", "url": "https://www.uniprot.org/uniprotkb/O81148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KTMDSTSLTSEKLELAEVYL", "down_seq": "PSKTVKYHVHSPESLTKLLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr218" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O81148-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81148-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81148-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81148-1.234.234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81148-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "O81148-1", "length": 250, "uniprot_id": "PSA4A_ARATH", "protein_name": "Proteasome subunit alpha type-4-A", "refseq_ac": "NP_188850", "refseq_name": "20S proteasome alpha subunit C1", "gene_name": "PAC1", "gene_names_uniprotkb": "PAC1; MKA23.2; PRC9; PRS1", "gene_names_refseq": "20S PROTEASOME SUBUNIT PAC1; 20S proteasome alpha subunit C1; PAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81148", "url": "https://www.uniprot.org/uniprotkb/O81148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDSTSLTSEKLELAEVYLTP", "down_seq": "KTVKYHVHSPESLTKLLVKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81148-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81148-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81148-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81148-1.234.234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81148-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "O81148-1", "length": 250, "uniprot_id": "PSA4A_ARATH", "protein_name": "Proteasome subunit alpha type-4-A", "refseq_ac": "NP_188850", "refseq_name": "20S proteasome alpha subunit C1", "gene_name": "PAC1", "gene_names_uniprotkb": "PAC1; MKA23.2; PRC9; PRS1", "gene_names_refseq": "20S PROTEASOME SUBUNIT PAC1; 20S proteasome alpha subunit C1; PAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81148", "url": "https://www.uniprot.org/uniprotkb/O81148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLELAEVYLTPSKTVKYHVH", "down_seq": "PESLTKLLVKHGVTQPAAET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O81148-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O81148-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O81148-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81148-1.234.234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81148-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "O81148-1", "length": 250, "uniprot_id": "PSA4A_ARATH", "protein_name": "Proteasome subunit alpha type-4-A", "refseq_ac": "NP_188850", "refseq_name": "20S proteasome alpha subunit C1", "gene_name": "PAC1", "gene_names_uniprotkb": "PAC1; MKA23.2; PRC9; PRS1", "gene_names_refseq": "20S PROTEASOME SUBUNIT PAC1; 20S proteasome alpha subunit C1; PAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81148", "url": "https://www.uniprot.org/uniprotkb/O81148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAEVYLTPSKTVKYHVHSPE", "down_seq": "LTKLLVKHGVTQPAAETS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O81148-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81148-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O81148-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81148-1.234.234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81148-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "O81148-1", "length": 250, "uniprot_id": "PSA4A_ARATH", "protein_name": "Proteasome subunit alpha type-4-A", "refseq_ac": "NP_188850", "refseq_name": "20S proteasome alpha subunit C1", "gene_name": "PAC1", "gene_names_uniprotkb": "PAC1; MKA23.2; PRC9; PRS1", "gene_names_refseq": "20S PROTEASOME SUBUNIT PAC1; 20S proteasome alpha subunit C1; PAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81148", "url": "https://www.uniprot.org/uniprotkb/O81148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EVYLTPSKTVKYHVHSPESL", "down_seq": "KLLVKHGVTQPAAETS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr234" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81148-1.218.218", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O81148-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81148-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81148-1.232.232", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81148-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "O81148-1", "length": 250, "uniprot_id": "PSA4A_ARATH", "protein_name": "Proteasome subunit alpha type-4-A", "refseq_ac": "NP_188850", "refseq_name": "20S proteasome alpha subunit C1", "gene_name": "PAC1", "gene_names_uniprotkb": "PAC1; MKA23.2; PRC9; PRS1", "gene_names_refseq": "20S PROTEASOME SUBUNIT PAC1; 20S proteasome alpha subunit C1; PAC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81148", "url": "https://www.uniprot.org/uniprotkb/O81148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPEGRLYQVEYAMEAIGNAG", "down_seq": "AIGILSKDGVVLIGEKKVTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81148", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81148" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81149-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "O81149-1", "length": 237, "uniprot_id": "PSA5A_ARATH", "protein_name": "Proteasome subunit alpha type-5-A", "refseq_ac": "NP_001077717", "refseq_name": "20S proteasome alpha subunit E1", "gene_name": "PAE1", "gene_names_uniprotkb": "PAE1; T18A20.8", "gene_names_refseq": "20S PROTEASOME SUBUNIT PAE1; 20S proteasome alpha subunit E1; ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1; ATPAE1; PAE1; T18A20.8; T18A20_8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81149", "url": "https://www.uniprot.org/uniprotkb/O81149" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81149", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81149" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81149", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81149" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O81149", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81149", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MFLTRTEYDRGVNTF", "down_seq": "PEGRLFQVEYAIEAIKLGST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81149", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81149" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81208-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "O81208-1", "length": 110, "uniprot_id": "OHP1_ARATH", "protein_name": "Light-harvesting complex-like protein OHP1, chloroplastic", "refseq_ac": "NP_195832", "refseq_name": "one helix protein", "gene_name": "OHP1", "gene_names_uniprotkb": "OHP1; APG16; HLIP; LIL2; OHP; PDE335; T7H20.170", "gene_names_refseq": "OHP; PDE335; PIGMENT DEFECTIVE 335; T7H20.170; T7H20_170; one helix protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ONE-HELIX PROTEIN1 and 2 Form Heterodimers to Bind Chlorophyll in Photosystem II Biogenesis.", "journal": "Plant physiology", "date": "2020-05", "authors": "Hey Daniel, Grimm Bernhard", "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" } ], "reference": [ { "type": "PubMed", "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152" } ] } ], "crossref": [ { "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "IVPKAQPKSQPAFLGFTQTA", "down_seq": "IWNSRACMIGLIGTFIVELI", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Abolishes chlorophyll binding of OHP1 and OHP2 heterodimer; when associated with A-72 and A-74.", "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" }, { "database": "PubMed", "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "69", "end_pos": "69" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O81208-1.72.72", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81208-1.74.74", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81208-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "O81208-1", "length": 110, "uniprot_id": "OHP1_ARATH", "protein_name": "Light-harvesting complex-like protein OHP1, chloroplastic", "refseq_ac": "NP_195832", "refseq_name": "one helix protein", "gene_name": "OHP1", "gene_names_uniprotkb": "OHP1; APG16; HLIP; LIL2; OHP; PDE335; T7H20.170", "gene_names_refseq": "OHP; PDE335; PIGMENT DEFECTIVE 335; T7H20.170; T7H20_170; one helix protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ONE-HELIX PROTEIN1 and 2 Form Heterodimers to Bind Chlorophyll in Photosystem II Biogenesis.", "journal": "Plant physiology", "date": "2020-05", "authors": "Hey Daniel, Grimm Bernhard", "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" } ], "reference": [ { "type": "PubMed", "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152" } ] } ], "crossref": [ { "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KAQPKSQPAFLGFTQTAEIW", "down_seq": "SRACMIGLIGTFIVELILNK", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "A", "comment": "Abolishes chlorophyll binding of OHP1 and OHP2 heterodimer; when associated with A-69 and A-74.", "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" }, { "database": "PubMed", "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "69", "end_pos": "69" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O81208-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81208-1.74.74", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81208-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "O81208-1", "length": 110, "uniprot_id": "OHP1_ARATH", "protein_name": "Light-harvesting complex-like protein OHP1, chloroplastic", "refseq_ac": "NP_195832", "refseq_name": "one helix protein", "gene_name": "OHP1", "gene_names_uniprotkb": "OHP1; APG16; HLIP; LIL2; OHP; PDE335; T7H20.170", "gene_names_refseq": "OHP; PDE335; PIGMENT DEFECTIVE 335; T7H20.170; T7H20_170; one helix protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ONE-HELIX PROTEIN1 and 2 Form Heterodimers to Bind Chlorophyll in Photosystem II Biogenesis.", "journal": "Plant physiology", "date": "2020-05", "authors": "Hey Daniel, Grimm Bernhard", "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" } ], "reference": [ { "type": "PubMed", "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152" } ] } ], "crossref": [ { "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "QPKSQPAFLGFTQTAEIWNS", "down_seq": "ACMIGLIGTFIVELILNKGI", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Abolishes chlorophyll binding of OHP1 and OHP2 heterodimer; when associated with A-69 and A-72.", "evidence": [ { "database": "UniProtKB", "id": "O81208", "url": "https://www.uniprot.org/uniprotkb/O81208" }, { "database": "PubMed", "id": "32071152", "url": "https://glygen.org/publication/PubMed/32071152" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "69", "end_pos": "69" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O81208-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81208-1.72.72", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81210-1.728.728", "start_pos": 728, "end_pos": 728, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PAQDYKKYEVVLLVGLGIGA", "down_seq": "PMISIVKDIVNNIKAKEQAQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr728", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81210-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTLLKRNRLEKKTTVVKRLA", "down_seq": "VSHELKRLTSVSGGIGGRKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser105" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81210-1.136.136", "start_pos": 136, "end_pos": 136, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSGGIGGRKPPRPAKLDRTK", "down_seq": "AASQALKGLKFISKTDGGAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser136" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81210-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFEVSGGYHSDAEAGNSGPM", "down_seq": "GGQLPPIYKKPGNSRFTAEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81210-1.318.318", "start_pos": 318, "end_pos": 318, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLLQAATQSVITSTGERKNL", "down_seq": "HMMSQRLKPTFNRNPLKRWY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "site_lbl": "Ser318" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O81210-1.322.322", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81210-1.322.322", "start_pos": 322, "end_pos": 322, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AATQSVITSTGERKNLSHMM", "down_seq": "QRLKPTFNRNPLKRWYRGLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "site_lbl": "Ser322" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O81210-1.318.318", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81210-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDDTVSVHSLKMEGGSSVEE", "down_seq": "PELTLLKRNRLEKKTTVVKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" } ], "site_lbl": "Ser82" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81210-1.873.873", "start_pos": 873, "end_pos": 873, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "WRNVYKRIAMDHPNTKVGVF", "down_seq": "CGAPALTKELRHLALDFTHK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Tyr873" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O81210-1.880.880", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81210-1.880.880", "start_pos": 880, "end_pos": 880, "uniprot_canonical_ac": "O81210-1", "length": 905, "uniprot_id": "RBOHC_ARATH", "protein_name": "Respiratory burst oxidase homolog protein C", "refseq_ac": "NP_199919", "refseq_name": "NADPH/respiratory burst oxidase protein D", "gene_name": "RBOHC", "gene_names_uniprotkb": "RBOHC; K3K7.25; RHD2", "gene_names_refseq": "A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C; ATRBOHC; K3K7.25; K3K7_25; RBOHC; RESPIRATORY BURST OXIDASE HOMOLOG C; RHD2; ROOT HAIR DEFECTIVE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81210", "url": "https://www.uniprot.org/uniprotkb/O81210" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IAMDHPNTKVGVFYCGAPAL", "down_seq": "KELRHLALDFTHKTSTRFSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81210", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81210" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr880" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "728", "end_pos": "728" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "880", "end_pos": "880" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O81210-1.873.873", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81242-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "O81242-1", "length": 355, "uniprot_id": "RHL1_ARATH", "protein_name": "DNA-binding protein RHL1", "refseq_ac": "NP_001117449", "refseq_name": "root hair initiation protein root hairless 1 (RHL1)", "gene_name": "RHL1", "gene_names_uniprotkb": "RHL1; F11A17.7; HYP7", "gene_names_refseq": "F11A17.7; F11A17_7; HYP7; HYPOCOTYL 7; RHL1; ROOT HAIRLESS 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81242", "url": "https://www.uniprot.org/uniprotkb/O81242" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "RHL1 is an essential component of the plant DNA topoisomerase VI complex and is required for ploidy-dependent cell growth.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005-12-20", "authors": "Sugimoto-Shirasu Keiko, Roberts Gethin R, Stacey Nicola J, McCann Maureen C, Maxwell Anthony, Roberts Keith", "evidence": [ { "database": "UniProtKB", "id": "O81242", "url": "https://www.uniprot.org/uniprotkb/O81242" } ], "reference": [ { "type": "PubMed", "id": "16339310", "url": "https://glygen.org/publication/PubMed/16339310" } ] } ], "crossref": [ { "id": "O81242", "url": "https://www.uniprot.org/uniprotkb/O81242", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16339310", "url": "https://glygen.org/publication/PubMed/16339310", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "HGTDIIRKSQRKNRFLFSFP", "down_seq": "LLAPISAATIGDLDRLSTKN", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In hyp7/rhl1-2; dwarf and reduced ploidy phenotype, but DNA binding only slightly reduced.", "evidence": [ { "database": "UniProtKB", "id": "O81242", "url": "https://www.uniprot.org/uniprotkb/O81242" }, { "database": "PubMed", "id": "16339310", "url": "https://glygen.org/publication/PubMed/16339310" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81242-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "O81242-1", "length": 355, "uniprot_id": "RHL1_ARATH", "protein_name": "DNA-binding protein RHL1", "refseq_ac": "NP_001117449", "refseq_name": "root hair initiation protein root hairless 1 (RHL1)", "gene_name": "RHL1", "gene_names_uniprotkb": "RHL1; F11A17.7; HYP7", "gene_names_refseq": "F11A17.7; F11A17_7; HYP7; HYPOCOTYL 7; RHL1; ROOT HAIRLESS 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81242", "url": "https://www.uniprot.org/uniprotkb/O81242" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81242" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81242", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDEDEKPLLEPESSTRSREE", "down_seq": "QDGNGITASASKLPEELPAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81242", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81242" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser296" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.864.864", "start_pos": 864, "end_pos": 864, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The targeting of the atToc159 preprotein receptor to the chloroplast outer membrane is mediated by its GTPase domain and is regulated by GTP.", "journal": "The Journal of cell biology", "date": "2002-12-09", "authors": "Smith Matthew D, Hiltbrunner Andreas, Kessler Felix, Schnell Danny J", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "reference": [ { "type": "PubMed", "id": "12473690", "url": "https://glygen.org/publication/PubMed/12473690" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12473690", "url": "https://glygen.org/publication/PubMed/12473690", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "SEAEGNEELIFSLNILVLGK", "down_seq": "GVGKSATINSILGNQIASID", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "R", "comment": "Reduced GTPase activity and impaired chloroplast outer membrane anchoring.", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "12473690", "url": "https://glygen.org/publication/PubMed/12473690" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O81283-1.868.868", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.868.868", "start_pos": 868, "end_pos": 868, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The roles of toc34 and toc75 in targeting the toc159 preprotein receptor to chloroplasts.", "journal": "The Journal of biological chemistry", "date": "2003-11-07", "authors": "Wallas Tanya R, Smith Matthew D, Sanchez-Nieto Sobeida, Schnell Danny J", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "reference": [ { "type": "PubMed", "id": "12951325", "url": "https://glygen.org/publication/PubMed/12951325" } ] }, { "title": "The targeting of the atToc159 preprotein receptor to the chloroplast outer membrane is mediated by its GTPase domain and is regulated by GTP.", "journal": "The Journal of cell biology", "date": "2002-12-09", "authors": "Smith Matthew D, Hiltbrunner Andreas, Kessler Felix, Schnell Danny J", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "reference": [ { "type": "PubMed", "id": "12473690", "url": "https://glygen.org/publication/PubMed/12473690" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12951325", "url": "https://glygen.org/publication/PubMed/12951325", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12473690", "url": "https://glygen.org/publication/PubMed/12473690", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "GNEELIFSLNILVLGKAGVG", "down_seq": "SATINSILGNQIASIDAFGL", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of GTPase activity and impaired chloroplast outer membrane anchoring.", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "12951325", "url": "https://glygen.org/publication/PubMed/12951325" }, { "database": "PubMed", "id": "12473690", "url": "https://glygen.org/publication/PubMed/12473690" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O81283-1.864.864", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.122.122", "start_pos": 122, "end_pos": 122, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EATPKPEVVSGETIGVDDVS", "down_seq": "LSPKPEAVSDGVGVVEENKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser122" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.1464.1464", "start_pos": 1464, "end_pos": 1464, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GRNSKIALRAGLNNKMSGQI", "down_seq": "VRTSSSDQLQIALTAILPIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "site_lbl": "Thr1464" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81283-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVKEDVEDIKDDGESKIENG", "down_seq": "VDVDVKQASTDGESESKVKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser162" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O81283-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81283-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81283-1.176.176", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDDGESKIENGSVDVDVKQA", "down_seq": "TDGESESKVKDVEEEDVGTK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser171" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O81283-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81283-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81283-1.176.176", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DDGESKIENGSVDVDVKQAS", "down_seq": "DGESESKVKDVEEEDVGTKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr172" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O81283-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81283-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81283-1.176.176", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKIENGSVDVDVKQASTDGE", "down_seq": "ESKVKDVEEEDVGTKKDDEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser176" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O81283-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81283-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81283-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.210.210", "start_pos": 210, "end_pos": 210, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TKKDDEGESELGGKVDVDDK", "down_seq": "DNVIEEEGVELTDKGDVIVN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser210" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDSKSVTPEPTNPFYASSGQ", "down_seq": "GKTYASVVAAAAAAAADKED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.231.231", "start_pos": 231, "end_pos": 231, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DNVIEEEGVELTDKGDVIVN", "down_seq": "SPVESVHVDVAKPGVVVVGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser231" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.266.266", "start_pos": 266, "end_pos": 266, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VVVVGDAEGSEELKINADAE", "down_seq": "LEVANKFDQIGDDDSGEFEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr266" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "O81283-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NADAETLEVANKFDQIGDDD", "down_seq": "GEFEPVSDKAIEEVEEKFTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser281" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81283-1.266.266", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81283-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O81283-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81283-1.301.301", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVANKFDQIGDDDSGEFEPV", "down_seq": "DKAIEEVEEKFTSESDSIAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser288" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O81283-1.281.281", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81283-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81283-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O81283-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O81283-1.305.305", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.300.300", "start_pos": 300, "end_pos": 300, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DSGEFEPVSDKAIEEVEEKF", "down_seq": "SESDSIADSSKLESVDTSAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr300" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O81283-1.281.281", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81283-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81283-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O81283-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81283-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81283-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81283-1.310.310", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGEFEPVSDKAIEEVEEKFT", "down_seq": "ESDSIADSSKLESVDTSAVE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser301" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81283-1.281.281", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O81283-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81283-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81283-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81283-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81283-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81283-1.310.310", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.303.303", "start_pos": 303, "end_pos": 303, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EFEPVSDKAIEEVEEKFTSE", "down_seq": "DSIADSSKLESVDTSAVEPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser303" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81283-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O81283-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81283-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81283-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81283-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81283-1.310.310", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.305.305", "start_pos": 305, "end_pos": 305, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPVSDKAIEEVEEKFTSESD", "down_seq": "IADSSKLESVDTSAVEPEVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser305" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O81283-1.288.288", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81283-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81283-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81283-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81283-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81283-1.310.310", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKAIEEVEEKFTSESDSIAD", "down_seq": "SKLESVDTSAVEPEVVAAES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser309" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O81283-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81283-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O81283-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81283-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81283-1.310.310", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.310.310", "start_pos": 310, "end_pos": 310, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KAIEEVEEKFTSESDSIADS", "down_seq": "KLESVDTSAVEPEVVAAESG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser310" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O81283-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O81283-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O81283-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81283-1.305.305", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81283-1.309.309", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.448.448", "start_pos": 448, "end_pos": 448, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVHNKFDPIGQGEGGEVELE", "down_seq": "DKATEEGGGKLVSEGDSMVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser448" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O81283-1.452.452", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81283-1.461.461", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.452.452", "start_pos": 452, "end_pos": 452, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KFDPIGQGEGGEVELESDKA", "down_seq": "EEGGGKLVSEGDSMVDSSVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr452" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O81283-1.448.448", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81283-1.461.461", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.461.461", "start_pos": 461, "end_pos": 461, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGEVELESDKATEEGGGKLV", "down_seq": "EGDSMVDSSVVDSVDADINV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "site_lbl": "Ser461" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O81283-1.448.448", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O81283-1.452.452", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81283-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAAAADKEDGGAVSSAKELD", "down_seq": "SSEAVSGNSDKVGADDLSDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser53" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O81283-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81283-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81283-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81283-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81283-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81283-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAAADKEDGGAVSSAKELDS", "down_seq": "SEAVSGNSDKVGADDLSDSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O81283-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81283-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81283-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81283-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O81283-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O81283-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.557.557", "start_pos": 557, "end_pos": 557, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAKVEPDEPKVGVEVEELPV", "down_seq": "ESLKVGSVDAEEDSIPAAES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Ser557" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O81283-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81283-1.564.564", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.559.559", "start_pos": 559, "end_pos": 559, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVEPDEPKVGVEVEELPVSE", "down_seq": "LKVGSVDAEEDSIPAAESQF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser559" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81283-1.557.557", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81283-1.564.564", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAADKEDGGAVSSAKELDSS", "down_seq": "EAVSGNSDKVGADDLSDSEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser55" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81283-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81283-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81283-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81283-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81283-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81283-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.564.564", "start_pos": 564, "end_pos": 564, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPKVGVEVEELPVSESLKVG", "down_seq": "VDAEEDSIPAAESQFEVRKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser564" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O81283-1.557.557", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81283-1.559.559", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.589.589", "start_pos": 589, "end_pos": 589, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDSIPAAESQFEVRKVVEGD", "down_seq": "AEEDENKLPVEDIVSSREFS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser589" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "O81283-1.604.604", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81283-1.609.609", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEDGGAVSSAKELDSSSEAV", "down_seq": "GNSDKVGADDLSDSEKEKPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser59" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O81283-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81283-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81283-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O81283-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81283-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81283-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.604.604", "start_pos": 604, "end_pos": 604, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVEGDSAEEDENKLPVEDIV", "down_seq": "SREFSFGGKEVDQEPSGEGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser604" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81283-1.589.589", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81283-1.609.609", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81283-1.620.620", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.609.609", "start_pos": 609, "end_pos": 609, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAEEDENKLPVEDIVSSREF", "down_seq": "FGGKEVDQEPSGEGVTRVDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ], "site_lbl": "Ser609" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81283-1.589.589", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81283-1.604.604", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81283-1.620.620", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81283-1.625.625", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.620.620", "start_pos": 620, "end_pos": 620, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDIVSSREFSFGGKEVDQEP", "down_seq": "GEGVTRVDGSESEEETEEMI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser620" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81283-1.604.604", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81283-1.609.609", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81283-1.625.625", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81283-1.630.630", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81283-1.632.632", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81283-1.636.636", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.625.625", "start_pos": 625, "end_pos": 625, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SREFSFGGKEVDQEPSGEGV", "down_seq": "RVDGSESEEETEEMIFGSSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Thr625" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81283-1.609.609", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81283-1.620.620", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81283-1.630.630", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81283-1.632.632", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81283-1.636.636", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81283-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O81283-1.644.644", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGAVSSAKELDSSSEAVSGN", "down_seq": "DKVGADDLSDSEKEKPNLVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser62" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O81283-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81283-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O81283-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O81283-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81283-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81283-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.630.630", "start_pos": 630, "end_pos": 630, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FGGKEVDQEPSGEGVTRVDG", "down_seq": "ESEEETEEMIFGSSEAAKQF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser630" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O81283-1.620.620", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81283-1.625.625", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81283-1.632.632", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81283-1.636.636", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81283-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81283-1.644.644", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.632.632", "start_pos": 632, "end_pos": 632, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKEVDQEPSGEGVTRVDGSE", "down_seq": "EEETEEMIFGSSEAAKQFLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser632" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O81283-1.620.620", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O81283-1.625.625", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81283-1.630.630", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81283-1.636.636", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81283-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81283-1.644.644", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.636.636", "start_pos": 636, "end_pos": 636, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DQEPSGEGVTRVDGSESEEE", "down_seq": "EEMIFGSSEAAKQFLAELEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Thr636" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81283-1.620.620", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81283-1.625.625", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O81283-1.630.630", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81283-1.632.632", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81283-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81283-1.644.644", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.643.643", "start_pos": 643, "end_pos": 643, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GVTRVDGSESEEETEEMIFG", "down_seq": "SEAAKQFLAELEKASSGIEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser643" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O81283-1.625.625", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O81283-1.630.630", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81283-1.632.632", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O81283-1.636.636", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81283-1.644.644", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O81283-1.658.658", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81283-1.659.659", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.644.644", "start_pos": 644, "end_pos": 644, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTRVDGSESEEETEEMIFGS", "down_seq": "EAAKQFLAELEKASSGIEAH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser644" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O81283-1.625.625", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O81283-1.630.630", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81283-1.632.632", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81283-1.636.636", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81283-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81283-1.658.658", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O81283-1.659.659", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.658.658", "start_pos": 658, "end_pos": 658, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EMIFGSSEAAKQFLAELEKA", "down_seq": "SGIEAHSDEANISNNMSDRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser658" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81283-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O81283-1.644.644", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81283-1.659.659", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81283-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81283-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O81283-1.675.675", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.659.659", "start_pos": 659, "end_pos": 659, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MIFGSSEAAKQFLAELEKAS", "down_seq": "GIEAHSDEANISNNMSDRID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser659" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81283-1.643.643", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O81283-1.644.644", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81283-1.658.658", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81283-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81283-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81283-1.675.675", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.665.665", "start_pos": 665, "end_pos": 665, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAAKQFLAELEKASSGIEAH", "down_seq": "DEANISNNMSDRIDGQIVTD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser665" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O81283-1.658.658", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O81283-1.659.659", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81283-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81283-1.675.675", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O81283-1.684.684", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.671.671", "start_pos": 671, "end_pos": 671, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAELEKASSGIEAHSDEANI", "down_seq": "NNMSDRIDGQIVTDSDEDVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser671" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O81283-1.658.658", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81283-1.659.659", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O81283-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81283-1.675.675", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81283-1.684.684", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O81283-1.686.686", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.675.675", "start_pos": 675, "end_pos": 675, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKASSGIEAHSDEANISNNM", "down_seq": "DRIDGQIVTDSDEDVDTEDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser675" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O81283-1.658.658", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O81283-1.659.659", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O81283-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81283-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81283-1.684.684", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81283-1.686.686", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O81283-1.692.692", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.684.684", "start_pos": 684, "end_pos": 684, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HSDEANISNNMSDRIDGQIV", "down_seq": "DSDEDVDTEDEGEEKMFDTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr684" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O81283-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O81283-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O81283-1.675.675", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81283-1.686.686", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81283-1.692.692", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.686.686", "start_pos": 686, "end_pos": 686, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEANISNNMSDRIDGQIVTD", "down_seq": "DEDVDTEDEGEEKMFDTAAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser686" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81283-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81283-1.675.675", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81283-1.684.684", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81283-1.692.692", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.692.692", "start_pos": 692, "end_pos": 692, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NNMSDRIDGQIVTDSDEDVD", "down_seq": "EDEGEEKMFDTAALAALLKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Thr692" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O81283-1.675.675", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81283-1.684.684", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O81283-1.686.686", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDSSSEAVSGNSDKVGADDL", "down_seq": "DSEKEKPNLVGDGKVSDEVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser71" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O81283-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O81283-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O81283-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81283-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O81283-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81283-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" }, { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSEAVSGNSDKVGADDLSD", "down_seq": "EKEKPNLVGDGKVSDEVDGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser73" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81283-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "O81283-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O81283-1.55.55", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O81283-1.59.59", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81283-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81283-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81283-1.93.93", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.746.746", "start_pos": 746, "end_pos": 746, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ITSQDGTKLFSMDRPAGLSS", "down_seq": "LRPLKPAAAPRANRSNIFSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser746" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81283-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "O81283-1", "length": 1503, "uniprot_id": "TC159_ARATH", "protein_name": "Translocase of chloroplast 159, chloroplastic", "refseq_ac": "NP_001319848", "refseq_name": "translocon at the outer envelope membrane of chloroplasts 159", "gene_name": "TOC159", "gene_names_uniprotkb": "TOC159; PPI2; T10P11.19; T14P8.24; TOC160; TOC86", "gene_names_refseq": "ATTOC159; PLASTID PROTEIN IMPORT 2; PPI2; T10P11.19; TOC159; TOC160; TOC86; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160; TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86; translocon at the outer envelope membrane of chloroplasts 159", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81283", "url": "https://www.uniprot.org/uniprotkb/O81283" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEKEKPNLVGDGKVSDEVDG", "down_seq": "LKEDSTTPEATPKPEVVSGE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81283", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81283" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser93" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "864", "end_pos": "864" }, { "start_pos": "868", "end_pos": "868" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "452", "end_pos": "452" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "589", "end_pos": "589" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "609", "end_pos": "609" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "632", "end_pos": "632" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "643", "end_pos": "643" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "675", "end_pos": "675" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "93", "end_pos": "93" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81283-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81291-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "O81291-1", "length": 669, "uniprot_id": "LRK44_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.4", "refseq_ac": "NP_567234", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK44", "gene_names_uniprotkb": "LECRK44; T14P8.4", "gene_names_refseq": "L-type lectin receptor kinase IV.4; LecRK-IV.4; T14P8.4; T14P8_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VIAPNPRLPFGSPLQYLGLF", "down_seq": "VTNNGNVRNHVFAVELDTIM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn127", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81291-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "O81291-1", "length": 669, "uniprot_id": "LRK44_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.4", "refseq_ac": "NP_567234", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK44", "gene_names_uniprotkb": "LECRK44; T14P8.4", "gene_names_refseq": "L-type lectin receptor kinase IV.4; LecRK-IV.4; T14P8.4; T14P8_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GNVRNHVFAVELDTIMNIEF", "down_seq": "DTNNNHVGIDINSLNSVKSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn152", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81291-1.185.185", "start_pos": 185, "end_pos": 185, "uniprot_canonical_ac": "O81291-1", "length": 669, "uniprot_id": "LRK44_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.4", "refseq_ac": "NP_567234", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK44", "gene_names_uniprotkb": "LECRK44; T14P8.4", "gene_names_refseq": "L-type lectin receptor kinase IV.4; LecRK-IV.4; T14P8.4; T14P8_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLNSVKSSPAGYWDENDQFH", "down_seq": "LTLISSKRMQVWVDFDGPTH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn185", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81291-1.58.58", "start_pos": 58, "end_pos": 58, "uniprot_canonical_ac": "O81291-1", "length": 669, "uniprot_id": "LRK44_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.4", "refseq_ac": "NP_567234", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK44", "gene_names_uniprotkb": "LECRK44; T14P8.4", "gene_names_refseq": "L-type lectin receptor kinase IV.4; LecRK-IV.4; T14P8.4; T14P8_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TDISILGIATITPNGLLKLT", "down_seq": "TTMQSTGHAFYTKPIRFKDS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn58", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81291-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "O81291-1", "length": 669, "uniprot_id": "LRK44_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.4", "refseq_ac": "NP_567234", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK44", "gene_names_uniprotkb": "LECRK44; T14P8.4", "gene_names_refseq": "L-type lectin receptor kinase IV.4; LecRK-IV.4; T14P8.4; T14P8_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TMQSTGHAFYTKPIRFKDSP", "down_seq": "GTVSSFSTTFVFAIHSQIPI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn80", "evidence": [ { "id": "O81291", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81291#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81291-1.363.363", "start_pos": 363, "end_pos": 363, "uniprot_canonical_ac": "O81291-1", "length": 669, "uniprot_id": "LRK44_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.4", "refseq_ac": "NP_567234", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK44", "gene_names_uniprotkb": "LECRK44; T14P8.4", "gene_names_refseq": "L-type lectin receptor kinase IV.4; LecRK-IV.4; T14P8.4; T14P8_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81291", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81291", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LYYATKGFKDKNILGSGGFG", "down_seq": "VYKGIMPKTKKEIAVKRVSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81291", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81291" } ], "site_lbl": "Ser363" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O81291-1.365.365", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81291-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "O81291-1", "length": 669, "uniprot_id": "LRK44_ARATH", "protein_name": "L-type lectin-domain containing receptor kinase IV.4", "refseq_ac": "NP_567234", "refseq_name": "Concanavalin A-like lectin protein kinase family protein", "gene_name": "LECRK44", "gene_names_uniprotkb": "LECRK44; T14P8.4", "gene_names_refseq": "L-type lectin receptor kinase IV.4; LecRK-IV.4; T14P8.4; T14P8_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81291", "url": "https://www.uniprot.org/uniprotkb/O81291" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81291", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81291", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "YATKGFKDKNILGSGGFGSV", "down_seq": "KGIMPKTKKEIAVKRVSNES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81291", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81291" } ], "site_lbl": "Tyr365" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "363", "end_pos": "363" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81291-1.363.363", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81313-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "O81313-1", "length": 198, "uniprot_id": "IND_ARATH", "protein_name": "Transcription factor IND", "refseq_ac": "NP_191923", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "IND", "gene_names_uniprotkb": "IND; BHLH40; EN120; F6N15.18", "gene_names_refseq": "EDA33; EMBRYO SAC DEVELOPMENT ARREST 33; F6N15.18; F6N15_18; GT140; IND1; INDEHISCENT; IND", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81313", "url": "https://www.uniprot.org/uniprotkb/O81313" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81313", "url": "https://www.uniprot.org/uniprotkb/O81313", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "VPKPNRRNVRISDDPQTVVA", "down_seq": "RRRERISEKIRILKRIVPGG", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "H", "comment": "In ind-3; defects in margin definition, especially at the fruit base.", "evidence": [ { "database": "UniProtKB", "id": "O81313", "url": "https://www.uniprot.org/uniprotkb/O81313" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "141", "end_pos": "141" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "O81313-1.141.141", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81313-1.141.141", "start_pos": 141, "end_pos": 141, "uniprot_canonical_ac": "O81313-1", "length": 198, "uniprot_id": "IND_ARATH", "protein_name": "Transcription factor IND", "refseq_ac": "NP_191923", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "IND", "gene_names_uniprotkb": "IND; BHLH40; EN120; F6N15.18", "gene_names_refseq": "EDA33; EMBRYO SAC DEVELOPMENT ARREST 33; F6N15.18; F6N15_18; GT140; IND1; INDEHISCENT; IND", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81313", "url": "https://www.uniprot.org/uniprotkb/O81313" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81313", "url": "https://www.uniprot.org/uniprotkb/O81313", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "DPQTVVARRRRERISEKIRI", "down_seq": "KRIVPGGAKMDTASMLDEAI", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "F", "comment": "In ind-1; defects in margin definition, especially at the fruit base.", "evidence": [ { "database": "UniProtKB", "id": "O81313", "url": "https://www.uniprot.org/uniprotkb/O81313" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "141", "end_pos": "141" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O81313-1.128.128", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81472-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "TSFRVDGVDDGEIDRIYQYI", "down_seq": "VSGPEDFAISSDAWKARMEH", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In summ1-9; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O81472-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81472-1.183.183", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "GVDDGEIDRIYQYIGVSGPE", "down_seq": "FAISSDAWKARMEHERSSSD", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "In summ1-4; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O81472-1.177.177", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.492.492", "start_pos": 492, "end_pos": 492, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "iTILLING: a personalized approach to the identification of induced mutations in Arabidopsis.", "journal": "Plant physiology", "date": "2010-09", "authors": "Bush Susan M, Krysan Patrick J", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "reference": [ { "type": "PubMed", "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "SFTTNEGDSSSTVSNTSPIC", "down_seq": "SGGSINTSWQKGQLLRQGSF", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "I", "comment": "No obvious abnormal phenotype.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.523.523", "start_pos": 523, "end_pos": 523, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "KGQLLRQGSFGSVYEAISED", "down_seq": "DFFAVKEVSLLDQGSQAQEC", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In summ1-3; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O81472-1.527.527", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81472-1.530.530", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O81472-1.538.538", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.527.527", "start_pos": 527, "end_pos": 527, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "iTILLING: a personalized approach to the identification of induced mutations in Arabidopsis.", "journal": "Plant physiology", "date": "2010-09", "authors": "Bush Susan M, Krysan Patrick J", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "reference": [ { "type": "PubMed", "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "LRQGSFGSVYEAISEDGDFF", "down_seq": "VKEVSLLDQGSQAQECIQQL", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "No obvious abnormal phenotype.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O81472-1.523.523", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O81472-1.530.530", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81472-1.538.538", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.530.530", "start_pos": 530, "end_pos": 530, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "GSFGSVYEAISEDGDFFAVK", "down_seq": "VSLLDQGSQAQECIQQLEGE", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In summ1-19; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O81472-1.523.523", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O81472-1.527.527", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81472-1.538.538", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.538.538", "start_pos": 538, "end_pos": 538, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "iTILLING: a personalized approach to the identification of induced mutations in Arabidopsis.", "journal": "Plant physiology", "date": "2010-09", "authors": "Bush Susan M, Krysan Patrick J", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "reference": [ { "type": "PubMed", "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AISEDGDFFAVKEVSLLDQG", "down_seq": "QAQECIQQLEGEIALLSQLE", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "N", "comment": "No obvious abnormal phenotype.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81472-1.523.523", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81472-1.527.527", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81472-1.530.530", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O81472-1.557.557", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "SDSTCSFLTPSMEFPDRISF", "down_seq": "RIDFSEAAPTGVVLPSTSSE", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "W", "comment": "In summ1-13; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.557.557", "start_pos": 557, "end_pos": 557, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "iTILLING: a personalized approach to the identification of induced mutations in Arabidopsis.", "journal": "Plant physiology", "date": "2010-09", "authors": "Bush Susan M, Krysan Patrick J", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "reference": [ { "type": "PubMed", "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "GSQAQECIQQLEGEIALLSQ", "down_seq": "EHQNILRYRGTDKDGSNLYI", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "F", "comment": "No obvious abnormal phenotype.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "20668060", "url": "https://glygen.org/publication/PubMed/20668060" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O81472-1.538.538", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.602.602", "start_pos": 602, "end_pos": 602, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTQGSLLELYRRYQIRDSLI", "down_seq": "LYTKQILDGLKYLHHKGFIH", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "F", "comment": "In summ1-7; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O81472-1.611.611", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.611.611", "start_pos": 611, "end_pos": 611, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "YRRYQIRDSLISLYTKQILD", "down_seq": "LKYLHHKGFIHRDIKCATIL", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "In summ1-17; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O81472-1.602.602", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O81472-1.628.628", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.628.628", "start_pos": 628, "end_pos": 628, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "ILDGLKYLHHKGFIHRDIKC", "down_seq": "TILVDANGTVKLADFGLAKV", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In summ1-16; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O81472-1.611.611", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81472-1.644.644", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.644.644", "start_pos": 644, "end_pos": 644, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "DIKCATILVDANGTVKLADF", "down_seq": "LAKVSKLNDIKSRKETLFWM", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In summ1-8; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81472-1.628.628", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.665.665", "start_pos": 665, "end_pos": 665, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "LAKVSKLNDIKSRKETLFWM", "down_seq": "PEVINRKDNDGYRSPADIWS", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In summ1-18; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O81472-1.667.667", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.667.667", "start_pos": 667, "end_pos": 667, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "KVSKLNDIKSRKETLFWMAP", "down_seq": "VINRKDNDGYRSPADIWSLG", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In summ1-5; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81472-1.665.665", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81472-1.687.687", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.687.687", "start_pos": 687, "end_pos": 687, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "EVINRKDNDGYRSPADIWSL", "down_seq": "CTVLEMCTGQIPYSDLEPVE", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "In summ1-12; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81472-1.667.667", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.715.715", "start_pos": 715, "end_pos": 715, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "TGQIPYSDLEPVEALFRIRR", "down_seq": "TLPEVPDTLSLDARHFILKC", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "In summ1-11; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.740.740", "start_pos": 740, "end_pos": 740, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "VPDTLSLDARHFILKCLKLN", "down_seq": "EERPTATELLNHPFVRRPLP", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "In summ1-2; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O81472-1.746.746", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.746.746", "start_pos": 746, "end_pos": 746, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "LDARHFILKCLKLNPEERPT", "down_seq": "TELLNHPFVRRPLPSSGSGS", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In summ1-6; suppression of impaired plant defense responses in mkk1 mkk2, mekk1 and mpk4 mutants.", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O81472-1.740.740", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRRNIDYDAGEDSSSLLITR", "down_seq": "LDFPNRTSFRVDGVDDGEID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "site_lbl": "Ser150" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "O81472-1.158.158", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGEDSSSLLITRSLDFPNRT", "down_seq": "FRVDGVDDGEIDRIYQYIGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O81472-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O81472-1.177.177", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.210.210", "start_pos": 210, "end_pos": 210, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AWKARMEHERSSSDVVNKLK", "down_seq": "LDLDSREAGPSGGVVASSSM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser210" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O81472-1.229.229", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSLDLDSREAGPSGGVVASS", "down_seq": "MNHKFQGHDLSEAGSIGVVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O81472-1.210.210", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.364.364", "start_pos": 364, "end_pos": 364, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TILVKSKGYLVSNDGGIKGV", "down_seq": "SPVLNLRPTDKEVVDSGTVE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr364" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O81472-1.365.365", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ILVKSKGYLVSNDGGIKGVT", "down_seq": "PVLNLRPTDKEVVDSGTVEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK4", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ], "site_lbl": "Ser365" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O81472-1.364.364", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.768.768", "start_pos": 768, "end_pos": 768, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELLNHPFVRRPLPSSGSGST", "down_seq": "PLIRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser768" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Kong Qing, Qu Na, Gao Minghui, Zhang Zhibin, Ding Xiaojun, Yang Fan, Li Yingzhong, Dong Oliver X, Chen She, Li Xin, Zhang Yuelin", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAAPTGVVLPSTSSELTRSN", "down_seq": "SENKIPNEDISVSTSSRYLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" }, { "database": "PubMed", "id": "22643122", "url": "https://glygen.org/publication/PubMed/22643122" }, { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81472-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "O81472-1", "length": 773, "uniprot_id": "MP3K2_ARATH", "protein_name": "Mitogen-activated protein kinase kinase kinase 9", "refseq_ac": "NP_192588", "refseq_name": "mitogen-activated protein kinase kinase kinase 9", "gene_name": "MEKK2", "gene_names_uniprotkb": "MEKK2; MAPKKK9; SUMM1; T15F16.3", "gene_names_refseq": "MAPK/ERK KINASE KINASE 2; MAPKKK9; MEKK2; SUMM1; T15F16.3; T15F16_3; mitogen-activated protein kinase kinase kinase 9; suppressor of mkk1 mkk2 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81472", "url": "https://www.uniprot.org/uniprotkb/O81472" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKKSSDK", "down_seq": "PVRQHDTATQINSDAVSSST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81472", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81472" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "530", "end_pos": "530" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "740", "end_pos": "740" }, { "start_pos": "746", "end_pos": "746" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "768", "end_pos": "768" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81821-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "O81821-1", "length": 481, "uniprot_id": "HFA1B_ARATH", "protein_name": "Heat stress transcription factor A-1b", "refseq_ac": "NP_197184", "refseq_name": "heat shock factor 3", "gene_name": "HSFA1B", "gene_names_uniprotkb": "HSFA1B; F5E19.160; HSF18; HSF3", "gene_names_refseq": "ARABIDOPSIS HEAT SHOCK FACTOR 3; ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B; ATHSF3; ATHSFA1B; CLASS A HEAT SHOCK FACTOR 1B; F5E19.160; F5E19_160; HSF3; HSFA1B; heat shock factor 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81821", "url": "https://www.uniprot.org/uniprotkb/O81821" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81821", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81821" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81821", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81821" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O81821", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81821", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QPSINEAAQNMLRQFLNTST", "down_seq": "PRYESVSNNPDSFLLGDVPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81821", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81821" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser278" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "283", "end_pos": "283" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O81821-1.283.283", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81821-1.283.283", "start_pos": 283, "end_pos": 283, "uniprot_canonical_ac": "O81821-1", "length": 481, "uniprot_id": "HFA1B_ARATH", "protein_name": "Heat stress transcription factor A-1b", "refseq_ac": "NP_197184", "refseq_name": "heat shock factor 3", "gene_name": "HSFA1B", "gene_names_uniprotkb": "HSFA1B; F5E19.160; HSF18; HSF3", "gene_names_refseq": "ARABIDOPSIS HEAT SHOCK FACTOR 3; ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B; ATHSF3; ATHSFA1B; CLASS A HEAT SHOCK FACTOR 1B; F5E19.160; F5E19_160; HSF3; HSFA1B; heat shock factor 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81821", "url": "https://www.uniprot.org/uniprotkb/O81821" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O81821", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81821" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O81821", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81821", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAAQNMLRQFLNTSTSPRYE", "down_seq": "VSNNPDSFLLGDVPSSTSVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81821", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81821" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser283" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "283", "end_pos": "283" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O81821-1.278.278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81833-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AMGRENSLFDYKFTSSAQEV", "down_seq": "YSWTPRHRIVSRLVLNNTGK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn249", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "O81833-1.265.265", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AQEVNYSWTPRHRIVSRLVL", "down_seq": "NTGKLHRFIQSKQNQWILAN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn265", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81833-1.249.249", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KNTPSCSCLQGFKPKSGRKW", "down_seq": "ISRGAYGCVHEIPTNCEKKD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn329", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.385.385", "start_pos": 385, "end_pos": 385, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SWYDAKNEMTLEDCKIKCSS", "down_seq": "CSCTAYANTDIREGGKGCLL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn385", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FAVVWVANRNNPLYGTSGFL", "down_seq": "LSSLGDLQLFDGEHKALWSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "O81833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81833#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.534.534", "start_pos": 534, "end_pos": 534, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VYKGKLEDGQEIAVKRLSAN", "down_seq": "GQGVEEFKNEVKLIAKLQHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "site_lbl": "Ser534" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.642.642", "start_pos": 642, "end_pos": 642, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IHRDLKAGNVLLDNDMNPKI", "down_seq": "DFGLAKSFGGDQSESSTNRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "site_lbl": "Ser642" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "O81833-1.659.659", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.659.659", "start_pos": 659, "end_pos": 659, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PKISDFGLAKSFGGDQSESS", "down_seq": "NRVVGTYGYMPPEYAIDGHF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "site_lbl": "Thr659" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O81833-1.642.642", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.797.797", "start_pos": 797, "end_pos": 797, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLPHPTQPGFFTNRNVPDIS", "down_seq": "SLSLRSQNEVSITMLQGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "site_lbl": "Ser797" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O81833-1.800.800", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81833-1.803.803", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81833-1.810.810", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.800.800", "start_pos": 800, "end_pos": 800, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81833", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81833" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81833", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81833" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81833", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81833", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HPTQPGFFTNRNVPDISSSL", "down_seq": "LRSQNEVSITMLQGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81833", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81833" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser800" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O81833-1.797.797", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O81833-1.803.803", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O81833-1.810.810", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81833-1.803.803", "start_pos": 803, "end_pos": 803, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QPGFFTNRNVPDISSSLSLR", "down_seq": "QNEVSITMLQGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "site_lbl": "Ser803" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O81833-1.797.797", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O81833-1.800.800", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81833-1.810.810", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81833-1.810.810", "start_pos": 810, "end_pos": 810, "uniprot_canonical_ac": "O81833-1", "length": 815, "uniprot_id": "SD11_ARATH", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1", "refseq_ac": "NP_194460", "refseq_name": "S-locus lectin protein kinase family protein", "gene_name": "SD11", "gene_names_uniprotkb": "SD11; M4I22.110", "gene_names_refseq": "M4I22.110; M4I22_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RNVPDISSSLSLRSQNEVSI", "down_seq": "MLQGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O81833", "url": "https://www.uniprot.org/uniprotkb/O81833" } ], "site_lbl": "Thr810" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "249", "end_pos": "249" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "534", "end_pos": "534" }, { "start_pos": "642", "end_pos": "642" }, { "start_pos": "659", "end_pos": "659" }, { "start_pos": "797", "end_pos": "797" }, { "start_pos": "800", "end_pos": "800" }, { "start_pos": "803", "end_pos": "803" }, { "start_pos": "810", "end_pos": "810" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O81833-1.797.797", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O81833-1.800.800", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O81833-1.803.803", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81845-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "O81845-1", "length": 306, "uniprot_id": "PUMP1_ARATH", "protein_name": "Mitochondrial uncoupling protein 1", "refseq_ac": "NP_190979", "refseq_name": "plant uncoupling mitochondrial protein 1", "gene_name": "PUMP1", "gene_names_uniprotkb": "PUMP1; F24B22.70; UCP1", "gene_names_refseq": "ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1; ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1; ATPUMP1; ATUCP1; PUMP1; UCP1; UCP; UNCOUPLING PROTEIN 1; plant uncoupling mitochondrial protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutational analysis of Arabidopsis thaliana plant uncoupling mitochondrial protein.", "journal": "Biochimica et biophysica acta", "date": "2007-12", "authors": "F\u00e1varo Regiane Degan, Boreck\u00fd Jiri, Colombi D\u00e9bora, Vercesi An\u00edbal E, Maia Ivan G", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "reference": [ { "type": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "crossref": [ { "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LGIMVANPTDLVKVRLQAEG", "down_seq": "LAAGAPRRYSGALNAYSTIV", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "H", "comment": "Reduces proton transport activity 3-fold.", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" }, { "database": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "O81845-1.155.155", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81845-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "O81845-1", "length": 306, "uniprot_id": "PUMP1_ARATH", "protein_name": "Mitochondrial uncoupling protein 1", "refseq_ac": "NP_190979", "refseq_name": "plant uncoupling mitochondrial protein 1", "gene_name": "PUMP1", "gene_names_uniprotkb": "PUMP1; F24B22.70; UCP1", "gene_names_refseq": "ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1; ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1; ATPUMP1; ATUCP1; PUMP1; UCP1; UCP; UNCOUPLING PROTEIN 1; plant uncoupling mitochondrial protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutational analysis of Arabidopsis thaliana plant uncoupling mitochondrial protein.", "journal": "Biochimica et biophysica acta", "date": "2007-12", "authors": "F\u00e1varo Regiane Degan, Boreck\u00fd Jiri, Colombi D\u00e9bora, Vercesi An\u00edbal E, Maia Ivan G", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "reference": [ { "type": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "crossref": [ { "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "TDLVKVRLQAEGKLAAGAPR", "down_seq": "YSGALNAYSTIVRQEGVRAL", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "L", "comment": "Slightly reduces proton transport activity.", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" }, { "database": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O81845-1.147.147", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81845-1.269.269", "start_pos": 269, "end_pos": 269, "uniprot_canonical_ac": "O81845-1", "length": 306, "uniprot_id": "PUMP1_ARATH", "protein_name": "Mitochondrial uncoupling protein 1", "refseq_ac": "NP_190979", "refseq_name": "plant uncoupling mitochondrial protein 1", "gene_name": "PUMP1", "gene_names_uniprotkb": "PUMP1; F24B22.70; UCP1", "gene_names_refseq": "ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1; ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1; ATPUMP1; ATUCP1; PUMP1; UCP1; UCP; UNCOUPLING PROTEIN 1; plant uncoupling mitochondrial protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutational analysis of Arabidopsis thaliana plant uncoupling mitochondrial protein.", "journal": "Biochimica et biophysica acta", "date": "2007-12", "authors": "F\u00e1varo Regiane Degan, Boreck\u00fd Jiri, Colombi D\u00e9bora, Vercesi An\u00edbal E, Maia Ivan G", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "reference": [ { "type": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "crossref": [ { "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "YKGTIDCFVKTLKSDGPMAF", "down_seq": "KGFIPNFGRLGSWNVIMFLT", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Reduces proton transport activity 3-fold.", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" }, { "database": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81845-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "O81845-1", "length": 306, "uniprot_id": "PUMP1_ARATH", "protein_name": "Mitochondrial uncoupling protein 1", "refseq_ac": "NP_190979", "refseq_name": "plant uncoupling mitochondrial protein 1", "gene_name": "PUMP1", "gene_names_uniprotkb": "PUMP1; F24B22.70; UCP1", "gene_names_refseq": "ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1; ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1; ATPUMP1; ATUCP1; PUMP1; UCP1; UCP; UNCOUPLING PROTEIN 1; plant uncoupling mitochondrial protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutational analysis of Arabidopsis thaliana plant uncoupling mitochondrial protein.", "journal": "Biochimica et biophysica acta", "date": "2007-12", "authors": "F\u00e1varo Regiane Degan, Boreck\u00fd Jiri, Colombi D\u00e9bora, Vercesi An\u00edbal E, Maia Ivan G", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "reference": [ { "type": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "crossref": [ { "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "DLSLPKTFACSAFAACVGEV", "down_seq": "TIPLDTAKVRLQLQKSALAG", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Reduces proton transport activity 3-fold.", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" }, { "database": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81845-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "O81845-1", "length": 306, "uniprot_id": "PUMP1_ARATH", "protein_name": "Mitochondrial uncoupling protein 1", "refseq_ac": "NP_190979", "refseq_name": "plant uncoupling mitochondrial protein 1", "gene_name": "PUMP1", "gene_names_uniprotkb": "PUMP1; F24B22.70; UCP1", "gene_names_refseq": "ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1; ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1; ATPUMP1; ATUCP1; PUMP1; UCP1; UCP; UNCOUPLING PROTEIN 1; plant uncoupling mitochondrial protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutational analysis of Arabidopsis thaliana plant uncoupling mitochondrial protein.", "journal": "Biochimica et biophysica acta", "date": "2007-12", "authors": "F\u00e1varo Regiane Degan, Boreck\u00fd Jiri, Colombi D\u00e9bora, Vercesi An\u00edbal E, Maia Ivan G", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "reference": [ { "type": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "crossref": [ { "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "GTIAREEGLRSLWKGVVPGL", "down_seq": "RQCLFGGLRIGMYEPVKNLY", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "L", "comment": "Reduces proton transport activity 3-fold.", "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" }, { "database": "PubMed", "id": "17980348", "url": "https://glygen.org/publication/PubMed/17980348" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "147", "end_pos": "147" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81852-1.441.441", "start_pos": 441, "end_pos": 441, "uniprot_canonical_ac": "O81852-1", "length": 916, "uniprot_id": "AKH2_ARATH", "protein_name": "Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic", "refseq_ac": "NP_193706", "refseq_name": "aspartate kinase-homoserine dehydrogenase ii", "gene_name": "AKHSDH2", "gene_names_uniprotkb": "AKHSDH2; AK-HSDH II; T16H5.70", "gene_names_refseq": "AK-HSDH II; AK-HSDH; ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; T16H5.70; T16H5_70; aspartate kinase-homoserine dehydrogenase ii", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of control of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase by threonine.", "journal": "The Journal of biological chemistry", "date": "2003-02-14", "authors": "Paris St\u00e9phane, Viemon Claire, Curien Gilles, Dumas Renaud", "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "reference": [ { "type": "PubMed", "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751" } ] } ], "crossref": [ { "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "PGTASDIFGCVKDVGANVIM", "down_seq": "SQASSEHSVCFAVPEKEVNA", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "A", "comment": "Loss of threonine sensitivity for the aspartokinase activity and decreased inhibition of homoserine dehydrogenase activity by threonine.", "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" }, { "database": "PubMed", "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "694", "end_pos": "694" }, { "start_pos": "699", "end_pos": "699" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "712", "end_pos": "712" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O81852-1.443.443", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81852-1.443.443", "start_pos": 443, "end_pos": 443, "uniprot_canonical_ac": "O81852-1", "length": 916, "uniprot_id": "AKH2_ARATH", "protein_name": "Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic", "refseq_ac": "NP_193706", "refseq_name": "aspartate kinase-homoserine dehydrogenase ii", "gene_name": "AKHSDH2", "gene_names_uniprotkb": "AKHSDH2; AK-HSDH II; T16H5.70", "gene_names_refseq": "AK-HSDH II; AK-HSDH; ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; T16H5.70; T16H5_70; aspartate kinase-homoserine dehydrogenase ii", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of control of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase by threonine.", "journal": "The Journal of biological chemistry", "date": "2003-02-14", "authors": "Paris St\u00e9phane, Viemon Claire, Curien Gilles, Dumas Renaud", "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "reference": [ { "type": "PubMed", "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751" } ] } ], "crossref": [ { "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "TASDIFGCVKDVGANVIMIS", "down_seq": "ASSEHSVCFAVPEKEVNAVS", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "A", "comment": "Loss of threonine sensitivity for the aspartokinase activity and decreased inhibition of homoserine dehydrogenase activity by threonine.", "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" }, { "database": "PubMed", "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "694", "end_pos": "694" }, { "start_pos": "699", "end_pos": "699" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "712", "end_pos": "712" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81852-1.441.441", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81852-1.522.522", "start_pos": 522, "end_pos": 522, "uniprot_canonical_ac": "O81852-1", "length": 916, "uniprot_id": "AKH2_ARATH", "protein_name": "Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic", "refseq_ac": "NP_193706", "refseq_name": "aspartate kinase-homoserine dehydrogenase ii", "gene_name": "AKHSDH2", "gene_names_uniprotkb": "AKHSDH2; AK-HSDH II; T16H5.70", "gene_names_refseq": "AK-HSDH II; AK-HSDH; ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; T16H5.70; T16H5_70; aspartate kinase-homoserine dehydrogenase ii", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of control of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase by threonine.", "journal": "The Journal of biological chemistry", "date": "2003-02-14", "authors": "Paris St\u00e9phane, Viemon Claire, Curien Gilles, Dumas Renaud", "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "reference": [ { "type": "PubMed", "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751" } ] } ], "crossref": [ { "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "PGVSCTLFSALAKANINVRA", "down_seq": "SQGCSEYNVTVVIKREDSVK", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "A", "comment": "No effect on the inhibition of aspartokinase activity by threonine, but decreased inhibition of homoserine dehydrogenase activity by threonine.", "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" }, { "database": "PubMed", "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "694", "end_pos": "694" }, { "start_pos": "699", "end_pos": "699" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "712", "end_pos": "712" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O81852-1.524.524", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81852-1.524.524", "start_pos": 524, "end_pos": 524, "uniprot_canonical_ac": "O81852-1", "length": 916, "uniprot_id": "AKH2_ARATH", "protein_name": "Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic", "refseq_ac": "NP_193706", "refseq_name": "aspartate kinase-homoserine dehydrogenase ii", "gene_name": "AKHSDH2", "gene_names_uniprotkb": "AKHSDH2; AK-HSDH II; T16H5.70", "gene_names_refseq": "AK-HSDH II; AK-HSDH; ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; T16H5.70; T16H5_70; aspartate kinase-homoserine dehydrogenase ii", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of control of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase by threonine.", "journal": "The Journal of biological chemistry", "date": "2003-02-14", "authors": "Paris St\u00e9phane, Viemon Claire, Curien Gilles, Dumas Renaud", "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "reference": [ { "type": "PubMed", "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751" } ] } ], "crossref": [ { "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "VSCTLFSALAKANINVRAIS", "down_seq": "GCSEYNVTVVIKREDSVKAL", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "A", "comment": "No effect on the inhibition of aspartokinase activity by threonine, but decreased inhibition of homoserine dehydrogenase activity by threonine.", "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" }, { "database": "PubMed", "id": "12435751", "url": "https://glygen.org/publication/PubMed/12435751" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "694", "end_pos": "694" }, { "start_pos": "699", "end_pos": "699" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "712", "end_pos": "712" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81852-1.522.522", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81852-1.694.694", "start_pos": 694, "end_pos": 694, "uniprot_canonical_ac": "O81852-1", "length": 916, "uniprot_id": "AKH2_ARATH", "protein_name": "Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic", "refseq_ac": "NP_193706", "refseq_name": "aspartate kinase-homoserine dehydrogenase ii", "gene_name": "AKHSDH2", "gene_names_uniprotkb": "AKHSDH2; AK-HSDH II; T16H5.70", "gene_names_refseq": "AK-HSDH II; AK-HSDH; ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; T16H5.70; T16H5_70; aspartate kinase-homoserine dehydrogenase ii", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KANSGPLDQYLKLRDLQRKS", "down_seq": "THYFYEATVGAGLPIISTLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr694" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "694", "end_pos": "694" }, { "start_pos": "699", "end_pos": "699" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "712", "end_pos": "712" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O81852-1.699.699", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O81852-1.711.711", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81852-1.712.712", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81852-1.699.699", "start_pos": 699, "end_pos": 699, "uniprot_canonical_ac": "O81852-1", "length": 916, "uniprot_id": "AKH2_ARATH", "protein_name": "Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic", "refseq_ac": "NP_193706", "refseq_name": "aspartate kinase-homoserine dehydrogenase ii", "gene_name": "AKHSDH2", "gene_names_uniprotkb": "AKHSDH2; AK-HSDH II; T16H5.70", "gene_names_refseq": "AK-HSDH II; AK-HSDH; ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; T16H5.70; T16H5_70; aspartate kinase-homoserine dehydrogenase ii", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PLDQYLKLRDLQRKSYTHYF", "down_seq": "EATVGAGLPIISTLRGLLET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr699" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "694", "end_pos": "694" }, { "start_pos": "699", "end_pos": "699" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "712", "end_pos": "712" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O81852-1.694.694", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O81852-1.711.711", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81852-1.712.712", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81852-1.711.711", "start_pos": 711, "end_pos": 711, "uniprot_canonical_ac": "O81852-1", "length": 916, "uniprot_id": "AKH2_ARATH", "protein_name": "Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic", "refseq_ac": "NP_193706", "refseq_name": "aspartate kinase-homoserine dehydrogenase ii", "gene_name": "AKHSDH2", "gene_names_uniprotkb": "AKHSDH2; AK-HSDH II; T16H5.70", "gene_names_refseq": "AK-HSDH II; AK-HSDH; ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; T16H5.70; T16H5_70; aspartate kinase-homoserine dehydrogenase ii", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKSYTHYFYEATVGAGLPII", "down_seq": "TLRGLLETGDKILRIEGICS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser711" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "694", "end_pos": "694" }, { "start_pos": "699", "end_pos": "699" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "712", "end_pos": "712" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O81852-1.694.694", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O81852-1.699.699", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O81852-1.712.712", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81852-1.712.712", "start_pos": 712, "end_pos": 712, "uniprot_canonical_ac": "O81852-1", "length": 916, "uniprot_id": "AKH2_ARATH", "protein_name": "Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic", "refseq_ac": "NP_193706", "refseq_name": "aspartate kinase-homoserine dehydrogenase ii", "gene_name": "AKHSDH2", "gene_names_uniprotkb": "AKHSDH2; AK-HSDH II; T16H5.70", "gene_names_refseq": "AK-HSDH II; AK-HSDH; ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE; T16H5.70; T16H5_70; aspartate kinase-homoserine dehydrogenase ii", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81852", "url": "https://www.uniprot.org/uniprotkb/O81852" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KSYTHYFYEATVGAGLPIIS", "down_seq": "LRGLLETGDKILRIEGICSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81852", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81852" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr712" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "522", "end_pos": "522" }, { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "694", "end_pos": "694" }, { "start_pos": "699", "end_pos": "699" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "712", "end_pos": "712" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O81852-1.694.694", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O81852-1.699.699", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O81852-1.711.711", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81862-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "O81862-1", "length": 379, "uniprot_id": "CHIC_ARATH", "protein_name": "Class V chitinase", "refseq_ac": "NP_001319999", "refseq_name": "Glycosyl hydrolase family protein with chitinase insertion domain-containing protein", "gene_name": "ChiC", "gene_names_uniprotkb": "ChiC; T16H5.170", "gene_names_refseq": "ChiC; T16H5.170; T16H5_170; class V chitinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SIGYGQIRKFIVDNGATTVY", "down_seq": "STVVGDYCYAGTNWIGYDDN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn307", "evidence": [ { "id": "O81862", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81862#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "307", "end_pos": "307" }, { "start_pos": "327", "end_pos": "327" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "O81862-1.327.327", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81862-1.327.327", "start_pos": 327, "end_pos": 327, "uniprot_canonical_ac": "O81862-1", "length": 379, "uniprot_id": "CHIC_ARATH", "protein_name": "Class V chitinase", "refseq_ac": "NP_001319999", "refseq_name": "Glycosyl hydrolase family protein with chitinase insertion domain-containing protein", "gene_name": "ChiC", "gene_names_uniprotkb": "ChiC; T16H5.170", "gene_names_refseq": "ChiC; T16H5.170; T16H5_170; class V chitinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSTVVGDYCYAGTNWIGYDD", "down_seq": "QSIVTKVRYAKQRGLLGYFS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn327", "evidence": [ { "id": "O81862", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81862#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "307", "end_pos": "307" }, { "start_pos": "327", "end_pos": "327" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81862-1.307.307", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81862-1.140.140", "start_pos": 140, "end_pos": 140, "uniprot_canonical_ac": "O81862-1", "length": 379, "uniprot_id": "CHIC_ARATH", "protein_name": "Class V chitinase", "refseq_ac": "NP_001319999", "refseq_name": "Glycosyl hydrolase family protein with chitinase insertion domain-containing protein", "gene_name": "ChiC", "gene_names_uniprotkb": "ChiC; T16H5.170", "gene_names_refseq": "ChiC; T16H5.170; T16H5_170; class V chitinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Introduction of a tryptophan side chain into subsite +1 enhances transglycosylation activity of a GH-18 chitinase from Arabidopsis thaliana, AtChiC.", "journal": "Glycobiology", "date": "2013-01", "authors": "Umemoto Naoyuki, Ohnuma Takayuki, Mizuhara Mamiko, Sato Hirokazu, Skriver Karen, Fukamizo Tamo", "evidence": [ { "database": "UniProtKB", "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862" } ], "reference": [ { "type": "PubMed", "id": "22936594", "url": "https://glygen.org/publication/PubMed/22936594" } ] } ], "crossref": [ { "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22936594", "url": "https://glygen.org/publication/PubMed/22936594", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "IDSSIRVARSYGFHGLDLDW", "down_seq": "YPSSATEMTNFGTLLREWRS", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "Q", "comment": "Loss of activity and increased association constant for (GlcNAc)5.", "evidence": [ { "database": "UniProtKB", "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862" }, { "database": "PubMed", "id": "22936594", "url": "https://glygen.org/publication/PubMed/22936594" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "307", "end_pos": "307" }, { "start_pos": "327", "end_pos": "327" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81862-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "O81862-1", "length": 379, "uniprot_id": "CHIC_ARATH", "protein_name": "Class V chitinase", "refseq_ac": "NP_001319999", "refseq_name": "Glycosyl hydrolase family protein with chitinase insertion domain-containing protein", "gene_name": "ChiC", "gene_names_uniprotkb": "ChiC; T16H5.170", "gene_names_refseq": "ChiC; T16H5.170; T16H5_170; class V chitinase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Introduction of a tryptophan side chain into subsite +1 enhances transglycosylation activity of a GH-18 chitinase from Arabidopsis thaliana, AtChiC.", "journal": "Glycobiology", "date": "2013-01", "authors": "Umemoto Naoyuki, Ohnuma Takayuki, Mizuhara Mamiko, Sato Hirokazu, Skriver Karen, Fukamizo Tamo", "evidence": [ { "database": "UniProtKB", "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862" } ], "reference": [ { "type": "PubMed", "id": "22936594", "url": "https://glygen.org/publication/PubMed/22936594" } ] } ], "crossref": [ { "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22936594", "url": "https://glygen.org/publication/PubMed/22936594", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "FTQTVQRRNPSVKTLLSIGG", "down_seq": "IADKTAYASMASNPTSRKSF", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "W", "comment": "Reduced activity toward glycol chitin, but enhanced transglycosylation reaction toward chitin oligosaccharides (GlcNAc)4, (GlcNAc)5 and (GlcNAc)6.", "evidence": [ { "database": "UniProtKB", "id": "O81862", "url": "https://www.uniprot.org/uniprotkb/O81862" }, { "database": "PubMed", "id": "22936594", "url": "https://glygen.org/publication/PubMed/22936594" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "307", "end_pos": "307" }, { "start_pos": "327", "end_pos": "327" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "140", "end_pos": "140" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93ZM9-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "Q93ZM9-1", "length": 197, "uniprot_id": "TIF9_ARATH", "protein_name": "Protein TIFY 9", "refseq_ac": "NP_001154713", "refseq_name": "jasmonate-zim-domain protein 10", "gene_name": "JAZ10; TIFY9", "gene_names_uniprotkb": "JAZ10; TIFY9; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9", "gene_names_refseq": "AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9; jasmonate-zim-domain protein 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10.", "journal": "Plant physiology", "date": "2013-06", "authors": "Moreno Javier E, Shyu Christine, Campos Marcelo L, Patel Lalita C, Chung Hoo Sun, Yao Jian, He Sheng Yang, Howe Gregg A", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "reference": [ { "type": "PubMed", "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853" } ] }, { "title": "A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis.", "journal": "The Plant cell", "date": "2009-01", "authors": "Chung Hoo Sun, Howe Gregg A", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "reference": [ { "type": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "crossref": [ { "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PVHASLARSSTELVSGTVPM", "down_seq": "IFYNGSVSVFQVSRNKAGEI", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on dimerization and interactions with TIFY11B/JAZ6 and AFPH2/NINJA.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853" }, { "database": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "32", "end_pos": "33" }, { "start_pos": "32", "end_pos": "34" }, { "start_pos": "33", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q93ZM9-1.107.107", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q93ZM9-1.108.108", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q93ZM9-1.109.109", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q93ZM9-1.111.111", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93ZM9-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "Q93ZM9-1", "length": 197, "uniprot_id": "TIF9_ARATH", "protein_name": "Protein TIFY 9", "refseq_ac": "NP_001154713", "refseq_name": "jasmonate-zim-domain protein 10", "gene_name": "JAZ10; TIFY9", "gene_names_uniprotkb": "JAZ10; TIFY9; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9", "gene_names_refseq": "AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9; jasmonate-zim-domain protein 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10.", "journal": "Plant physiology", "date": "2013-06", "authors": "Moreno Javier E, Shyu Christine, Campos Marcelo L, Patel Lalita C, Chung Hoo Sun, Yao Jian, He Sheng Yang, Howe Gregg A", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "reference": [ { "type": "PubMed", "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853" } ] }, { "title": "A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis.", "journal": "The Plant cell", "date": "2009-01", "authors": "Chung Hoo Sun, Howe Gregg A", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "reference": [ { "type": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "crossref": [ { "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "VHASLARSSTELVSGTVPMT", "down_seq": "FYNGSVSVFQVSRNKAGEIM", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "A", "comment": "Loss of dimerization, loss of interaction with TIFY11B/JAZ6 and strongly decreased interaction with AFPH2/NINJA.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853" }, { "database": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "32", "end_pos": "33" }, { "start_pos": "32", "end_pos": "34" }, { "start_pos": "33", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q93ZM9-1.106.106", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q93ZM9-1.108.108", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q93ZM9-1.109.109", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q93ZM9-1.111.111", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93ZM9-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "Q93ZM9-1", "length": 197, "uniprot_id": "TIF9_ARATH", "protein_name": "Protein TIFY 9", "refseq_ac": "NP_001154713", "refseq_name": "jasmonate-zim-domain protein 10", "gene_name": "JAZ10; TIFY9", "gene_names_uniprotkb": "JAZ10; TIFY9; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9", "gene_names_refseq": "AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9; jasmonate-zim-domain protein 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis.", "journal": "The Plant cell", "date": "2009-01", "authors": "Chung Hoo Sun, Howe Gregg A", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "reference": [ { "type": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "crossref": [ { "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "HASLARSSTELVSGTVPMTI", "down_seq": "YNGSVSVFQVSRNKAGEIMK", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "No effect on dimerization and interaction with TIFY11B/JAZ6.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "32", "end_pos": "33" }, { "start_pos": "32", "end_pos": "34" }, { "start_pos": "33", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q93ZM9-1.106.106", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q93ZM9-1.107.107", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q93ZM9-1.109.109", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q93ZM9-1.111.111", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93ZM9-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "Q93ZM9-1", "length": 197, "uniprot_id": "TIF9_ARATH", "protein_name": "Protein TIFY 9", "refseq_ac": "NP_001154713", "refseq_name": "jasmonate-zim-domain protein 10", "gene_name": "JAZ10; TIFY9", "gene_names_uniprotkb": "JAZ10; TIFY9; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9", "gene_names_refseq": "AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9; jasmonate-zim-domain protein 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis.", "journal": "The Plant cell", "date": "2009-01", "authors": "Chung Hoo Sun, Howe Gregg A", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "reference": [ { "type": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "crossref": [ { "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ASLARSSTELVSGTVPMTIF", "down_seq": "NGSVSVFQVSRNKAGEIMKV", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "No effect on dimerization and interaction with TIFY11B/JAZ6.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "32", "end_pos": "33" }, { "start_pos": "32", "end_pos": "34" }, { "start_pos": "33", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q93ZM9-1.106.106", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q93ZM9-1.107.107", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q93ZM9-1.108.108", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q93ZM9-1.111.111", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93ZM9-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "Q93ZM9-1", "length": 197, "uniprot_id": "TIF9_ARATH", "protein_name": "Protein TIFY 9", "refseq_ac": "NP_001154713", "refseq_name": "jasmonate-zim-domain protein 10", "gene_name": "JAZ10; TIFY9", "gene_names_uniprotkb": "JAZ10; TIFY9; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9", "gene_names_refseq": "AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9; jasmonate-zim-domain protein 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis.", "journal": "The Plant cell", "date": "2009-01", "authors": "Chung Hoo Sun, Howe Gregg A", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "reference": [ { "type": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "crossref": [ { "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LARSSTELVSGTVPMTIFYN", "down_seq": "SVSVFQVSRNKAGEIMKVAN", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of dimerization and loss of interaction with TIFY11B/JAZ6.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "19151223", "url": "https://glygen.org/publication/PubMed/19151223" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "32", "end_pos": "33" }, { "start_pos": "32", "end_pos": "34" }, { "start_pos": "33", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q93ZM9-1.106.106", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q93ZM9-1.107.107", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q93ZM9-1.108.108", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q93ZM9-1.109.109", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93ZM9-1.32.33", "start_pos": 32, "end_pos": 33, "uniprot_canonical_ac": "Q93ZM9-1", "length": 197, "uniprot_id": "TIF9_ARATH", "protein_name": "Protein TIFY 9", "refseq_ac": "NP_001154713", "refseq_name": "jasmonate-zim-domain protein 10", "gene_name": "JAZ10; TIFY9", "gene_names_uniprotkb": "JAZ10; TIFY9; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9", "gene_names_refseq": "AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9; jasmonate-zim-domain protein 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "RR", "start_aa": "R", "up_seq": "GLEKKQTNNAPKPKFQKFLD", "down_seq": "RSFRDIQGAISKIDPEIIKS", "mutagenesis": [ { "sequence_org": "RR", "sequence_mut": "AA", "comment": "In isoform 3; no effect on dimerization or interaction with MYC2.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "32", "end_pos": "33" }, { "start_pos": "32", "end_pos": "34" }, { "start_pos": "33", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q93ZM9-1.32.34", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "upstream", "id": "Q93ZM9-1.33.34", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q93ZM9-1.32.34", "start_pos": 32, "end_pos": 34, "uniprot_canonical_ac": "Q93ZM9-1", "length": 197, "uniprot_id": "TIF9_ARATH", "protein_name": "Protein TIFY 9", "refseq_ac": "NP_001154713", "refseq_name": "jasmonate-zim-domain protein 10", "gene_name": "JAZ10; TIFY9", "gene_names_uniprotkb": "JAZ10; TIFY9; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9", "gene_names_refseq": "AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9; jasmonate-zim-domain protein 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10.", "journal": "Plant physiology", "date": "2013-06", "authors": "Moreno Javier E, Shyu Christine, Campos Marcelo L, Patel Lalita C, Chung Hoo Sun, Yao Jian, He Sheng Yang, Howe Gregg A", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "reference": [ { "type": "PubMed", "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853" } ] } ], "crossref": [ { "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "RRR", "start_aa": "R", "up_seq": "GLEKKQTNNAPKPKFQKFLD", "down_seq": "SFRDIQGAISKIDPEIIKSL", "mutagenesis": [ { "sequence_org": "RRR", "sequence_mut": "AAA", "comment": "In isoform 3; no effect on dimerization but loss of interaction with MYC2. In isoform 1; no effect on dimerization or interaction with MYC2.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853" } ] }, { "sequence_org": "RRR", "sequence_mut": "ARA", "comment": "In isoform 3; no effect on dimerization or interaction with MYC2.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "23632853", "url": "https://glygen.org/publication/PubMed/23632853" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "32", "end_pos": "33" }, { "start_pos": "32", "end_pos": "34" }, { "start_pos": "33", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q93ZM9-1.32.33", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q93ZM9-1.33.34", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93ZM9-1.33.34", "start_pos": 33, "end_pos": 34, "uniprot_canonical_ac": "Q93ZM9-1", "length": 197, "uniprot_id": "TIF9_ARATH", "protein_name": "Protein TIFY 9", "refseq_ac": "NP_001154713", "refseq_name": "jasmonate-zim-domain protein 10", "gene_name": "JAZ10; TIFY9", "gene_names_uniprotkb": "JAZ10; TIFY9; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9", "gene_names_refseq": "AT5G13220; JAS1; JASMONATE-ASSOCIATED 1; JAZ10; T31B5.40; T31B5_40; TIFY 9; TIFY DOMAIN PROTEIN 9; TIFY9; jasmonate-zim-domain protein 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "RR", "start_aa": "R", "up_seq": "LEKKQTNNAPKPKFQKFLDR", "down_seq": "SFRDIQGAISKIDPEIIKSL", "mutagenesis": [ { "sequence_org": "RR", "sequence_mut": "AA", "comment": "In isoform 3; no effect on dimerization or interaction with MYC2.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "32", "end_pos": "33" }, { "start_pos": "32", "end_pos": "34" }, { "start_pos": "33", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "downstream", "id": "Q93ZM9-1.32.33", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q93ZM9-1.32.34", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9FN69-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "Q9FN69-1", "length": 637, "uniprot_id": "GL3_ARATH", "protein_name": "Transcription factor GLABRA 3", "refseq_ac": "NP_680372", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "GL3", "gene_names_uniprotkb": "GL3; BHLH1; EN31; GLABRA 3; GLABROUS 3; MYC6.2; MYC6; SST", "gene_names_refseq": "GL3; GLABRA 3; GLABROUS 3; MYC6.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FN69", "url": "https://www.uniprot.org/uniprotkb/Q9FN69" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A contradictory GLABRA3 allele helps define gene interactions controlling trichome development in Arabidopsis.", "journal": "Development (Cambridge, England)", "date": "2003-12", "authors": "Esch Jeffrey J, Chen Margaret, Sanders Mark, Hillestad Matthew, Ndkium Sampson, Idelkope Brian, Neizer James, Marks M David", "evidence": [ { "database": "UniProtKB", "id": "Q9FN69", "url": "https://www.uniprot.org/uniprotkb/Q9FN69" } ], "reference": [ { "type": "PubMed", "id": "14561633", "url": "https://glygen.org/publication/PubMed/14561633" } ] } ], "crossref": [ { "id": "Q9FN69", "url": "https://www.uniprot.org/uniprotkb/Q9FN69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14561633", "url": "https://glygen.org/publication/PubMed/14561633", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "KTIQASEIKADQLGLRRSEQ", "down_seq": "SELYESLSVAESSSSGVAAG", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "F", "comment": "In gl3-sst; oddly shaped trichomes with more endoreplication, disturbed cell wall development and abnormal nuclear shape. Reduced interactions with MYB0/GL1 and TTG1.", "evidence": [ { "database": "UniProtKB", "id": "Q9FN69", "url": "https://www.uniprot.org/uniprotkb/Q9FN69" }, { "database": "PubMed", "id": "14561633", "url": "https://glygen.org/publication/PubMed/14561633" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51568-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "P51568-1", "length": 400, "uniprot_id": "AFC3_ARATH", "protein_name": "Serine/threonine-protein kinase AFC3", "refseq_ac": "NP_194992", "refseq_name": "Protein kinase superfamily protein", "gene_name": "AFC3; AME3", "gene_names_uniprotkb": "AFC3; AME3; AME3; F4D11.140; F4D11_140", "gene_names_refseq": "AME3; F4D11.140; F4D11_140", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51568", "url": "https://www.uniprot.org/uniprotkb/P51568" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P51568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51568" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P51568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51568", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MIANGFESMDKERVRKRPRM", "down_seq": "WDEAPAEPEAKRAVIKGHGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51568" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr21" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "47", "end_pos": "47" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P51568-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "P51568-1", "length": 400, "uniprot_id": "AFC3_ARATH", "protein_name": "Serine/threonine-protein kinase AFC3", "refseq_ac": "NP_194992", "refseq_name": "Protein kinase superfamily protein", "gene_name": "AFC3; AME3", "gene_names_uniprotkb": "AFC3; AME3; AME3; F4D11.140; F4D11_140", "gene_names_refseq": "AME3; F4D11.140; F4D11_140", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P51568", "url": "https://www.uniprot.org/uniprotkb/P51568" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P51568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51568" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P51568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51568", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEPEAKRAVIKGHGSDGRIL", "down_seq": "PPLRDDDRDGHYVFSLRDNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P51568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P51568" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "21", "end_pos": "21" }, { "start_pos": "47", "end_pos": "47" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81893-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "O81893-1", "length": 391, "uniprot_id": "ITPK2_ARATH", "protein_name": "Inositol-tetrakisphosphate 1-kinase 2", "refseq_ac": "NP_195103", "refseq_name": "Inositol 1,3,4-trisphosphate 5/6-kinase family protein", "gene_name": "ITPK2", "gene_names_uniprotkb": "ITPK2; 3; 6 kinase 2; T16L1.260; T16L1_260; inositol 1", "gene_names_refseq": "3; 4-trisphosphate 5/6 kinase 2; ITPK2; T16L1.260; T16L1_260; inositol 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81893", "url": "https://www.uniprot.org/uniprotkb/O81893" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81893", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "YQQKHPEVTVLDPPGSIQRI", "down_seq": "NRQSMLQGMADLKLSDCSGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81893" } ], "site_lbl": "Tyr165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O81893-1.169.169", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81893-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "O81893-1", "length": 391, "uniprot_id": "ITPK2_ARATH", "protein_name": "Inositol-tetrakisphosphate 1-kinase 2", "refseq_ac": "NP_195103", "refseq_name": "Inositol 1,3,4-trisphosphate 5/6-kinase family protein", "gene_name": "ITPK2", "gene_names_uniprotkb": "ITPK2; 3; 6 kinase 2; T16L1.260; T16L1_260; inositol 1", "gene_names_refseq": "3; 4-trisphosphate 5/6 kinase 2; ITPK2; T16L1.260; T16L1_260; inositol 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81893", "url": "https://www.uniprot.org/uniprotkb/O81893" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81893", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HPEVTVLDPPGSIQRIYNRQ", "down_seq": "MLQGMADLKLSDCSGSLFVP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81893" } ], "site_lbl": "Ser169" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "169", "end_pos": "169" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O81893-1.165.165", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P14713-1.276.276", "start_pos": 276, "end_pos": 276, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phytochromes function as thermosensors in Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "2016-11-18", "authors": "Jung Jae-Hoon, Domijan Mirela, Klose Cornelia, Biswas Surojit, Ezer Daphne, Gao Mingjun, Khattak Asif Khan, Box Mathew S, Charoensawan Varodom, Cortijo Sandra, Kumar Manoj, Grant Alastair, Locke James C W, Sch\u00e4fer Eberhard, Jaeger Katja E, Wigge Philip A", "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "reference": [ { "type": "PubMed", "id": "27789797", "url": "https://glygen.org/publication/PubMed/27789797" } ] }, { "title": "Photoactivated phytochromes interact with HEMERA and promote its accumulation to establish photomorphogenesis in Arabidopsis.", "journal": "Genes & development", "date": "2012-08-15", "authors": "Galv\u00e3o Rafaelo M, Li Meina, Kothadia Sonya M, Haskel Jonathan D, Decker Peter V, Van Buskirk Elise K, Chen Meng", "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "reference": [ { "type": "PubMed", "id": "22895253", "url": "https://glygen.org/publication/PubMed/22895253" } ] } ], "crossref": [ { "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27789797", "url": "https://glygen.org/publication/PubMed/27789797", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22895253", "url": "https://glygen.org/publication/PubMed/22895253", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LCDTVVESVRDLTGYDRVMV", "down_seq": "KFHEDEHGEVVAESKRDDLE", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "H", "comment": "In YHB; constitutively active and stronger interaction with PTAC12/HMR/PAP5 in the dark. Constitutive warm-temperature response with the warm-temperature transcriptome derepressed at low temperatures.", "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" }, { "database": "PubMed", "id": "27789797", "url": "https://glygen.org/publication/PubMed/27789797" }, { "database": "PubMed", "id": "22895253", "url": "https://glygen.org/publication/PubMed/22895253" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.1163.1163", "start_pos": 1163, "end_pos": 1163, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FLIILELPVPRKRPLSTASG", "down_seq": "GDMMLMMPY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1163" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VGGSGGGRGGGRGGEEEPSS", "down_seq": "HTPNNRRGGEQAQSSGTKSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P14713-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P14713-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P14713-1.44.44", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MV", "down_seq": "GVGGSGGGRGGGRGGEEEPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser3" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P14713-1.8.8", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEPSSSHTPNNRRGGEQAQS", "down_seq": "GTKSLRPRSNTESMSKAIQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser40" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P14713-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P14713-1.44.44", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSHTPNNRRGGEQAQSSGTK", "down_seq": "LRPRSNTESMSKAIQQYTVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser44" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P14713-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P14713-1.40.40", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSKAIQQYTVDARLHAVFEQ", "down_seq": "GESGKSFDYSQSLKTTTYGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser74" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P14713-1.80.80", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P14713-1.86.86", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QYTVDARLHAVFEQSGESGK", "down_seq": "FDYSQSLKTTTYGSSVPEQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser80" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P14713-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P14713-1.86.86", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLHAVFEQSGESGKSFDYSQ", "down_seq": "LKTTTYGSSVPEQQITAYLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser86" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P14713-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P14713-1.80.80", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14713-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "P14713-1", "length": 1172, "uniprot_id": "PHYB_ARATH", "protein_name": "Phytochrome B", "refseq_ac": "NP_179469", "refseq_name": "phytochrome B", "gene_name": "PHYB", "gene_names_uniprotkb": "PHYB; HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYTOCHROME B; phytochrome B", "gene_names_refseq": "HY3; MSF3.17; MSF3_17; OOP1; OUT OF PHASE 1; PHYB; PHYTOCHROME B; phytochrome B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14713", "url": "https://www.uniprot.org/uniprotkb/P14713" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MVSGVGG", "down_seq": "GGGRGGGRGGEEEPSSSHTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14713", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14713" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "276", "end_pos": "276" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1163", "end_pos": "1163" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P14713-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P14713-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93VD3-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MASRTTPSRS", "down_seq": "PSRSTPSGSSSGGRTRVGKY", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr11", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q93VD3-1.16.16", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q93VD3-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q93VD3-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MASRTTPSRSTPSRS", "down_seq": "PSGSSSGGRTRVGKYELGRT", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr16", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q93VD3-1.11.11", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q93VD3-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q93VD3-1.199.199", "start_pos": 199, "end_pos": 199, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.", "journal": "Cell", "date": "2006-06-30", "authors": "Xu Jiang, Li Hao-Dong, Chen Li-Qing, Wang Yi, Liu Li-Li, He Liu, Wu Wei-Hua", "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "reference": [ { "type": "PubMed", "id": "16814720", "url": "https://glygen.org/publication/PubMed/16814720" } ] } ], "crossref": [ { "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16814720", "url": "https://glygen.org/publication/PubMed/16814720", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "PQQVREDGLLHTTCGTPNYV", "down_seq": "PEVINNKGYDGAKADLWSCG", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "V", "comment": "In lks1-1; enhanced sensitivity to low K(+).", "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" }, { "database": "PubMed", "id": "16814720", "url": "https://glygen.org/publication/PubMed/16814720" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q93VD3-1.190.190", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q93VD3-1.191.191", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93VD3-1.447.447", "start_pos": 447, "end_pos": 447, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.", "journal": "Cell", "date": "2006-06-30", "authors": "Xu Jiang, Li Hao-Dong, Chen Li-Qing, Wang Yi, Liu Li-Li, He Liu, Wu Wei-Hua", "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "reference": [ { "type": "PubMed", "id": "16814720", "url": "https://glygen.org/publication/PubMed/16814720" } ] } ], "crossref": [ { "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16814720", "url": "https://glygen.org/publication/PubMed/16814720", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "RKSGGDTLEFHKFYKNLTTG", "down_seq": "KDIVWKTIDEEKEEGTDGGG", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "F", "comment": "In lks1-2; enhanced sensitivity to low K(+).", "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" }, { "database": "PubMed", "id": "16814720", "url": "https://glygen.org/publication/PubMed/16814720" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93VD3-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KPENLLLDANGALKVSDFGL", "down_seq": "ALPQQVREDGLLHTTCGTPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "site_lbl": "Ser176" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q93VD3-1.190.190", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q93VD3-1.191.191", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q93VD3-1.190.190", "start_pos": 190, "end_pos": 190, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VSDFGLSALPQQVREDGLLH", "down_seq": "TCGTPNYVAPEVINNKGYDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" }, { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr190" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q93VD3-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q93VD3-1.191.191", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q93VD3-1.199.199", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93VD3-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SDFGLSALPQQVREDGLLHT", "down_seq": "CGTPNYVAPEVINNKGYDGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr191" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q93VD3-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q93VD3-1.190.190", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q93VD3-1.199.199", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93VD3-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TPSRSTPSRSTPSGSSSGGR", "down_seq": "RVGKYELGRTLGEGTFAKVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" } ], "site_lbl": "Thr26" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q93VD3-1.11.11", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q93VD3-1.16.16", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q93VD3-1.41.41", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q93VD3-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "Q93VD3-1", "length": 482, "uniprot_id": "CIPKN_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "refseq_ac": "NP_564353", "refseq_name": "CBL-interacting protein kinase 23", "gene_name": "CIPK23", "gene_names_uniprotkb": "CIPK23; ATCIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SOS2-like protein kinase 17; SnRK3.23", "gene_names_refseq": "ATCIPK23; CBL-interacting protein kinase 23; CIPK23; F12P21.6; F12P21_6; LKS1; LOW-K+-SENSITIVE 1; PKS17; SNF1-RELATED PROTEIN KINASE 3.23; SOS2-like protein kinase 17; SnRK3.23", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VD3", "url": "https://www.uniprot.org/uniprotkb/Q93VD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSGGRTRVGKYELGRTLGEG", "down_seq": "FAKVKFARNVENGDNVAIKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93VD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93VD3" } ], "site_lbl": "Thr41" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "16", "end_pos": "16" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "199", "end_pos": "199" }, { "start_pos": "447", "end_pos": "447" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q93VD3-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P42730-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "P42730-1", "length": 911, "uniprot_id": "CLPB1_ARATH", "protein_name": "Chaperone protein ClpB1", "refseq_ac": "NP_565083", "refseq_name": "heat shock protein 101", "gene_name": "CLPB1; HSP101", "gene_names_uniprotkb": "CLPB1; HSP101; ATHSP101; DLT1; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "gene_names_refseq": "ATHSP101; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Interplay between heat shock proteins HSP101 and HSA32 prolongs heat acclimation memory posttranscriptionally in Arabidopsis.", "journal": "Plant physiology", "date": "2013-04", "authors": "Wu Ting-ying, Juan Yu-ting, Hsu Yang-hsin, Wu Sze-hsien, Liao Hsiu-ting, Fung Raymond W M, Charng Yee-yung", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "reference": [ { "type": "PubMed", "id": "23439916", "url": "https://glygen.org/publication/PubMed/23439916" } ] } ], "crossref": [ { "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23439916", "url": "https://glygen.org/publication/PubMed/23439916", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "TIATAHELAVNAGHAQFTPL", "down_seq": "LAGALISDPTGIFPQAISSA", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "Y", "comment": "In dlt1-2; normal growth and development under nonstress conditions. Impaired chaperone activity and thermotolerance function, but normal positive regulation of HSA32 during recovery after heat treatment.", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" }, { "database": "PubMed", "id": "23439916", "url": "https://glygen.org/publication/PubMed/23439916" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "637", "end_pos": "637" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "815", "end_pos": "815" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42730-1.499.499", "start_pos": 499, "end_pos": 499, "uniprot_canonical_ac": "P42730-1", "length": 911, "uniprot_id": "CLPB1_ARATH", "protein_name": "Chaperone protein ClpB1", "refseq_ac": "NP_565083", "refseq_name": "heat shock protein 101", "gene_name": "CLPB1; HSP101", "gene_names_uniprotkb": "CLPB1; HSP101; ATHSP101; DLT1; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "gene_names_refseq": "ATHSP101; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic analysis reveals domain interactions of Arabidopsis Hsp100/ClpB and cooperation with the small heat shock protein chaperone system.", "journal": "The Plant cell", "date": "2005-02", "authors": "Lee Ung, Wie Chris, Escobar Mindy, Williams Ben, Hong Suk-Whan, Vierling Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "reference": [ { "type": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] } ], "crossref": [ { "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "KREELMFSLQEAERRYDLAR", "down_seq": "ADLRYGAIQEVESAIAQLEG", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In hot1-4; reduced basal thermotolerance and unable to acquire thermotolerance.", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" }, { "database": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "637", "end_pos": "637" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "815", "end_pos": "815" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P42730-1.509.509", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42730-1.509.509", "start_pos": 509, "end_pos": 509, "uniprot_canonical_ac": "P42730-1", "length": 911, "uniprot_id": "CLPB1_ARATH", "protein_name": "Chaperone protein ClpB1", "refseq_ac": "NP_565083", "refseq_name": "heat shock protein 101", "gene_name": "CLPB1; HSP101", "gene_names_uniprotkb": "CLPB1; HSP101; ATHSP101; DLT1; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "gene_names_refseq": "ATHSP101; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic analysis reveals domain interactions of Arabidopsis Hsp100/ClpB and cooperation with the small heat shock protein chaperone system.", "journal": "The Plant cell", "date": "2005-02", "authors": "Lee Ung, Wie Chris, Escobar Mindy, Williams Ben, Hong Suk-Whan, Vierling Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "reference": [ { "type": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] } ], "crossref": [ { "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "EAERRYDLARAADLRYGAIQ", "down_seq": "VESAIAQLEGTSSEENVMLT", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In hot1-6; reduced ability to acquire thermotolerance.", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" }, { "database": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "637", "end_pos": "637" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "815", "end_pos": "815" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P42730-1.499.499", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42730-1.599.599", "start_pos": 599, "end_pos": 599, "uniprot_canonical_ac": "P42730-1", "length": 911, "uniprot_id": "CLPB1_ARATH", "protein_name": "Chaperone protein ClpB1", "refseq_ac": "NP_565083", "refseq_name": "heat shock protein 101", "gene_name": "CLPB1; HSP101", "gene_names_uniprotkb": "CLPB1; HSP101; ATHSP101; DLT1; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "gene_names_refseq": "ATHSP101; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Interplay between heat shock proteins HSP101 and HSA32 prolongs heat acclimation memory posttranscriptionally in Arabidopsis.", "journal": "Plant physiology", "date": "2013-04", "authors": "Wu Ting-ying, Juan Yu-ting, Hsu Yang-hsin, Wu Sze-hsien, Liao Hsiu-ting, Fung Raymond W M, Charng Yee-yung", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "reference": [ { "type": "PubMed", "id": "23439916", "url": "https://glygen.org/publication/PubMed/23439916" } ] } ], "crossref": [ { "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23439916", "url": "https://glygen.org/publication/PubMed/23439916", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NAVSEAILRSRAGLGRPQQP", "down_seq": "GSFLFLGPTGVGKTELAKAL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "In dlt1-1; normal growth and development under nonstress conditions, and normal chaperone activity and thermotolerance function. Compromised positive regulation of HSA32 during recovery after heat treatment.", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" }, { "database": "PubMed", "id": "23439916", "url": "https://glygen.org/publication/PubMed/23439916" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "637", "end_pos": "637" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "815", "end_pos": "815" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42730-1.637.637", "start_pos": 637, "end_pos": 637, "uniprot_canonical_ac": "P42730-1", "length": 911, "uniprot_id": "CLPB1_ARATH", "protein_name": "Chaperone protein ClpB1", "refseq_ac": "NP_565083", "refseq_name": "heat shock protein 101", "gene_name": "CLPB1; HSP101", "gene_names_uniprotkb": "CLPB1; HSP101; ATHSP101; DLT1; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "gene_names_refseq": "ATHSP101; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic analysis reveals domain interactions of Arabidopsis Hsp100/ClpB and cooperation with the small heat shock protein chaperone system.", "journal": "The Plant cell", "date": "2005-02", "authors": "Lee Ung, Wie Chris, Escobar Mindy, Williams Ben, Hong Suk-Whan, Vierling Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "reference": [ { "type": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] }, { "title": "Mutants of Arabidopsis thaliana defective in the acquisition of tolerance to high temperature stress.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000-04-11", "authors": "Hong S W, Vierling E", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "reference": [ { "type": "PubMed", "id": "10760305", "url": "https://glygen.org/publication/PubMed/10760305" } ] } ], "crossref": [ { "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10760305", "url": "https://glygen.org/publication/PubMed/10760305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "KALAEQLFDDENLLVRIDMS", "down_seq": "YMEQHSVSRLIGAPPGYVGH", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In hot1-1; greatly reduced basal thermotolerance and unable to acquire thermotolerance.", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" }, { "database": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" }, { "database": "PubMed", "id": "10760305", "url": "https://glygen.org/publication/PubMed/10760305" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "637", "end_pos": "637" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "815", "end_pos": "815" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42730-1.706.706", "start_pos": 706, "end_pos": 706, "uniprot_canonical_ac": "P42730-1", "length": 911, "uniprot_id": "CLPB1_ARATH", "protein_name": "Chaperone protein ClpB1", "refseq_ac": "NP_565083", "refseq_name": "heat shock protein 101", "gene_name": "CLPB1; HSP101", "gene_names_uniprotkb": "CLPB1; HSP101; ATHSP101; DLT1; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "gene_names_refseq": "ATHSP101; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic analysis reveals domain interactions of Arabidopsis Hsp100/ClpB and cooperation with the small heat shock protein chaperone system.", "journal": "The Plant cell", "date": "2005-02", "authors": "Lee Ung, Wie Chris, Escobar Mindy, Williams Ben, Hong Suk-Whan, Vierling Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "reference": [ { "type": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] } ], "crossref": [ { "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "AVFNTLLQVLDDGRLTDGQG", "down_seq": "TVDFRNSVIIMTSNLGAEHL", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "K", "comment": "In hot1-5; unable to acquire thermotolerance.", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" }, { "database": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "637", "end_pos": "637" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "815", "end_pos": "815" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42730-1.815.815", "start_pos": 815, "end_pos": 815, "uniprot_canonical_ac": "P42730-1", "length": 911, "uniprot_id": "CLPB1_ARATH", "protein_name": "Chaperone protein ClpB1", "refseq_ac": "NP_565083", "refseq_name": "heat shock protein 101", "gene_name": "CLPB1; HSP101", "gene_names_uniprotkb": "CLPB1; HSP101; ATHSP101; DLT1; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "gene_names_refseq": "ATHSP101; F1O17.2; F1O17_2; HEAT SHOCK PROTEIN ATHSP101; HOT1; HSP101; heat shock protein 101", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic analysis reveals domain interactions of Arabidopsis Hsp100/ClpB and cooperation with the small heat shock protein chaperone system.", "journal": "The Plant cell", "date": "2005-02", "authors": "Lee Ung, Wie Chris, Escobar Mindy, Williams Ben, Hong Suk-Whan, Vierling Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" } ], "reference": [ { "type": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] } ], "crossref": [ { "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LAVTDAALDYILAESYDPVY", "down_seq": "ARPIRRWMEKKVVTELSKMV", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In hot1-7; reduced ability to acquire thermotolerance.", "evidence": [ { "database": "UniProtKB", "id": "P42730", "url": "https://www.uniprot.org/uniprotkb/P42730" }, { "database": "PubMed", "id": "15659638", "url": "https://glygen.org/publication/PubMed/15659638" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "637", "end_pos": "637" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "815", "end_pos": "815" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WNX9-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q0WNX9-1", "length": 196, "uniprot_id": "KRP6_ARATH", "protein_name": "Cyclin-dependent kinase inhibitor 6", "refseq_ac": "NP_188546", "refseq_name": "KIP-related protein 6", "gene_name": "KRP6", "gene_names_uniprotkb": "KRP6; ACK1; ARABIDOPSIS CDK INHIBITOR 1; AtKRP6; ICK4; KIP-RELATED PROTEIN 6; KIP-related protein 6; MVI11.5", "gene_names_refseq": "ACK1; ARABIDOPSIS CDK INHIBITOR 1; AtKRP6; ICK4; KIP-RELATED PROTEIN 6; KIP-related protein 6; KRP6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation of p27(KIP1) homologs KRP6 and 7 by SNF1-related protein kinase-1 links plant energy homeostasis and cell proliferation.", "journal": "The Plant journal : for cell and molecular biology", "date": "2013-08", "authors": "Gu\u00e9rinier Thomas, Millan Laurine, Crozet Pierre, Oury C\u00e9line, Rey Fran\u00e7ois, Valot Benoit, Mathieu Chantal, Vidal Jean, Hodges Michael, Thomas Martine, Glab Nathalie", "evidence": [ { "database": "UniProtKB", "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9" }, { "database": "iPTMnet", "id": "Q0WNX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNX9" } ], "reference": [ { "type": "PubMed", "id": "23617622", "url": "https://glygen.org/publication/PubMed/23617622" } ] } ], "crossref": [ { "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23617622", "url": "https://glygen.org/publication/PubMed/23617622", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WNX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNX9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TEMESSSATKRKQPGVRKTP", "down_seq": "AAEIEDLFSELESQDDKKKQ", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes its phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9" }, { "database": "PubMed", "id": "23617622", "url": "https://glygen.org/publication/PubMed/23617622" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Abolishes its phosphorylation. Reduces its ability to interact with CYCD3-1.", "evidence": [ { "database": "UniProtKB", "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9" }, { "database": "PubMed", "id": "23617622", "url": "https://glygen.org/publication/PubMed/23617622" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by KIN10", "evidence": [ { "database": "UniProtKB", "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9" }, { "database": "iPTMnet", "id": "Q0WNX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WNX9" }, { "database": "PubMed", "id": "23617622", "url": "https://glygen.org/publication/PubMed/23617622" } ], "site_lbl": "Thr152" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "152", "end_pos": "152" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.148.154", "start_pos": 148, "end_pos": 154, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Pseudomonas syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4, from Arabidopsis membranes to block RPM1 activation.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005-05-03", "authors": "Kim Han-Suk, Desveaux Darrell, Singer Alex U, Patel Priyesh, Sondek John, Dangl Jeffery L", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "VPKFGDW", "start_aa": "V", "up_seq": "KSRPKPTNLRADESPEKVTV", "down_seq": "DENNPSSADGYTHIFNKVRE", "mutagenesis": [ { "sequence_org": "VPKFGDW", "sequence_mut": "APKAANA", "comment": "Loss of RIN4 degradation, but no alteration of membrane localization.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GYN5-1.141.141", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GYN5-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GYN5-1.151.151", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GYN5-1.160.160", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8GYN5-1.166.166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Activation of a phytopathogenic bacterial effector protein by a eukaryotic cyclophilin.", "journal": "Science (New York, N.Y.)", "date": "2005-04-22", "authors": "Coaker Gitta, Falick Arnold, Staskawicz Brian", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "15746386", "url": "https://glygen.org/publication/PubMed/15746386" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15746386", "url": "https://glygen.org/publication/PubMed/15746386", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "PKPTNLRADESPEKVTVVPK", "down_seq": "GDWDENNPSSADGYTHIFNK", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "No cleavage at position 152-153 by AvrRpt2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "15746386", "url": "https://glygen.org/publication/PubMed/15746386" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8GYN5-1.141.141", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GYN5-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GYN5-1.148.154", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GYN5-1.160.160", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8GYN5-1.166.166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A receptor-like cytoplasmic kinase phosphorylates the host target RIN4, leading to the activation of a plant innate immune receptor.", "journal": "Cell host & microbe", "date": "2011-02-17", "authors": "Liu Jun, Elmore James Mitch, Lin Zuh-Jyh Daniel, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] }, { "title": "Phosphorylation of the Plant Immune Regulator RPM1-INTERACTING PROTEIN4 Enhances Plant Plasma Membrane H\u207a-ATPase Activity and Inhibits Flagellin-Triggered Immune Responses in Arabidopsis.", "journal": "The Plant cell", "date": "2015-07", "authors": "Lee DongHyuk, Bourdais Gildas, Yu Gang, Robatzek Silke, Coaker Gitta", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESPEKVTVVPKFGDWDENNP", "down_seq": "SADGYTHIFNKVREERSSGA", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation by RIPK; when associated with A-21 and A-166.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Induction of RPM1 activation; when associated with D-21 and D-166.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070" } ], "site_lbl": "Ser160" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GYN5-1.141.141", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q8GYN5-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GYN5-1.148.154", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8GYN5-1.151.151", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GYN5-1.166.166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A receptor-like cytoplasmic kinase phosphorylates the host target RIN4, leading to the activation of a plant innate immune receptor.", "journal": "Cell host & microbe", "date": "2011-02-17", "authors": "Liu Jun, Elmore James Mitch, Lin Zuh-Jyh Daniel, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Specific threonine phosphorylation of a host target by two unrelated type III effectors activates a host innate immune receptor in plants.", "journal": "Cell host & microbe", "date": "2011-02-17", "authors": "Chung Eui-Hwan, da Cunha Luis, Wu Ai-Jiuan, Gao Zhiyong, Cherkis Karen, Afzal Ahmed J, Mackey David, Dangl Jeffery L", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "21320695", "url": "https://glygen.org/publication/PubMed/21320695" } ] }, { "title": "Proline isomerization of the immune receptor-interacting protein RIN4 by a cyclophilin inhibits effector-triggered immunity in Arabidopsis.", "journal": "Cell host & microbe", "date": "2014-10-08", "authors": "Li Meng, Ma Xiqing, Chiang Yi-Hsuan, Yadeta Koste A, Ding Pengfei, Dong Liansai, Zhao Yan, Li Xiuming, Yu Yufei, Zhang Ling, Shen Qian-Hua, Xia Bin, Coaker Gitta, Liu Dong, Zhou Jian-Min", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25299333", "url": "https://glygen.org/publication/PubMed/25299333" } ] }, { "title": "Phosphorylation of the Plant Immune Regulator RPM1-INTERACTING PROTEIN4 Enhances Plant Plasma Membrane H\u207a-ATPase Activity and Inhibits Flagellin-Triggered Immune Responses in Arabidopsis.", "journal": "The Plant cell", "date": "2015-07", "authors": "Lee DongHyuk, Bourdais Gildas, Yu Gang, Robatzek Silke, Coaker Gitta", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070" } ] }, { "title": "AvrRpm1 Functions as an ADP-Ribosyl Transferase to Modify NOI-domain Containing Proteins, Including Arabidopsis and Soybean RPM1-interacting Protein 4.", "journal": "The Plant cell", "date": "2019-09-23", "authors": "Redditt Thomas J, Chung Eui-Hwan, Zand Karimi Hana, Rodibaugh Natalie, Zhang Yixiang, Trinidad Jonathan C, Kim Jin Hee, Zhou Qian, Shen Mingzhe, Dangl Jeffery L, Mackey David M, Innes Roger W", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "31548257", "url": "https://glygen.org/publication/PubMed/31548257" } ] }, { "title": "A conserved glutamate residue in RPM1-INTERACTING PROTEIN4 is ADP-ribosylated by the Pseudomonas effector AvrRpm2 to activate RPM1-mediated plant resistance.", "journal": "The Plant cell", "date": "2022-11-29", "authors": "Yoon Minsoo, Middleditch Martin J, Rikkerink Erik H A", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "36130293", "url": "https://glygen.org/publication/PubMed/36130293" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21320695", "url": "https://glygen.org/publication/PubMed/21320695", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25299333", "url": "https://glygen.org/publication/PubMed/25299333", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070", "database": "PubMed", "categories": [ "Other" ] }, { "id": "31548257", "url": "https://glygen.org/publication/PubMed/31548257", "database": "PubMed", "categories": [ "Other" ] }, { "id": "36130293", "url": "https://glygen.org/publication/PubMed/36130293", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TVVPKFGDWDENNPSSADGY", "down_seq": "HIFNKVREERSSGANVSGSS", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of phosphorylation by RIPK; when associated with A-21 and A-166.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Induction of RPM1 activation; when associated with D-21 and D-166.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "21320695", "url": "https://glygen.org/publication/PubMed/21320695" }, { "database": "PubMed", "id": "25299333", "url": "https://glygen.org/publication/PubMed/25299333" }, { "database": "PubMed", "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070" }, { "database": "PubMed", "id": "31548257", "url": "https://glygen.org/publication/PubMed/31548257" }, { "database": "PubMed", "id": "36130293", "url": "https://glygen.org/publication/PubMed/36130293" } ], "site_lbl": "Thr166" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8GYN5-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q8GYN5-1.148.154", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q8GYN5-1.151.151", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GYN5-1.160.160", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8GYN5-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8GYN5-1.185.185", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8GYN5-1.186.186", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.203.205", "start_pos": 203, "end_pos": 205, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Pseudomonas syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4, from Arabidopsis membranes to block RPM1 activation.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005-05-03", "authors": "Kim Han-Suk, Desveaux Darrell, Singer Alex U, Patel Priyesh, Sondek John, Dangl Jeffery L", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "CCC", "start_aa": "C", "up_seq": "SGSSRTPTHQSSRNPNNTSS", "down_seq": "FGFGGK", "mutagenesis": [ { "sequence_org": "CCC", "sequence_mut": "AAA", "comment": "Loss of membrane association.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8GYN5-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q8GYN5-1.185.185", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q8GYN5-1.186.186", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q8GYN5-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q8GYN5-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8GYN5-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A receptor-like cytoplasmic kinase phosphorylates the host target RIN4, leading to the activation of a plant innate immune receptor.", "journal": "Cell host & microbe", "date": "2011-02-17", "authors": "Liu Jun, Elmore James Mitch, Lin Zuh-Jyh Daniel, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Phosphorylation of the Plant Immune Regulator RPM1-INTERACTING PROTEIN4 Enhances Plant Plasma Membrane H\u207a-ATPase Activity and Inhibits Flagellin-Triggered Immune Responses in Arabidopsis.", "journal": "The Plant cell", "date": "2015-07", "authors": "Lee DongHyuk, Bourdais Gildas, Yu Gang, Robatzek Silke, Coaker Gitta", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MARSNVPKFGNWEAEENVPY", "down_seq": "AYFDKARKTRAPGSKIMNPN", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of phosphorylation by RIPK; when associated with A-160 and A-166.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Induction of RPM1 activation; when associated with D-160 and D-166.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "21320696", "url": "https://glygen.org/publication/PubMed/21320696" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "26198070", "url": "https://glygen.org/publication/PubMed/26198070" } ], "site_lbl": "Thr21" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8GYN5-1.6.12", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q8GYN5-1.9.9", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.6.12", "start_pos": 6, "end_pos": 12, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Pseudomonas syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4, from Arabidopsis membranes to block RPM1 activation.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005-05-03", "authors": "Kim Han-Suk, Desveaux Darrell, Singer Alex U, Patel Priyesh, Sondek John, Dangl Jeffery L", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "VPKFGNW", "start_aa": "V", "up_seq": "MARSN", "down_seq": "EAEENVPYTAYFDKARKTRA", "mutagenesis": [ { "sequence_org": "VPKFGNW", "sequence_mut": "APKAANA", "comment": "No alteration of membrane localization.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "15845764", "url": "https://glygen.org/publication/PubMed/15845764" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8GYN5-1.9.9", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GYN5-1.21.21", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Activation of a phytopathogenic bacterial effector protein by a eukaryotic cyclophilin.", "journal": "Science (New York, N.Y.)", "date": "2005-04-22", "authors": "Coaker Gitta, Falick Arnold, Staskawicz Brian", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "15746386", "url": "https://glygen.org/publication/PubMed/15746386" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15746386", "url": "https://glygen.org/publication/PubMed/15746386", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "MARSNVPK", "down_seq": "GNWEAEENVPYTAYFDKARK", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "No cleavage at position 9-10 by AvrRpt2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "15746386", "url": "https://glygen.org/publication/PubMed/15746386" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8GYN5-1.6.12", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8GYN5-1.21.21", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QFGDAGGSSNEAANKRQGRA", "down_seq": "QNNSYDNKSPLHKNSYDGTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser107" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8GYN5-1.94.94", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q8GYN5-1.95.95", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GYN5-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8GYN5-1.122.122", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NEAANKRQGRASQNNSYDNK", "down_seq": "PLHKNSYDGTGKSRPKPTNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser116" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8GYN5-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GYN5-1.122.122", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.122.122", "start_pos": 122, "end_pos": 122, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RQGRASQNNSYDNKSPLHKN", "down_seq": "YDGTGKSRPKPTNLRADESP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser122" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q8GYN5-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GYN5-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8GYN5-1.141.141", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.141.141", "start_pos": 141, "end_pos": 141, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NSYDGTGKSRPKPTNLRADE", "down_seq": "PEKVTVVPKFGDWDENNPSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser141" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GYN5-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GYN5-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GYN5-1.148.154", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8GYN5-1.151.151", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8GYN5-1.160.160", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TGKSRPKPTNLRADESPEKV", "down_seq": "VVPKFGDWDENNPSSADGYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr146" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8GYN5-1.141.141", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GYN5-1.148.154", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GYN5-1.151.151", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8GYN5-1.160.160", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8GYN5-1.166.166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGYTHIFNKVREERSSGANV", "down_seq": "GSSRTPTHQSSRNPNNTSSC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser183" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q8GYN5-1.166.166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GYN5-1.185.185", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GYN5-1.186.186", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GYN5-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8GYN5-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8GYN5-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8GYN5-1.203.205", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.185.185", "start_pos": 185, "end_pos": 185, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YTHIFNKVREERSSGANVSG", "down_seq": "SRTPTHQSSRNPNNTSSCCC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser185" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GYN5-1.166.166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GYN5-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GYN5-1.186.186", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GYN5-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GYN5-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GYN5-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q8GYN5-1.203.205", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "THIFNKVREERSSGANVSGS", "down_seq": "RTPTHQSSRNPNNTSSCCCF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "site_lbl": "Ser186" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8GYN5-1.166.166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GYN5-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GYN5-1.185.185", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GYN5-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GYN5-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GYN5-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8GYN5-1.203.205", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GYN5-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IFNKVREERSSGANVSGSSR", "down_seq": "PTHQSSRNPNNTSSCCCFGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr188" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8GYN5-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GYN5-1.185.185", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GYN5-1.186.186", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GYN5-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GYN5-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8GYN5-1.203.205", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "REERSSGANVSGSSRTPTHQ", "down_seq": "SRNPNNTSSCCCFGFGGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8GYN5-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8GYN5-1.185.185", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8GYN5-1.186.186", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GYN5-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GYN5-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8GYN5-1.203.205", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EERSSGANVSGSSRTPTHQS", "down_seq": "RNPNNTSSCCCFGFGGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser194" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q8GYN5-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8GYN5-1.185.185", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8GYN5-1.186.186", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GYN5-1.188.188", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GYN5-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GYN5-1.203.205", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DKARKTRAPGSKIMNPNDPE", "down_seq": "NSDSQSQAPPHPPSSRTKPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr45" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8GYN5-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8GYN5-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GYN5-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARKTRAPGSKIMNPNDPEYN", "down_seq": "DSQSQAPPHPPSSRTKPEQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GYN5-1.45.45", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GYN5-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8GYN5-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTRAPGSKIMNPNDPEYNSD", "down_seq": "QSQAPPHPPSSRTKPEQVDT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser49" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8GYN5-1.45.45", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GYN5-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GYN5-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8GYN5-1.69.69", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RAPGSKIMNPNDPEYNSDSQ", "down_seq": "QAPPHPPSSRTKPEQVDTVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8GYN5-1.45.45", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8GYN5-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GYN5-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q8GYN5-1.69.69", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SQSQAPPHPPSSRTKPEQVD", "down_seq": "VRRSREHMRSREESELKQFG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr69" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8GYN5-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q8GYN5-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8GYN5-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSRTKPEQVDTVRRSREHMR", "down_seq": "REESELKQFGDAGGSSNEAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8GYN5-1.69.69", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8GYN5-1.94.94", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q8GYN5-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.94.94", "start_pos": 94, "end_pos": 94, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "REHMRSREESELKQFGDAGG", "down_seq": "SNEAANKRQGRASQNNSYDN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser94" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q8GYN5-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GYN5-1.95.95", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8GYN5-1.107.107", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GYN5-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q8GYN5-1", "length": 211, "uniprot_id": "RIN4_ARATH", "protein_name": "RPM1-interacting protein 4", "refseq_ac": "NP_189143", "refseq_name": "RPM1 interacting protein 4", "gene_name": "RIN4", "gene_names_uniprotkb": "RIN4; AtRIN4; MJL12_1; RPM1 interacting protein 4", "gene_names_refseq": "AtRIN4; RIN4; RPM1 interacting protein 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EHMRSREESELKQFGDAGGS", "down_seq": "NEAANKRQGRASQNNSYDNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GYN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GYN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser95" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "148", "end_pos": "154" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "203", "end_pos": "205" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "6", "end_pos": "12" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "122", "end_pos": "122" }, { "start_pos": "141", "end_pos": "141" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "188", "end_pos": "188" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "94", "end_pos": "94" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q8GYN5-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GYN5-1.94.94", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8GYN5-1.107.107", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38825-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "Q38825-1", "length": 243, "uniprot_id": "IAA7_ARATH", "protein_name": "Auxin-responsive protein IAA7", "refseq_ac": "NP_188945", "refseq_name": "indole-3-acetic acid 7", "gene_name": "IAA7", "gene_names_uniprotkb": "IAA7; AUXIN RESISTANT 2; AXR2; MXC7.8; indole-3-acetic acid 7", "gene_names_refseq": "AUXIN RESISTANT 2; AXR2; IAA7; indole-3-acetic acid 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38825", "url": "https://www.uniprot.org/uniprotkb/Q38825" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38825", "url": "https://www.uniprot.org/uniprotkb/Q38825", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "EKTTLKDPSKPPAKAQVVGW", "down_seq": "PVRNYRKNMMTQQKTSSGAE", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "In axr2-1; gain of function. Affects auxin-related developmental processes. Affects photomorphogenesis.", "evidence": [ { "database": "UniProtKB", "id": "Q38825", "url": "https://www.uniprot.org/uniprotkb/Q38825" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "87", "end_pos": "87" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38825-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "Q38825-1", "length": 243, "uniprot_id": "IAA7_ARATH", "protein_name": "Auxin-responsive protein IAA7", "refseq_ac": "NP_188945", "refseq_name": "indole-3-acetic acid 7", "gene_name": "IAA7", "gene_names_uniprotkb": "IAA7; AUXIN RESISTANT 2; AXR2; MXC7.8; indole-3-acetic acid 7", "gene_names_refseq": "AUXIN RESISTANT 2; AXR2; IAA7; indole-3-acetic acid 7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38825", "url": "https://www.uniprot.org/uniprotkb/Q38825" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38825", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38825", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKVSMDGAPYLRKVDLKMYK", "down_seq": "YQDLSDALAKMFSSFTMGNY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38825", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38825" } ], "site_lbl": "Ser147" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "87", "end_pos": "87" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "147", "end_pos": "147" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LHE5-1.274.274", "start_pos": 274, "end_pos": 274, "uniprot_canonical_ac": "Q9LHE5-1", "length": 309, "uniprot_id": "TO401_ARATH", "protein_name": "Mitochondrial import receptor subunit TOM40-1", "refseq_ac": "", "refseq_name": "", "gene_name": "TOM40-1; TOM40", "gene_names_uniprotkb": "TOM40-1; TOM40; MZE19.5", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LHE5", "url": "https://www.uniprot.org/uniprotkb/Q9LHE5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LHE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHE5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q9LHE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHE5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YDYMLRQARVRGKIDSNGVA", "down_seq": "ALLEERLSMGLNFLLSAELD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHE5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHE5" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser274" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "274", "end_pos": "274" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9M2L4-1.1022.1022", "start_pos": 1022, "end_pos": 1022, "uniprot_canonical_ac": "Q9M2L4-1", "length": 1025, "uniprot_id": "ACA11_ARATH", "protein_name": "Putative calcium-transporting ATPase 11, plasma membrane-type", "refseq_ac": "NP_191292", "refseq_name": "autoinhibited Ca2+-ATPase 11", "gene_name": "ACA11", "gene_names_uniprotkb": "ACA11; F28O9.180; autoinhibited Ca2+-ATPase 11", "gene_names_refseq": "ACA11; autoinhibited Ca2+-ATPase 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M2L4", "url": "https://www.uniprot.org/uniprotkb/Q9M2L4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CIPVESNRHHDGYELLPSGP", "down_seq": "DSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser1022" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1022", "end_pos": "1022" }, { "start_pos": "1024", "end_pos": "1024" }, { "start_pos": "560", "end_pos": "560" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9M2L4-1.1024.1024", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9M2L4-1.1024.1024", "start_pos": 1024, "end_pos": 1024, "uniprot_canonical_ac": "Q9M2L4-1", "length": 1025, "uniprot_id": "ACA11_ARATH", "protein_name": "Putative calcium-transporting ATPase 11, plasma membrane-type", "refseq_ac": "NP_191292", "refseq_name": "autoinhibited Ca2+-ATPase 11", "gene_name": "ACA11", "gene_names_uniprotkb": "ACA11; F28O9.180; autoinhibited Ca2+-ATPase 11", "gene_names_refseq": "ACA11; autoinhibited Ca2+-ATPase 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M2L4", "url": "https://www.uniprot.org/uniprotkb/Q9M2L4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVESNRHHDGYELLPSGPSD", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1024" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1022", "end_pos": "1022" }, { "start_pos": "1024", "end_pos": "1024" }, { "start_pos": "560", "end_pos": "560" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9M2L4-1.1022.1022", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9M2L4-1.560.560", "start_pos": 560, "end_pos": 560, "uniprot_canonical_ac": "Q9M2L4-1", "length": 1025, "uniprot_id": "ACA11_ARATH", "protein_name": "Putative calcium-transporting ATPase 11, plasma membrane-type", "refseq_ac": "NP_191292", "refseq_name": "autoinhibited Ca2+-ATPase 11", "gene_name": "ACA11", "gene_names_uniprotkb": "ACA11; F28O9.180; autoinhibited Ca2+-ATPase 11", "gene_names_refseq": "ACA11; autoinhibited Ca2+-ATPase 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M2L4", "url": "https://www.uniprot.org/uniprotkb/Q9M2L4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EHKILKIEPFNSDKKKMSVL", "down_seq": "SHSGGKVRAFCKGASEIVLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M2L4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M2L4" } ], "site_lbl": "Thr560" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1022", "end_pos": "1022" }, { "start_pos": "1024", "end_pos": "1024" }, { "start_pos": "560", "end_pos": "560" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P27140-1.280.280", "start_pos": 280, "end_pos": 280, "uniprot_canonical_ac": "P27140-1", "length": 347, "uniprot_id": "BCA1_ARATH", "protein_name": "Beta carbonic anhydrase 1, chloroplastic", "refseq_ac": "NP_186799", "refseq_name": "carbonic anhydrase 1", "gene_name": "BCA1; CA1", "gene_names_uniprotkb": "BCA1; CA1; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; carbonic anhydrase 1", "gene_names_refseq": "ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; SALICYLIC ACID-BINDING PROTEIN 3; carbonic anhydrase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "S-nitrosylation of AtSABP3 antagonizes the expression of plant immunity.", "journal": "The Journal of biological chemistry", "date": "2009-01-23", "authors": "Wang Yi-Qin, Feechan Angela, Yun Byung-Wook, Shafiei Reza, Hofmann Andreas, Taylor Paul, Xue Peng, Yang Fu-Quan, Xie Zhen-Sheng, Pallas Jacqueline A, Chu Cheng-Cai, Loake Gary J", "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "reference": [ { "type": "PubMed", "id": "19017644", "url": "https://glygen.org/publication/PubMed/19017644" } ] } ], "crossref": [ { "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19017644", "url": "https://glygen.org/publication/PubMed/19017644", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "AKSKVISELGDSAFEDQCGR", "down_seq": "EREAVNVSLANLLTYPFVRE", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of nitrosylation and decreased carbonic anhydrase activity, but no effect on salicylic acid binding.", "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" }, { "database": "PubMed", "id": "19017644", "url": "https://glygen.org/publication/PubMed/19017644" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "280", "end_pos": "280" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P27140-1.266.266", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27140-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "P27140-1", "length": 347, "uniprot_id": "BCA1_ARATH", "protein_name": "Beta carbonic anhydrase 1, chloroplastic", "refseq_ac": "NP_186799", "refseq_name": "carbonic anhydrase 1", "gene_name": "BCA1; CA1", "gene_names_uniprotkb": "BCA1; CA1; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; carbonic anhydrase 1", "gene_names_refseq": "ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; SALICYLIC ACID-BINDING PROTEIN 3; carbonic anhydrase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTVAAAKVEQITAALQTGTS", "down_seq": "DKKAFDPVETIKQGFIKFKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser121" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "280", "end_pos": "280" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P27140-1.131.131", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27140-1.131.131", "start_pos": 131, "end_pos": 131, "uniprot_canonical_ac": "P27140-1", "length": 347, "uniprot_id": "BCA1_ARATH", "protein_name": "Beta carbonic anhydrase 1, chloroplastic", "refseq_ac": "NP_186799", "refseq_name": "carbonic anhydrase 1", "gene_name": "BCA1; CA1", "gene_names_uniprotkb": "BCA1; CA1; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; carbonic anhydrase 1", "gene_names_refseq": "ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; SALICYLIC ACID-BINDING PROTEIN 3; carbonic anhydrase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ITAALQTGTSSDKKAFDPVE", "down_seq": "IKQGFIKFKKEKYETNPALY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr131" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "280", "end_pos": "280" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P27140-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27140-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "P27140-1", "length": 347, "uniprot_id": "BCA1_ARATH", "protein_name": "Beta carbonic anhydrase 1, chloroplastic", "refseq_ac": "NP_186799", "refseq_name": "carbonic anhydrase 1", "gene_name": "BCA1; CA1", "gene_names_uniprotkb": "BCA1; CA1; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; carbonic anhydrase 1", "gene_names_refseq": "ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; SALICYLIC ACID-BINDING PROTEIN 3; carbonic anhydrase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] } ], "crossref": [ { "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FKKEKYETNPALYGELAKGQ", "down_seq": "PKYMVFACSDSRVCPSHVLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ], "site_lbl": "Ser159" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "280", "end_pos": "280" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "P27140-1.175.175", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27140-1.175.175", "start_pos": 175, "end_pos": 175, "uniprot_canonical_ac": "P27140-1", "length": 347, "uniprot_id": "BCA1_ARATH", "protein_name": "Beta carbonic anhydrase 1, chloroplastic", "refseq_ac": "NP_186799", "refseq_name": "carbonic anhydrase 1", "gene_name": "BCA1; CA1", "gene_names_uniprotkb": "BCA1; CA1; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; carbonic anhydrase 1", "gene_names_refseq": "ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; SALICYLIC ACID-BINDING PROTEIN 3; carbonic anhydrase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKGQSPKYMVFACSDSRVCP", "down_seq": "HVLDFQPGDAFVVRNIANMV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "site_lbl": "Ser175" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "280", "end_pos": "280" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P27140-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P27140-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "P27140-1", "length": 347, "uniprot_id": "BCA1_ARATH", "protein_name": "Beta carbonic anhydrase 1, chloroplastic", "refseq_ac": "NP_186799", "refseq_name": "carbonic anhydrase 1", "gene_name": "BCA1; CA1", "gene_names_uniprotkb": "BCA1; CA1; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; carbonic anhydrase 1", "gene_names_refseq": "ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; SALICYLIC ACID-BINDING PROTEIN 3; carbonic anhydrase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" }, { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDAFVVRNIANMVPPFDKVK", "down_seq": "GGVGAAIEYAVLHLKVENIV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" } ], "site_lbl": "Tyr203" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "280", "end_pos": "280" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27140-1.266.266", "start_pos": 266, "end_pos": 266, "uniprot_canonical_ac": "P27140-1", "length": 347, "uniprot_id": "BCA1_ARATH", "protein_name": "Beta carbonic anhydrase 1, chloroplastic", "refseq_ac": "NP_186799", "refseq_name": "carbonic anhydrase 1", "gene_name": "BCA1; CA1", "gene_names_uniprotkb": "BCA1; CA1; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; carbonic anhydrase 1", "gene_names_refseq": "ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3; ATBCA1; ATSABP3; BETA CARBONIC ANHYDRASE 1; CA1; F4P13.5; F4P13_5; SABP3; SALICYLIC ACID-BINDING PROTEIN 3; carbonic anhydrase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" }, { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STDFIEDWVKICLPAKSKVI", "down_seq": "ELGDSAFEDQCGRCEREAVN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P27140", "url": "https://www.uniprot.org/uniprotkb/P27140" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "P27140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27140" } ], "site_lbl": "Ser266" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "280", "end_pos": "280" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "266", "end_pos": "266" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P27140-1.280.280", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LUC3-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "Q9LUC3-1", "length": 598, "uniprot_id": "MPK19_ARATH", "protein_name": "Mitogen-activated protein kinase 19", "refseq_ac": "NP_188090", "refseq_name": "MAP kinase 19", "gene_name": "MPK19", "gene_names_uniprotkb": "MPK19; ATMPK19; MAP kinase 19; MIE1.22", "gene_names_refseq": "ARABIDOPSIS THALIANA MAP KINASE 19; ATMPK19; MAP kinase 19; MPK19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VCDFGLARVSFNDTPTTVFW", "down_seq": "DYVATRWYRAPELCGSFCSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ], "site_lbl": "Thr187" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "192", "end_pos": "192" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9LUC3-1.189.189", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9LUC3-1.192.192", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LUC3-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "Q9LUC3-1", "length": 598, "uniprot_id": "MPK19_ARATH", "protein_name": "Mitogen-activated protein kinase 19", "refseq_ac": "NP_188090", "refseq_name": "MAP kinase 19", "gene_name": "MPK19", "gene_names_uniprotkb": "MPK19; ATMPK19; MAP kinase 19; MIE1.22", "gene_names_refseq": "ARABIDOPSIS THALIANA MAP KINASE 19; ATMPK19; MAP kinase 19; MPK19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DFGLARVSFNDTPTTVFWTD", "down_seq": "VATRWYRAPELCGSFCSKYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ], "site_lbl": "Tyr189" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "192", "end_pos": "192" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9LUC3-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9LUC3-1.192.192", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LUC3-1.192.192", "start_pos": 192, "end_pos": 192, "uniprot_canonical_ac": "Q9LUC3-1", "length": 598, "uniprot_id": "MPK19_ARATH", "protein_name": "Mitogen-activated protein kinase 19", "refseq_ac": "NP_188090", "refseq_name": "MAP kinase 19", "gene_name": "MPK19", "gene_names_uniprotkb": "MPK19; ATMPK19; MAP kinase 19; MIE1.22", "gene_names_refseq": "ARABIDOPSIS THALIANA MAP KINASE 19; ATMPK19; MAP kinase 19; MPK19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LARVSFNDTPTTVFWTDYVA", "down_seq": "RWYRAPELCGSFCSKYTPAI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9LUC3", "url": "https://www.uniprot.org/uniprotkb/Q9LUC3" } ], "site_lbl": "Thr192" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "192", "end_pos": "192" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9LUC3-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9LUC3-1.189.189", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LXJ0-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "Q9LXJ0-1", "length": 473, "uniprot_id": "FTZ22_ARATH", "protein_name": "Cell division protein FtsZ homolog 2-2, chloroplastic", "refseq_ac": "NP_001327516", "refseq_name": "Tubulin/FtsZ family protein", "gene_name": "FTSZ2-2", "gene_names_uniprotkb": "FTSZ2-2; F3C22.150", "gene_names_refseq": "FTSZ2-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LXJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LXJ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "In vivo phosphorylation of FtsZ2 in Arabidopsis thaliana.", "journal": "The Biochemical journal", "date": "2012-09-15", "authors": "Gargano Daniela, Maple-Gr\u00f8dem Jodi, M\u00f8ller Simon G", "evidence": [ { "database": "UniProtKB", "id": "Q9LXJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LXJ0" }, { "database": "iPTMnet", "id": "Q9LXJ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LXJ0" } ], "reference": [ { "type": "PubMed", "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492" } ] } ], "crossref": [ { "id": "Q9LXJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LXJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9LXJ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LXJ0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NVDTLIVIPNDKLLAAVSQS", "down_seq": "PVTEAFNLADDILRQGVRGI", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "V", "comment": "Normal interaction with FtsZ proteins and with ARC6. Lost ability to form contractile ring at the chloroplast midpoint.", "evidence": [ { "database": "UniProtKB", "id": "Q9LXJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LXJ0" }, { "database": "PubMed", "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PGK1", "evidence": [ { "database": "UniProtKB", "id": "Q9LXJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LXJ0" }, { "database": "iPTMnet", "id": "Q9LXJ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LXJ0" }, { "database": "PubMed", "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492" } ], "site_lbl": "Thr282" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "340", "end_pos": "340" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LXJ0-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "Q9LXJ0-1", "length": 473, "uniprot_id": "FTZ22_ARATH", "protein_name": "Cell division protein FtsZ homolog 2-2, chloroplastic", "refseq_ac": "NP_001327516", "refseq_name": "Tubulin/FtsZ family protein", "gene_name": "FTSZ2-2", "gene_names_uniprotkb": "FTSZ2-2; F3C22.150", "gene_names_refseq": "FTSZ2-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LXJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LXJ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LXJ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LXJ0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RAIMANAGSSLMGIGTATGK", "down_seq": "RARDAALNAIQSPLLDIGIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LXJ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LXJ0" } ], "site_lbl": "Thr340" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "340", "end_pos": "340" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LJR3-1.594.594", "start_pos": 594, "end_pos": 594, "uniprot_canonical_ac": "Q9LJR3-1", "length": 845, "uniprot_id": "SPA3_ARATH", "protein_name": "Protein SPA1-RELATED 3", "refseq_ac": "NP_001327623", "refseq_name": "SPA1-related 3", "gene_name": "SPA3", "gene_names_uniprotkb": "SPA3; K7L4.16; SPA1-related 3", "gene_names_refseq": "SPA1-related 3; SPA3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LJR3", "url": "https://www.uniprot.org/uniprotkb/Q9LJR3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LJR3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJR3" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q9LJR3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJR3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HYPVVELAGRSKLSSLCWNS", "down_seq": "IKSQIASSNFDGVVQIWDVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LJR3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LJR3" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Tyr594" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "594", "end_pos": "594" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1F2-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q8H1F2-1", "length": 459, "uniprot_id": "RGS1_ARATH", "protein_name": "Regulator of G protein signaling 1", "refseq_ac": "NP_189238", "refseq_name": "REGULATOR OF G-PROTEIN SIGNALING 1", "gene_name": "RGS1", "gene_names_uniprotkb": "RGS1; ATRGS1; MPE11.27; MPE11.28", "gene_names_refseq": "ATRGS1; REGULATOR OF G-PROTEIN SIGNALING 1; RGS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GTPase acceleration as the rate-limiting step in Arabidopsis G protein-coupled sugar signaling.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007-10-30", "authors": "Johnston Christopher A, Taylor J Philip, Gao Yajun, Kimple Adam J, Grigston Jeffrey C, Chen Jin-Gui, Siderovski David P, Jones Alan M, Willard Francis S", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "17951432", "url": "https://glygen.org/publication/PubMed/17951432" } ] } ], "crossref": [ { "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17951432", "url": "https://glygen.org/publication/PubMed/17951432", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "LLNKRFRHSFMEFADSCYAG", "down_seq": "TLHFFEEVYEHGKIPEDDSI", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "Loss of GTPase-accelerating activity, loss of interaction with GPA1 and loss of endocytosis.", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" }, { "database": "PubMed", "id": "17951432", "url": "https://glygen.org/publication/PubMed/17951432" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1F2-1.428.428", "start_pos": 428, "end_pos": 428, "uniprot_canonical_ac": "Q8H1F2-1", "length": 459, "uniprot_id": "RGS1_ARATH", "protein_name": "Regulator of G protein signaling 1", "refseq_ac": "NP_189238", "refseq_name": "REGULATOR OF G-PROTEIN SIGNALING 1", "gene_name": "RGS1", "gene_names_uniprotkb": "RGS1; ATRGS1; MPE11.27; MPE11.28", "gene_names_refseq": "ATRGS1; REGULATOR OF G-PROTEIN SIGNALING 1; RGS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Endocytosis of the seven-transmembrane RGS1 protein activates G-protein-coupled signalling in Arabidopsis.", "journal": "Nature cell biology", "date": "2012-10", "authors": "Urano Daisuke, Phan Nguyen, Jones Janice C, Yang Jing, Huang Jirong, Grigston Jeffrey, Taylor J Philip, Jones Alan M", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" }, { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907" } ] }, { "title": "Ligand-triggered de-repression of Arabidopsis heterotrimeric G proteins coupled to immune receptor kinases.", "journal": "Cell research", "date": "2018-05", "authors": "Liang Xiangxiu, Ma Miaomiao, Zhou Zhaoyang, Wang Jinlong, Yang Xinru, Rao Shaofei, Bi Guozhi, Li Lin, Zhang Xiaojuan, Chai Jijie, Chen She, Zhou Jian-Min", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645" } ] }, { "title": "Predicted Functional Implications of Phosphorylation of Regulator of G Protein Signaling Protein in Plants.", "journal": "Frontiers in plant science", "date": "2017", "authors": "Tunc-Ozdemir Meral, Li Bo, Jaiswal Dinesh K, Urano Daisuke, Jones Alan M, Torres Matthew P", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "28890722", "url": "https://glygen.org/publication/PubMed/28890722" } ] } ], "crossref": [ { "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28890722", "url": "https://glygen.org/publication/PubMed/28890722", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YFIKFKEEESCHEAMHKEGY", "down_seq": "FSSPRLSSVQGSDDPFYQEH", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of endocytosis; when associated with A-435 and A-436.", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" }, { "database": "PubMed", "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9FL28-1", "kinase_gene_name": "FLS2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" }, { "database": "PubMed", "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645" } ], "site_lbl": "Ser428" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" }, { "database": "PubMed", "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907" }, { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" }, { "database": "PubMed", "id": "28890722", "url": "https://glygen.org/publication/PubMed/28890722" } ], "site_lbl": "Ser428" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8H1F2-1.431.431", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8H1F2-1.435.435", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8H1F2-1.436.436", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1F2-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "Q8H1F2-1", "length": 459, "uniprot_id": "RGS1_ARATH", "protein_name": "Regulator of G protein signaling 1", "refseq_ac": "NP_189238", "refseq_name": "REGULATOR OF G-PROTEIN SIGNALING 1", "gene_name": "RGS1", "gene_names_uniprotkb": "RGS1; ATRGS1; MPE11.27; MPE11.28", "gene_names_refseq": "ATRGS1; REGULATOR OF G-PROTEIN SIGNALING 1; RGS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Endocytosis of the seven-transmembrane RGS1 protein activates G-protein-coupled signalling in Arabidopsis.", "journal": "Nature cell biology", "date": "2012-10", "authors": "Urano Daisuke, Phan Nguyen, Jones Janice C, Yang Jing, Huang Jirong, Grigston Jeffrey, Taylor J Philip, Jones Alan M", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" }, { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907" } ] }, { "title": "Ligand-triggered de-repression of Arabidopsis heterotrimeric G proteins coupled to immune receptor kinases.", "journal": "Cell research", "date": "2018-05", "authors": "Liang Xiangxiu, Ma Miaomiao, Zhou Zhaoyang, Wang Jinlong, Yang Xinru, Rao Shaofei, Bi Guozhi, Li Lin, Zhang Xiaojuan, Chai Jijie, Chen She, Zhou Jian-Min", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645" } ] } ], "crossref": [ { "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EESCHEAMHKEGYSFSSPRL", "down_seq": "SVQGSDDPFYQEHMSKSSRC", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of endocytosis; when associated with A-428 and A-436.", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" }, { "database": "PubMed", "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9FL28-1", "kinase_gene_name": "FLS2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" }, { "database": "PubMed", "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645" } ], "site_lbl": "Ser435" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8H1F2-1.428.428", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8H1F2-1.431.431", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8H1F2-1.436.436", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1F2-1.436.436", "start_pos": 436, "end_pos": 436, "uniprot_canonical_ac": "Q8H1F2-1", "length": 459, "uniprot_id": "RGS1_ARATH", "protein_name": "Regulator of G protein signaling 1", "refseq_ac": "NP_189238", "refseq_name": "REGULATOR OF G-PROTEIN SIGNALING 1", "gene_name": "RGS1", "gene_names_uniprotkb": "RGS1; ATRGS1; MPE11.27; MPE11.28", "gene_names_refseq": "ATRGS1; REGULATOR OF G-PROTEIN SIGNALING 1; RGS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Endocytosis of the seven-transmembrane RGS1 protein activates G-protein-coupled signalling in Arabidopsis.", "journal": "Nature cell biology", "date": "2012-10", "authors": "Urano Daisuke, Phan Nguyen, Jones Janice C, Yang Jing, Huang Jirong, Grigston Jeffrey, Taylor J Philip, Jones Alan M", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" }, { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907" } ] }, { "title": "Predicted Functional Implications of Phosphorylation of Regulator of G Protein Signaling Protein in Plants.", "journal": "Frontiers in plant science", "date": "2017", "authors": "Tunc-Ozdemir Meral, Li Bo, Jaiswal Dinesh K, Urano Daisuke, Jones Alan M, Torres Matthew P", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "28890722", "url": "https://glygen.org/publication/PubMed/28890722" } ] }, { "title": "Ligand-triggered de-repression of Arabidopsis heterotrimeric G proteins coupled to immune receptor kinases.", "journal": "Cell research", "date": "2018-05", "authors": "Liang Xiangxiu, Ma Miaomiao, Zhou Zhaoyang, Wang Jinlong, Yang Xinru, Rao Shaofei, Bi Guozhi, Li Lin, Zhang Xiaojuan, Chai Jijie, Chen She, Zhou Jian-Min", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645" } ] } ], "crossref": [ { "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28890722", "url": "https://glygen.org/publication/PubMed/28890722", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESCHEAMHKEGYSFSSPRLS", "down_seq": "VQGSDDPFYQEHMSKSSRCS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of endocytosis; when associated with A-428 and A-435.", "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" }, { "database": "PubMed", "id": "22940907", "url": "https://glygen.org/publication/PubMed/22940907" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9FL28-1", "kinase_gene_name": "FLS2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" }, { "database": "PubMed", "id": "28890722", "url": "https://glygen.org/publication/PubMed/28890722" }, { "database": "PubMed", "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645" } ], "site_lbl": "Ser436" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8H1F2-1.428.428", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8H1F2-1.431.431", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8H1F2-1.435.435", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1F2-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "Q8H1F2-1", "length": 459, "uniprot_id": "RGS1_ARATH", "protein_name": "Regulator of G protein signaling 1", "refseq_ac": "NP_189238", "refseq_name": "REGULATOR OF G-PROTEIN SIGNALING 1", "gene_name": "RGS1", "gene_names_uniprotkb": "RGS1; ATRGS1; MPE11.27; MPE11.28", "gene_names_refseq": "ATRGS1; REGULATOR OF G-PROTEIN SIGNALING 1; RGS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] } ], "crossref": [ { "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKKRQNFEFQRMGQALGIPD", "down_seq": "GLLFRKEEFRPVDPNEPLDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser278" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1F2-1.431.431", "start_pos": 431, "end_pos": 431, "uniprot_canonical_ac": "Q8H1F2-1", "length": 459, "uniprot_id": "RGS1_ARATH", "protein_name": "Regulator of G protein signaling 1", "refseq_ac": "NP_189238", "refseq_name": "REGULATOR OF G-PROTEIN SIGNALING 1", "gene_name": "RGS1", "gene_names_uniprotkb": "RGS1; ATRGS1; MPE11.27; MPE11.28", "gene_names_refseq": "ATRGS1; REGULATOR OF G-PROTEIN SIGNALING 1; RGS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1F2", "url": "https://www.uniprot.org/uniprotkb/Q8H1F2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-triggered de-repression of Arabidopsis heterotrimeric G proteins coupled to immune receptor kinases.", "journal": "Cell research", "date": "2018-05", "authors": "Liang Xiangxiu, Ma Miaomiao, Zhou Zhaoyang, Wang Jinlong, Yang Xinru, Rao Shaofei, Bi Guozhi, Li Lin, Zhang Xiaojuan, Chai Jijie, Chen She, Zhou Jian-Min", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" } ], "reference": [ { "type": "PubMed", "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645" } ] } ], "crossref": [ { "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KFKEEESCHEAMHKEGYSFS", "down_seq": "PRLSSVQGSDDPFYQEHMSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9FL28-1", "kinase_gene_name": "FLS2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1F2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1F2" }, { "database": "PubMed", "id": "29545645", "url": "https://glygen.org/publication/PubMed/29545645" } ], "site_lbl": "Ser431" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "278", "end_pos": "278" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8H1F2-1.428.428", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8H1F2-1.435.435", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8H1F2-1.436.436", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41376-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "P41376-1", "length": 412, "uniprot_id": "IF4A1_ARATH", "protein_name": "Eukaryotic initiation factor 4A-1", "refseq_ac": "NP_566469", "refseq_name": "eukaryotic translation initiation factor 4A1", "gene_name": "EIF4A1", "gene_names_uniprotkb": "EIF4A1; MDC16.4; RH4; TIF4A-1; TIF4A1", "gene_names_refseq": "EIF4A1; RH4; TIF4A1; eukaryotic translation initiation factor 4A1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSGTGKTATFCSGVLQQLDF", "down_seq": "LIQCQALVLAPTRELAQQIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376" } ], "site_lbl": "Ser104" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P41376-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "P41376-1", "length": 412, "uniprot_id": "IF4A1_ARATH", "protein_name": "Eukaryotic initiation factor 4A-1", "refseq_ac": "NP_566469", "refseq_name": "eukaryotic translation initiation factor 4A1", "gene_name": "EIF4A1", "gene_names_uniprotkb": "EIF4A1; MDC16.4; RH4; TIF4A-1; TIF4A1", "gene_names_refseq": "EIF4A1; RH4; TIF4A1; eukaryotic translation initiation factor 4A1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MRZ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MRZ7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KVMRALGDYLGVKVHACVGG", "down_seq": "SVREDQRILQAGVHVVVGTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376" }, { "database": "iPTMnet", "id": "A8MRZ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MRZ7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr145" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P41376-1.146.146", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41376-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "P41376-1", "length": 412, "uniprot_id": "IF4A1_ARATH", "protein_name": "Eukaryotic initiation factor 4A-1", "refseq_ac": "NP_566469", "refseq_name": "eukaryotic translation initiation factor 4A1", "gene_name": "EIF4A1", "gene_names_uniprotkb": "EIF4A1; MDC16.4; RH4; TIF4A-1; TIF4A1", "gene_names_refseq": "EIF4A1; RH4; TIF4A1; eukaryotic translation initiation factor 4A1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.", "journal": "Journal of proteomics", "date": "2009-07-21", "authors": "Wang Zenglan, Dong Gaofeng, Singh Sasha, Steen Hanno, Li Jiaxu", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "A8MRZ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MRZ7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VMRALGDYLGVKVHACVGGT", "down_seq": "VREDQRILQAGVHVVVGTPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MRZ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MRZ7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" }, { "database": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser146" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P41376-1.145.145", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P41376-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "P41376-1", "length": 412, "uniprot_id": "IF4A1_ARATH", "protein_name": "Eukaryotic initiation factor 4A-1", "refseq_ac": "NP_566469", "refseq_name": "eukaryotic translation initiation factor 4A1", "gene_name": "EIF4A1", "gene_names_uniprotkb": "EIF4A1; MDC16.4; RH4; TIF4A-1; TIF4A1", "gene_names_refseq": "EIF4A1; RH4; TIF4A1; eukaryotic translation initiation factor 4A1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KPVRILVKRDELTLEGIKQF", "down_seq": "VNVEKEEWKLETLCDLYETL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "site_lbl": "Tyr256" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P41376-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "P41376-1", "length": 412, "uniprot_id": "IF4A1_ARATH", "protein_name": "Eukaryotic initiation factor 4A-1", "refseq_ac": "NP_566469", "refseq_name": "eukaryotic translation initiation factor 4A1", "gene_name": "EIF4A1", "gene_names_uniprotkb": "EIF4A1; MDC16.4; RH4; TIF4A-1; TIF4A1", "gene_names_refseq": "EIF4A1; RH4; TIF4A1; eukaryotic translation initiation factor 4A1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P41376", "url": "https://www.uniprot.org/uniprotkb/P41376" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAG", "down_seq": "APEGTQFDARQFDQKLNEVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P41376", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P41376" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q06548-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q06548-1", "length": 410, "uniprot_id": "PBL9_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL9", "refseq_ac": "NP_001320608", "refseq_name": "Protein kinase superfamily protein", "gene_name": "APK1A; PBL9", "gene_names_uniprotkb": "APK1A; PBL9; APK1A; APK1; F22G5.5; F22G5_5; PIX15", "gene_names_refseq": "APK1A; APK1; F22G5.5; F22G5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRHLVKLIGYCLEDEHRLLV", "down_seq": "EFMPRGSLENHLFRRGLYFQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "site_lbl": "Tyr151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q06548-1.207.207", "start_pos": 207, "end_pos": 207, "uniprot_canonical_ac": "Q06548-1", "length": 410, "uniprot_id": "PBL9_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL9", "refseq_ac": "NP_001320608", "refseq_name": "Protein kinase superfamily protein", "gene_name": "APK1A; PBL9", "gene_names_uniprotkb": "APK1A; PBL9; APK1A; APK1; F22G5.5; F22G5_5; PIX15", "gene_names_refseq": "APK1A; APK1; F22G5.5; F22G5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGLAFLHSSETRVIYRDFKT", "down_seq": "NILLDSEYNAKLSDFGLAKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "site_lbl": "Ser207" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q06548-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "Q06548-1", "length": 410, "uniprot_id": "PBL9_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL9", "refseq_ac": "NP_001320608", "refseq_name": "Protein kinase superfamily protein", "gene_name": "APK1A; PBL9", "gene_names_uniprotkb": "APK1A; PBL9; APK1A; APK1; F22G5.5; F22G5_5; PIX15", "gene_names_refseq": "APK1A; APK1; F22G5.5; F22G5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLSDFGLAKDGPIGDKSHV", "down_seq": "TRVMGTHGYAAPEYLATGHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q06548-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q06548-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q06548-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q06548-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "Q06548-1", "length": 410, "uniprot_id": "PBL9_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL9", "refseq_ac": "NP_001320608", "refseq_name": "Protein kinase superfamily protein", "gene_name": "APK1A; PBL9", "gene_names_uniprotkb": "APK1A; PBL9; APK1A; APK1; F22G5.5; F22G5_5; PIX15", "gene_names_refseq": "APK1A; APK1; F22G5.5; F22G5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLSDFGLAKDGPIGDKSHVS", "down_seq": "RVMGTHGYAAPEYLATGHLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "site_lbl": "Thr238" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q06548-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q06548-1.243.243", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q06548-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q06548-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "Q06548-1", "length": 410, "uniprot_id": "PBL9_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL9", "refseq_ac": "NP_001320608", "refseq_name": "Protein kinase superfamily protein", "gene_name": "APK1A; PBL9", "gene_names_uniprotkb": "APK1A; PBL9; APK1A; APK1; F22G5.5; F22G5_5; PIX15", "gene_names_refseq": "APK1A; APK1; F22G5.5; F22G5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLAKDGPIGDKSHVSTRVMG", "down_seq": "HGYAAPEYLATGHLTTKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "site_lbl": "Thr243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q06548-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q06548-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q06548-1.251.251", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q06548-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "Q06548-1", "length": 410, "uniprot_id": "PBL9_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL9", "refseq_ac": "NP_001320608", "refseq_name": "Protein kinase superfamily protein", "gene_name": "APK1A; PBL9", "gene_names_uniprotkb": "APK1A; PBL9; APK1A; APK1; F22G5.5; F22G5_5; PIX15", "gene_names_refseq": "APK1A; APK1; F22G5.5; F22G5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDKSHVSTRVMGTHGYAAPE", "down_seq": "LATGHLTTKSDVYSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "site_lbl": "Tyr251" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q06548-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q06548-1.238.238", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q06548-1.243.243", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q06548-1.377.377", "start_pos": 377, "end_pos": 377, "uniprot_canonical_ac": "Q06548-1", "length": 410, "uniprot_id": "PBL9_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL9", "refseq_ac": "NP_001320608", "refseq_name": "Protein kinase superfamily protein", "gene_name": "APK1A; PBL9", "gene_names_uniprotkb": "APK1A; PBL9; APK1A; APK1; F22G5.5; F22G5_5; PIX15", "gene_names_refseq": "APK1A; APK1; F22G5.5; F22G5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q06548", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06548" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q06548", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06548", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NAAIGGNMDKTDRRMRRRSD", "down_seq": "VVSKKVNAGFARQTAVGSTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q06548", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06548" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser377" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q06548-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q06548-1", "length": 410, "uniprot_id": "PBL9_ARATH", "protein_name": "Probable serine/threonine-protein kinase PBL9", "refseq_ac": "NP_001320608", "refseq_name": "Protein kinase superfamily protein", "gene_name": "APK1A; PBL9", "gene_names_uniprotkb": "APK1A; PBL9; APK1A; APK1; F22G5.5; F22G5_5; PIX15", "gene_names_refseq": "APK1A; APK1; F22G5.5; F22G5_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q06548", "url": "https://www.uniprot.org/uniprotkb/Q06548" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q06548-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06548-1" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] } ], "crossref": [ { "id": "Q06548", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06548", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLKSFSFAELKSATRNFRPD", "down_seq": "VLGEGGFGCVFKGWIDEKSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q06548", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q06548" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser72" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LDT3-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "Q9LDT3-1", "length": 231, "uniprot_id": "YAB4_ARATH", "protein_name": "Axial regulator YABBY 4", "refseq_ac": "NP_001320962", "refseq_name": "Plant-specific transcription factor YABBY family protein", "gene_name": "INO; YAB4", "gene_names_uniprotkb": "INO; YAB4; F26F24.29; F26F24_29; F28C11.6; INNER NO OUTER; INO", "gene_names_refseq": "F26F24.29; F26F24_29; INNER NO OUTER; INO", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LDT3", "url": "https://www.uniprot.org/uniprotkb/Q9LDT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "INNER NO OUTER regulates abaxial- adaxial patterning in Arabidopsis ovules.", "journal": "Genes & development", "date": "1999-12-01", "authors": "Villanueva J M, Broadhvest J, Hauser B A, Meister R J, Schneitz K, Gasser C S", "evidence": [ { "database": "UniProtKB", "id": "Q9LDT3", "url": "https://www.uniprot.org/uniprotkb/Q9LDT3" } ], "reference": [ { "type": "PubMed", "id": "10601041", "url": "https://glygen.org/publication/PubMed/10601041" } ] } ], "crossref": [ { "id": "Q9LDT3", "url": "https://www.uniprot.org/uniprotkb/Q9LDT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10601041", "url": "https://glygen.org/publication/PubMed/10601041", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "VVNKPPEKRQRAPSAYNCFI", "down_seq": "EEIRRLKAQNPSMAHKEAFS", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "KLYWSR", "comment": "In ino-4; reduced development of the ovule outer integument that fails to completely enclose the inner integument and nucellus.", "evidence": [ { "database": "UniProtKB", "id": "Q9LDT3", "url": "https://www.uniprot.org/uniprotkb/Q9LDT3" }, { "database": "PubMed", "id": "10601041", "url": "https://glygen.org/publication/PubMed/10601041" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "147", "end_pos": "147" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28148-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "P28148-1", "length": 200, "uniprot_id": "TBP2_ARATH", "protein_name": "TATA-box-binding protein 2", "refseq_ac": "NP_001321103", "refseq_name": "TATA binding protein 2", "gene_name": "TBP2", "gene_names_uniprotkb": "TBP2; ATTBP2; T5A14.8; T5A14_8; TATA binding protein 2", "gene_names_refseq": "A. THALIANA TATA BINDING PROTEIN 2; ATTBP2; T5A14.8; T5A14_8; TATA binding protein 2; TBP2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Role of the TATA binding protein-transcription factor IIB interaction in supporting basal and activated transcription in plant cells.", "journal": "The Plant cell", "date": "2000-01", "authors": "Pan S, Czarnecka-Verner E, Gurley W B", "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" } ], "reference": [ { "type": "PubMed", "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912" } ] } ], "crossref": [ { "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "VKFPIRLEGLAYSHSAFSSY", "down_seq": "PELFPGLIYRMKLPKIVLLI", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "R", "comment": "Unable to bind to TFIIB1.", "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" }, { "database": "PubMed", "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "197", "end_pos": "197" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P28148-1.146.146", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28148-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "P28148-1", "length": 200, "uniprot_id": "TBP2_ARATH", "protein_name": "TATA-box-binding protein 2", "refseq_ac": "NP_001321103", "refseq_name": "TATA binding protein 2", "gene_name": "TBP2", "gene_names_uniprotkb": "TBP2; ATTBP2; T5A14.8; T5A14_8; TATA binding protein 2", "gene_names_refseq": "A. THALIANA TATA BINDING PROTEIN 2; ATTBP2; T5A14.8; T5A14_8; TATA binding protein 2; TBP2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Role of the TATA binding protein-transcription factor IIB interaction in supporting basal and activated transcription in plant cells.", "journal": "The Plant cell", "date": "2000-01", "authors": "Pan S, Czarnecka-Verner E, Gurley W B", "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" } ], "reference": [ { "type": "PubMed", "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912" } ] } ], "crossref": [ { "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "FPIRLEGLAYSHSAFSSYEP", "down_seq": "LFPGLIYRMKLPKIVLLIFV", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "R", "comment": "Unable to bind to TFIIB1.", "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" }, { "database": "PubMed", "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "197", "end_pos": "197" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P28148-1.144.144", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28148-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "P28148-1", "length": 200, "uniprot_id": "TBP2_ARATH", "protein_name": "TATA-box-binding protein 2", "refseq_ac": "NP_001321103", "refseq_name": "TATA binding protein 2", "gene_name": "TBP2", "gene_names_uniprotkb": "TBP2; ATTBP2; T5A14.8; T5A14_8; TATA binding protein 2", "gene_names_refseq": "A. THALIANA TATA BINDING PROTEIN 2; ATTBP2; T5A14.8; T5A14_8; TATA binding protein 2; TBP2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Role of the TATA binding protein-transcription factor IIB interaction in supporting basal and activated transcription in plant cells.", "journal": "The Plant cell", "date": "2000-01", "authors": "Pan S, Czarnecka-Verner E, Gurley W B", "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" } ], "reference": [ { "type": "PubMed", "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912" } ] } ], "crossref": [ { "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "MREETYTAFENIYPVLREFR", "down_seq": "VQQ", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "No effect on the binding to TFIIB1.", "evidence": [ { "database": "UniProtKB", "id": "P28148", "url": "https://www.uniprot.org/uniprotkb/P28148" }, { "database": "PubMed", "id": "10634912", "url": "https://glygen.org/publication/PubMed/10634912" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "197", "end_pos": "197" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0C5E2-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QSFQVVNSKASHDPCPRPLN", "down_seq": "LTLHRTPFFVNPSHINFTIL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn114", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "P0C5E2-1.130.130", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RPLNNLTLHRTPFFVNPSHI", "down_seq": "FTILYNCSDHLLEDFRTYPL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P0C5E2-1.114.114", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P0C5E2-1.136.136", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.136.136", "start_pos": 136, "end_pos": 136, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TLHRTPFFVNPSHINFTILY", "down_seq": "CSDHLLEDFRTYPLTCARNT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn136", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P0C5E2-1.130.130", "categories": [ "glycosylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P0C5E2-1.155.155", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YNCSDHLLEDFRTYPLTCAR", "down_seq": "TSLLRSFGVFDRKKLGKEKQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn155", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P0C5E2-1.136.136", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EKQIASMSCQKLVDVPVLAS", "down_seq": "ESDVMGMTYVEILKRGFVLN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn193", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "P0C5E2-1.213.213", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NESDVMGMTYVEILKRGFVL", "down_seq": "WTANSCFRCITSGGRCGTDQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn213", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P0C5E2-1.193.193", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.504.504", "start_pos": 504, "end_pos": 504, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGLSRLFPMDKTHVSTAPQG", "down_seq": "PGYVDPDYHLCYQLSNKSDV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr504", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "site_lbl": "Thr504" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P0C5E2-1.498.498", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P0C5E2-1.499.499", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P0C5E2-1.512.512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CDDEEKLPVLGISGEEYVIK", "down_seq": "ISYLTQSFQVVNSKASHDPC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn88", "evidence": [ { "id": "P0C5E2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C5E2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.415.415", "start_pos": 415, "end_pos": 415, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PNLVALFGCSSKQSRDLLLV", "down_seq": "EYVANGTLADHLHGPQANPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "site_lbl": "Tyr415" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.498.498", "start_pos": 498, "end_pos": 498, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NVKVADFGLSRLFPMDKTHV", "down_seq": "TAPQGTPGYVDPDYHLCYQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "site_lbl": "Ser498" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P0C5E2-1.499.499", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P0C5E2-1.504.504", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P0C5E2-1.512.512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.499.499", "start_pos": 499, "end_pos": 499, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VKVADFGLSRLFPMDKTHVS", "down_seq": "APQGTPGYVDPDYHLCYQLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "site_lbl": "Thr499" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P0C5E2-1.498.498", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P0C5E2-1.504.504", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P0C5E2-1.512.512", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.512.512", "start_pos": 512, "end_pos": 512, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MDKTHVSTAPQGTPGYVDPD", "down_seq": "HLCYQLSNKSDVYSFAVVLM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "site_lbl": "Tyr512" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P0C5E2-1.498.498", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P0C5E2-1.499.499", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P0C5E2-1.504.504", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0C5E2-1.633.633", "start_pos": 633, "end_pos": 633, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTRIQNNGFGSEMDVVDVNK", "down_seq": "GPLVAQSPDSVIVKWDSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser633" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P0C5E2-1.640.640", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P0C5E2-1.643.643", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0C5E2-1.640.640", "start_pos": 640, "end_pos": 640, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GFGSEMDVVDVNKSGPLVAQ", "down_seq": "PDSVIVKWDSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser640" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P0C5E2-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P0C5E2-1.643.643", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0C5E2-1.643.643", "start_pos": 643, "end_pos": 643, "uniprot_canonical_ac": "P0C5E2-1", "length": 651, "uniprot_id": "LRL12_ARATH", "protein_name": "LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2", "refseq_ac": "NP_001154349", "refseq_name": "Serine/Threonine kinase family catalytic domain protein", "gene_name": "BEE1; LRK10L-1.2", "gene_names_uniprotkb": "BEE1; LRK10L-1.2; BR enhanced expression 1; F15H18.11; F15H18.25; F15H18_11; LRK10L1", "gene_names_refseq": "F15H18.25; F15H18_25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0C5E2", "url": "https://www.uniprot.org/uniprotkb/P0C5E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEMDVVDVNKSGPLVAQSPD", "down_seq": "VIVKWDSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P0C5E2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0C5E2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser643" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "415", "end_pos": "415" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "512", "end_pos": "512" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "640", "end_pos": "640" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P0C5E2-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P0C5E2-1.640.640", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93024-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "P93024-1", "length": 902, "uniprot_id": "ARFE_ARATH", "protein_name": "Auxin response factor 5", "refseq_ac": "NP_173414", "refseq_name": "Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein", "gene_name": "ARF5; MP", "gene_names_uniprotkb": "ARF5; MP; ARF5; AUXIN RESPONSE FACTOR 5; F6F9.10; F6F9_10; IAA24; MONOPTEROS; MP; TRANSCRIPTION FACTOR IAA24", "gene_names_refseq": "ARF5; AUXIN RESPONSE FACTOR 5; F6F9.10; F6F9_10; IAA24; MONOPTEROS; MP; TRANSCRIPTION FACTOR IAA24; indole-3-acetic acid inducible 24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93024", "url": "https://www.uniprot.org/uniprotkb/P93024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P93024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93024" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "P93024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93024", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GMRFGMMFETEDSGKRRYMG", "down_seq": "IVGISDLDPLRWPGSKWRNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93024" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr346" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "346", "end_pos": "346" }, { "start_pos": "439", "end_pos": "439" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93024-1.439.439", "start_pos": 439, "end_pos": 439, "uniprot_canonical_ac": "P93024-1", "length": 902, "uniprot_id": "ARFE_ARATH", "protein_name": "Auxin response factor 5", "refseq_ac": "NP_173414", "refseq_name": "Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein", "gene_name": "ARF5; MP", "gene_names_uniprotkb": "ARF5; MP; ARF5; AUXIN RESPONSE FACTOR 5; F6F9.10; F6F9_10; IAA24; MONOPTEROS; MP; TRANSCRIPTION FACTOR IAA24", "gene_names_refseq": "ARF5; AUXIN RESPONSE FACTOR 5; F6F9.10; F6F9_10; IAA24; MONOPTEROS; MP; TRANSCRIPTION FACTOR IAA24; indole-3-acetic acid inducible 24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93024", "url": "https://www.uniprot.org/uniprotkb/P93024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93024" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P93024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93024", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GSLIKRPLIRVPDSANGIMP", "down_seq": "ASFPSMASEQLMKMMMRPHN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93024" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr439" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "346", "end_pos": "346" }, { "start_pos": "439", "end_pos": "439" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6Q151-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "Q6Q151-1", "length": 506, "uniprot_id": "CYP59_ARATH", "protein_name": "Peptidyl-prolyl cis-trans isomerase CYP59", "refseq_ac": "NP_175776", "refseq_name": "cyclophilin 59", "gene_name": "CYP59", "gene_names_uniprotkb": "CYP59; ATCYP59; CYCLOPHILIN 59; F22G10.24; F22G10_24; cyclophilin 59", "gene_names_refseq": "ATCYP59; CYCLOPHILIN 59; CYP59; F22G10.24; F22G10_24; cyclophilin 59", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6Q151", "url": "https://www.uniprot.org/uniprotkb/Q6Q151" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6Q151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6Q151" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q6Q151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6Q151" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q6Q151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6Q151", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HILDDPFDDPPQLAEMMPDA", "down_seq": "PEGKPKEEVKDDVRLEDDWV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6Q151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6Q151" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser180" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "407", "end_pos": "407" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6Q151-1.407.407", "start_pos": 407, "end_pos": 407, "uniprot_canonical_ac": "Q6Q151-1", "length": 506, "uniprot_id": "CYP59_ARATH", "protein_name": "Peptidyl-prolyl cis-trans isomerase CYP59", "refseq_ac": "NP_175776", "refseq_name": "cyclophilin 59", "gene_name": "CYP59", "gene_names_uniprotkb": "CYP59; ATCYP59; CYCLOPHILIN 59; F22G10.24; F22G10_24; cyclophilin 59", "gene_names_refseq": "ATCYP59; CYCLOPHILIN 59; CYP59; F22G10.24; F22G10_24; cyclophilin 59", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6Q151", "url": "https://www.uniprot.org/uniprotkb/Q6Q151" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6Q151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6Q151" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6Q151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6Q151", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HETPKHNSHERERSEKIQRR", "down_seq": "PHGNGEGKRQHRDERDDGRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6Q151", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6Q151" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser407" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "407", "end_pos": "407" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94BM7-1.422.422", "start_pos": 422, "end_pos": 422, "uniprot_canonical_ac": "Q94BM7-1", "length": 794, "uniprot_id": "SPA4_ARATH", "protein_name": "Protein SPA1-RELATED 4", "refseq_ac": "NP_001321533", "refseq_name": "SPA1-related 4", "gene_name": "SPA4", "gene_names_uniprotkb": "SPA4; F8L10.5; F8L10_5; SPA1-related 4", "gene_names_refseq": "F8L10.5; F8L10_5; SPA1-related 4; SPA4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94BM7", "url": "https://www.uniprot.org/uniprotkb/Q94BM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q94BM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94BM7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q94BM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94BM7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRYRQIKAATAAEKPLARYY", "down_seq": "ALSCNGRSSEKSSMSQPSKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94BM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94BM7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser422" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "422", "end_pos": "422" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94BM7-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q94BM7-1", "length": 794, "uniprot_id": "SPA4_ARATH", "protein_name": "Protein SPA1-RELATED 4", "refseq_ac": "NP_001321533", "refseq_name": "SPA1-related 4", "gene_name": "SPA4", "gene_names_uniprotkb": "SPA4; F8L10.5; F8L10_5; SPA1-related 4", "gene_names_refseq": "F8L10.5; F8L10_5; SPA1-related 4; SPA4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94BM7", "url": "https://www.uniprot.org/uniprotkb/Q94BM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q94BM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94BM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKG", "down_seq": "SESSSRGLNNTSGVSEFCTD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94BM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94BM7" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "422", "end_pos": "422" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9M9Y4-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q9M9Y4-1", "length": 421, "uniprot_id": "DRIP1_ARATH", "protein_name": "E3 ubiquitin protein ligase DRIP1", "refseq_ac": "NP_172162", "refseq_name": "DREB2A-interacting protein 1", "gene_name": "DRIP1", "gene_names_uniprotkb": "DRIP1; DREB2A-interacting protein 1; F4H5.14; F4H5_14", "gene_names_refseq": "DREB2A-interacting protein 1; DRIP1; F4H5.14; F4H5_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M9Y4", "url": "https://www.uniprot.org/uniprotkb/Q9M9Y4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTRKELRNGSLAERTVKKEE", "down_seq": "SGDELLESTSSPDTLNKFTQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser150" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "284", "end_pos": "284" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9M9Y4-1.151.151", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9M9Y4-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q9M9Y4-1", "length": 421, "uniprot_id": "DRIP1_ARATH", "protein_name": "E3 ubiquitin protein ligase DRIP1", "refseq_ac": "NP_172162", "refseq_name": "DREB2A-interacting protein 1", "gene_name": "DRIP1", "gene_names_uniprotkb": "DRIP1; DREB2A-interacting protein 1; F4H5.14; F4H5_14", "gene_names_refseq": "DREB2A-interacting protein 1; DRIP1; F4H5.14; F4H5_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M9Y4", "url": "https://www.uniprot.org/uniprotkb/Q9M9Y4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRKELRNGSLAERTVKKEES", "down_seq": "GDELLESTSSPDTLNKFTQN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "284", "end_pos": "284" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9M9Y4-1.150.150", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9M9Y4-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "Q9M9Y4-1", "length": 421, "uniprot_id": "DRIP1_ARATH", "protein_name": "E3 ubiquitin protein ligase DRIP1", "refseq_ac": "NP_172162", "refseq_name": "DREB2A-interacting protein 1", "gene_name": "DRIP1", "gene_names_uniprotkb": "DRIP1; DREB2A-interacting protein 1; F4H5.14; F4H5_14", "gene_names_refseq": "DREB2A-interacting protein 1; DRIP1; F4H5.14; F4H5_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M9Y4", "url": "https://www.uniprot.org/uniprotkb/Q9M9Y4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DPTTSETVTPKRMRTTQRKR", "down_seq": "ATTLGDSRNLPQPDESSAKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M9Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9Y4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser284" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "284", "end_pos": "284" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C9E3-1.191.200", "start_pos": 191, "end_pos": 200, "uniprot_canonical_ac": "Q9C9E3-1", "length": 269, "uniprot_id": "TI11B_ARATH", "protein_name": "Protein TIFY 11B", "refseq_ac": "NP_565043", "refseq_name": "jasmonate-zim-domain protein 6", "gene_name": "JAZ6; TIFY11B", "gene_names_uniprotkb": "JAZ6; TIFY11B; JAZ6; T10D10.8; T10D10_8; TIFY DOMAIN PROTEIN 11B; TIFY11B; jasmonate-zim-domain protein 6", "gene_names_refseq": "JAZ6; T10D10.8; T10D10_8; TIFY DOMAIN PROTEIN 11B; TIFY11B; jasmonate-zim-domain protein 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C9E3", "url": "https://www.uniprot.org/uniprotkb/Q9C9E3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Bacterial effector activates jasmonate signaling by directly targeting JAZ transcriptional repressors.", "journal": "PLoS pathogens", "date": "2013-10", "authors": "Jiang Shushu, Yao Jian, Ma Ka-Wai, Zhou Huanbin, Song Jikui, He Sheng Yang, Ma Wenbo", "evidence": [ { "database": "UniProtKB", "id": "Q9C9E3", "url": "https://www.uniprot.org/uniprotkb/Q9C9E3" } ], "reference": [ { "type": "PubMed", "id": "24204266", "url": "https://glygen.org/publication/PubMed/24204266" } ] } ], "crossref": [ { "id": "Q9C9E3", "url": "https://www.uniprot.org/uniprotkb/Q9C9E3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24204266", "url": "https://glygen.org/publication/PubMed/24204266", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "SLHRFFAKRK", "start_aa": "S", "up_seq": "NEDQETGQQHQVVERIARRA", "down_seq": "DRAVARAPYQVNQHGSHLPP", "mutagenesis": [ { "sequence_org": "SLHRFFAKRK", "sequence_mut": "", "comment": "Impaired interaction with Pseudomonas syringae HopZ1a associated with the loss of HopZ1a-mediated acetylation and altered HopZ1a-triggered degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q9C9E3", "url": "https://www.uniprot.org/uniprotkb/Q9C9E3" }, { "database": "PubMed", "id": "24204266", "url": "https://glygen.org/publication/PubMed/24204266" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "191", "end_pos": "200" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82798-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "O82798-1", "length": 259, "uniprot_id": "ARR4_ARATH", "protein_name": "Two-component response regulator ARR4", "refseq_ac": "NP_172517", "refseq_name": "response regulator 4", "gene_name": "ARR4", "gene_names_uniprotkb": "ARR4; ATRR1; IBC7; INDUCED BY CYTOKININ 7; MEE7; RESPONCE REGULATOR 1; T10O24.8; T10O24_8; response regulator 4", "gene_names_refseq": "ARR4; ATRR1; IBC7; INDUCED BY CYTOKININ 7; MEE7; RESPONCE REGULATOR 1; T10O24.8; T10O24_8; maternal effect embryo arrest 7; response regulator 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82798", "url": "https://www.uniprot.org/uniprotkb/O82798" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82798", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82798", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGAQDFLLKPVKLADVKRLR", "down_seq": "HLTKDVKLSNGNKRKLPEDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82798", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82798" } ], "site_lbl": "Ser159" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "255", "end_pos": "255" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O82798-1.162.162", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82798-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "O82798-1", "length": 259, "uniprot_id": "ARR4_ARATH", "protein_name": "Two-component response regulator ARR4", "refseq_ac": "NP_172517", "refseq_name": "response regulator 4", "gene_name": "ARR4", "gene_names_uniprotkb": "ARR4; ATRR1; IBC7; INDUCED BY CYTOKININ 7; MEE7; RESPONCE REGULATOR 1; T10O24.8; T10O24_8; response regulator 4", "gene_names_refseq": "ARR4; ATRR1; IBC7; INDUCED BY CYTOKININ 7; MEE7; RESPONCE REGULATOR 1; T10O24.8; T10O24_8; maternal effect embryo arrest 7; response regulator 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82798", "url": "https://www.uniprot.org/uniprotkb/O82798" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82798", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82798", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QDFLLKPVKLADVKRLRSHL", "down_seq": "KDVKLSNGNKRKLPEDSSSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82798", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82798" } ], "site_lbl": "Thr162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "255", "end_pos": "255" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O82798-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82798-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "O82798-1", "length": 259, "uniprot_id": "ARR4_ARATH", "protein_name": "Two-component response regulator ARR4", "refseq_ac": "NP_172517", "refseq_name": "response regulator 4", "gene_name": "ARR4", "gene_names_uniprotkb": "ARR4; ATRR1; IBC7; INDUCED BY CYTOKININ 7; MEE7; RESPONCE REGULATOR 1; T10O24.8; T10O24_8; response regulator 4", "gene_names_refseq": "ARR4; ATRR1; IBC7; INDUCED BY CYTOKININ 7; MEE7; RESPONCE REGULATOR 1; T10O24.8; T10O24_8; maternal effect embryo arrest 7; response regulator 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82798", "url": "https://www.uniprot.org/uniprotkb/O82798" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O82798", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82798" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O82798", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82798", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDDVLTSSSEESPIRRQKMR", "down_seq": "PGLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82798", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82798" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser255" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "255", "end_pos": "255" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94CL9-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q94CL9-1", "length": 195, "uniprot_id": "KRP7_ARATH", "protein_name": "Cyclin-dependent kinase inhibitor 7", "refseq_ac": "NP_175385", "refseq_name": "Cyclin-dependent kinase inhibitor family protein", "gene_name": "ICK5; KRP7", "gene_names_uniprotkb": "ICK5; KRP7; AtKRP7; F14J22.14; F14J22_14; ICK5; ICN6; KIP-RELATED PROTEIN 7; KRP7", "gene_names_refseq": "AtKRP7; F14J22.14; F14J22_14; ICK5; ICN6; KIP-RELATED PROTEIN 7; KRP7", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94CL9", "url": "https://www.uniprot.org/uniprotkb/Q94CL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation of p27(KIP1) homologs KRP6 and 7 by SNF1-related protein kinase-1 links plant energy homeostasis and cell proliferation.", "journal": "The Plant journal : for cell and molecular biology", "date": "2013-08", "authors": "Gu\u00e9rinier Thomas, Millan Laurine, Crozet Pierre, Oury C\u00e9line, Rey Fran\u00e7ois, Valot Benoit, Mathieu Chantal, Vidal Jean, Hodges Michael, Thomas Martine, Glab Nathalie", "evidence": [ { "database": "UniProtKB", "id": "Q94CL9", "url": "https://www.uniprot.org/uniprotkb/Q94CL9" }, { "database": "iPTMnet", "id": "Q94CL9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CL9" } ], "reference": [ { "type": "PubMed", "id": "23617622", "url": "https://glygen.org/publication/PubMed/23617622" } ] } ], "crossref": [ { "id": "Q94CL9", "url": "https://www.uniprot.org/uniprotkb/Q94CL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q94CL9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CL9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23617622", "url": "https://glygen.org/publication/PubMed/23617622", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TTEMRDQRKTEKKKKMEKSP", "down_seq": "QAELDDFFSAAERYEQKRFT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by KIN10", "evidence": [ { "database": "UniProtKB", "id": "Q94CL9", "url": "https://www.uniprot.org/uniprotkb/Q94CL9" }, { "database": "iPTMnet", "id": "Q94CL9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94CL9" }, { "database": "PubMed", "id": "23617622", "url": "https://glygen.org/publication/PubMed/23617622" } ], "site_lbl": "Thr151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA2-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "Q84MA2-1", "length": 590, "uniprot_id": "IP5P1_ARATH", "protein_name": "Type I inositol polyphosphate 5-phosphatase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "IP5P1; IP5PI", "gene_names_uniprotkb": "IP5P1; IP5PI; 5P1; AT5P1; AT5PTASE1; ATIP5PI; F12G12.6; F12G12_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLIRDALNRVQPRKLKIKSH", "down_seq": "DPPSPSKFKQPEEVPYSVED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser187" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q84MA2-1.191.191", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA2-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "Q84MA2-1", "length": 590, "uniprot_id": "IP5P1_ARATH", "protein_name": "Type I inositol polyphosphate 5-phosphatase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "IP5P1; IP5PI", "gene_names_uniprotkb": "IP5P1; IP5PI; 5P1; AT5P1; AT5PTASE1; ATIP5PI; F12G12.6; F12G12_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DALNRVQPRKLKIKSHSDPP", "down_seq": "PSKFKQPEEVPYSVEDMFVE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser191" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q84MA2-1.187.187", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA2-1.270.270", "start_pos": 270, "end_pos": 270, "uniprot_canonical_ac": "Q84MA2-1", "length": 590, "uniprot_id": "IP5P1_ARATH", "protein_name": "Type I inositol polyphosphate 5-phosphatase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "IP5P1; IP5PI", "gene_names_uniprotkb": "IP5P1; IP5PI; 5P1; AT5P1; AT5PTASE1; ATIP5PI; F12G12.6; F12G12_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSTNDNASCLPIQEYLQRQF", "down_seq": "TPNTPDRSLSMQINSDSKRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser270" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q84MA2-1.274.274", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q84MA2-1.280.280", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA2-1.274.274", "start_pos": 274, "end_pos": 274, "uniprot_canonical_ac": "Q84MA2-1", "length": 590, "uniprot_id": "IP5P1_ARATH", "protein_name": "Type I inositol polyphosphate 5-phosphatase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "IP5P1; IP5PI", "gene_names_uniprotkb": "IP5P1; IP5PI; 5P1; AT5P1; AT5PTASE1; ATIP5PI; F12G12.6; F12G12_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DNASCLPIQEYLQRQFSTPN", "down_seq": "PDRSLSMQINSDSKREERFS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr274" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q84MA2-1.270.270", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q84MA2-1.280.280", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA2-1.280.280", "start_pos": 280, "end_pos": 280, "uniprot_canonical_ac": "Q84MA2-1", "length": 590, "uniprot_id": "IP5P1_ARATH", "protein_name": "Type I inositol polyphosphate 5-phosphatase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "IP5P1; IP5PI", "gene_names_uniprotkb": "IP5P1; IP5PI; 5P1; AT5P1; AT5PTASE1; ATIP5PI; F12G12.6; F12G12_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PIQEYLQRQFSTPNTPDRSL", "down_seq": "MQINSDSKREERFSYTERVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser280" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q84MA2-1.270.270", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q84MA2-1.274.274", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA2-1.461.461", "start_pos": 461, "end_pos": 461, "uniprot_canonical_ac": "Q84MA2-1", "length": 590, "uniprot_id": "IP5P1_ARATH", "protein_name": "Type I inositol polyphosphate 5-phosphatase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "IP5P1; IP5PI", "gene_names_uniprotkb": "IP5P1; IP5PI; 5P1; AT5P1; AT5PTASE1; ATIP5PI; F12G12.6; F12G12_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ICNHERIIWLGDLNYRINLS", "down_seq": "EKTHELIARKEWQRLVEYDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "site_lbl": "Tyr461" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84MA2-1.60.60", "start_pos": 60, "end_pos": 60, "uniprot_canonical_ac": "Q84MA2-1", "length": 590, "uniprot_id": "IP5P1_ARATH", "protein_name": "Type I inositol polyphosphate 5-phosphatase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "IP5P1; IP5PI", "gene_names_uniprotkb": "IP5P1; IP5PI; 5P1; AT5P1; AT5PTASE1; ATIP5PI; F12G12.6; F12G12_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" }, { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" }, { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] } ], "crossref": [ { "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NVSASESDYSADSDDDYEDR", "down_seq": "QEFDPISSGVTNPRVDTDGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ], "site_lbl": "Ser60" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MA2-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "Q84MA2-1", "length": 590, "uniprot_id": "IP5P1_ARATH", "protein_name": "Type I inositol polyphosphate 5-phosphatase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "IP5P1; IP5PI", "gene_names_uniprotkb": "IP5P1; IP5PI; 5P1; AT5P1; AT5PTASE1; ATIP5PI; F12G12.6; F12G12_6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MA2", "url": "https://www.uniprot.org/uniprotkb/Q84MA2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NPRVDTDGNVIYRPKLRRRN", "down_seq": "ETFRMQYIDTKAIRICAGTW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84MA2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84MA2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser92" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "270", "end_pos": "270" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "92", "end_pos": "92" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7XJU2-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q7XJU2-1", "length": 149, "uniprot_id": "BH153_ARATH", "protein_name": "Transcription factor bHLH153", "refseq_ac": "NP_001184916", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "BHLH153", "gene_names_uniprotkb": "BHLH153; F3F20.16; F3F20_16", "gene_names_refseq": "F3F20.16; F3F20_16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7XJU2", "url": "https://www.uniprot.org/uniprotkb/Q7XJU2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q7XJU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XJU2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q7XJU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XJU2" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q7XJU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XJU2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TVGVAQSNGADIWAPVKTPL", "down_seq": "PAFSVTSQSPFR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q7XJU2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7XJU2" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FPE8-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "Q9FPE8-1", "length": 344, "uniprot_id": "HHO3_ARATH", "protein_name": "Transcription factor HHO3", "refseq_ac": "NP_564236", "refseq_name": "myb-like transcription factor family protein", "gene_name": "HHO3", "gene_names_uniprotkb": "HHO3; F2J7.21", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FPE8", "url": "https://www.uniprot.org/uniprotkb/Q9FPE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FQKEKPKAADSQPLIKAITP", "down_seq": "STTTTSSTAETVGGGKEFEE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr180", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "180", "end_pos": "180" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9FPE8-1.170.170", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9FPE8-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "Q9FPE8-1", "length": 344, "uniprot_id": "HHO3_ARATH", "protein_name": "Transcription factor HHO3", "refseq_ac": "NP_564236", "refseq_name": "myb-like transcription factor family protein", "gene_name": "HHO3", "gene_names_uniprotkb": "HHO3; F2J7.21", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FPE8", "url": "https://www.uniprot.org/uniprotkb/Q9FPE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FPE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FPE8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FPE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FPE8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKRSAGAFQPFQKEKPKAAD", "down_seq": "QPLIKAITPTSTTTTSSTAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FPE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FPE8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser170" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "180", "end_pos": "180" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q9FPE8-1.180.180", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FPE8-1.204.204", "start_pos": 204, "end_pos": 204, "uniprot_canonical_ac": "Q9FPE8-1", "length": 344, "uniprot_id": "HHO3_ARATH", "protein_name": "Transcription factor HHO3", "refseq_ac": "NP_564236", "refseq_name": "myb-like transcription factor family protein", "gene_name": "HHO3", "gene_names_uniprotkb": "HHO3; F2J7.21", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FPE8", "url": "https://www.uniprot.org/uniprotkb/Q9FPE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9FPE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FPE8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTSSTAETVGGGKEFEEQKQ", "down_seq": "HSNRKQRRCWSPELHRRFLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FPE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FPE8" } ], "site_lbl": "Ser204" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "180", "end_pos": "180" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9FPE8-1.317.317", "start_pos": 317, "end_pos": 317, "uniprot_canonical_ac": "Q9FPE8-1", "length": 344, "uniprot_id": "HHO3_ARATH", "protein_name": "Transcription factor HHO3", "refseq_ac": "NP_564236", "refseq_name": "myb-like transcription factor family protein", "gene_name": "HHO3", "gene_names_uniprotkb": "HHO3; F2J7.21", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FPE8", "url": "https://www.uniprot.org/uniprotkb/Q9FPE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FPE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FPE8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FPE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FPE8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTTNNRVYAPVATQPPQSST", "down_seq": "GERSNRGCKSPATSSTTTHT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FPE8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FPE8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser317" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "180", "end_pos": "180" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FE22-1.122.122", "start_pos": 122, "end_pos": 122, "uniprot_canonical_ac": "Q9FE22-1", "length": 292, "uniprot_id": "HFR1_ARATH", "protein_name": "Transcription factor HFR1", "refseq_ac": "NP_563650", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "HFR1", "gene_names_uniprotkb": "HFR1; BHLH26; EN68; FBI1; LONG HYPOCOTYL IN FAR-RED; REP1; RSF1; T6A9.4; T6A9_13; T6A9_4", "gene_names_refseq": "FBI1; HFR1; LONG HYPOCOTYL IN FAR-RED; REDUCED PHYTOCHROME SIGNALING 1; REDUCED SENSITIVITY TO FAR-RED LIGHT 1; REP1; RSF1; T6A9.4; T6A9_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FE22", "url": "https://www.uniprot.org/uniprotkb/Q9FE22" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Multisite phosphorylation of Arabidopsis HFR1 by casein kinase II and a plausible role in regulating its degradation rate.", "journal": "The Journal of biological chemistry", "date": "2008-08-22", "authors": "Park Hee-Jin, Ding Lei, Dai Mingqiu, Lin Rongcheng, Wang Haiyang", "evidence": [ { "database": "iPTMnet", "id": "Q9FE22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FE22" } ], "reference": [ { "type": "PubMed", "id": "18556661", "url": "https://glygen.org/publication/PubMed/18556661" } ] } ], "crossref": [ { "id": "Q9FE22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FE22", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18556661", "url": "https://glygen.org/publication/PubMed/18556661", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RFYLRNKHENPKKRRIQVLS", "down_seq": "DDESEEFTREVPSVTRKGSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9ZWB3-1", "kinase_gene_name": "CKL9", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FE22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FE22" }, { "database": "PubMed", "id": "18556661", "url": "https://glygen.org/publication/PubMed/18556661" } ], "site_lbl": "Ser122" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FE22-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q9FE22-1", "length": 292, "uniprot_id": "HFR1_ARATH", "protein_name": "Transcription factor HFR1", "refseq_ac": "NP_563650", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "HFR1", "gene_names_uniprotkb": "HFR1; BHLH26; EN68; FBI1; LONG HYPOCOTYL IN FAR-RED; REP1; RSF1; T6A9.4; T6A9_13; T6A9_4", "gene_names_refseq": "FBI1; HFR1; LONG HYPOCOTYL IN FAR-RED; REDUCED PHYTOCHROME SIGNALING 1; REDUCED SENSITIVITY TO FAR-RED LIGHT 1; REP1; RSF1; T6A9.4; T6A9_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FE22", "url": "https://www.uniprot.org/uniprotkb/Q9FE22" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Multisite phosphorylation of Arabidopsis HFR1 by casein kinase II and a plausible role in regulating its degradation rate.", "journal": "The Journal of biological chemistry", "date": "2008-08-22", "authors": "Park Hee-Jin, Ding Lei, Dai Mingqiu, Lin Rongcheng, Wang Haiyang", "evidence": [ { "database": "iPTMnet", "id": "Q9FE22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FE22" } ], "reference": [ { "type": "PubMed", "id": "18556661", "url": "https://glygen.org/publication/PubMed/18556661" } ] } ], "crossref": [ { "id": "Q9FE22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FE22", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18556661", "url": "https://glygen.org/publication/PubMed/18556661", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNDVGSLAVKDQGMMSERAR", "down_seq": "DEDRLINGLKWGYGYFDHDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9ZWB3-1", "kinase_gene_name": "CKL9", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FE22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FE22" }, { "database": "PubMed", "id": "18556661", "url": "https://glygen.org/publication/PubMed/18556661" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45951-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "P45951-1", "length": 536, "uniprot_id": "ARP_ARATH", "protein_name": "DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic", "refseq_ac": "NP_181677", "refseq_name": "apurinic endonuclease-redox protein", "gene_name": "ARP", "gene_names_uniprotkb": "ARP; REF; T26J13.5; T26J13_5", "gene_names_refseq": "ARP; T26J13.5; T26J13_5; apurinic endonuclease-redox protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45951", "url": "https://www.uniprot.org/uniprotkb/P45951" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Requirement for abasic endonuclease gene homologues in Arabidopsis seed development.", "journal": "PloS one", "date": "2009", "authors": "Murphy Terence M, Belmonte Mark, Shu Stephanie, Britt Anne B, Hatteroth James", "evidence": [ { "database": "UniProtKB", "id": "P45951", "url": "https://www.uniprot.org/uniprotkb/P45951" } ], "reference": [ { "type": "PubMed", "id": "19172180", "url": "https://glygen.org/publication/PubMed/19172180" } ] } ], "crossref": [ { "id": "P45951", "url": "https://www.uniprot.org/uniprotkb/P45951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19172180", "url": "https://glygen.org/publication/PubMed/19172180", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "HSFWSCSVSKLGYSGTAIIS", "down_seq": "IKPLSVRYGTGLSGHDTEGR", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "W", "comment": "In arp-1; loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "P45951", "url": "https://www.uniprot.org/uniprotkb/P45951" }, { "database": "PubMed", "id": "19172180", "url": "https://glygen.org/publication/PubMed/19172180" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45951-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "P45951-1", "length": 536, "uniprot_id": "ARP_ARATH", "protein_name": "DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic", "refseq_ac": "NP_181677", "refseq_name": "apurinic endonuclease-redox protein", "gene_name": "ARP", "gene_names_uniprotkb": "ARP; REF; T26J13.5; T26J13_5", "gene_names_refseq": "ARP; T26J13.5; T26J13_5; apurinic endonuclease-redox protein", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P45951", "url": "https://www.uniprot.org/uniprotkb/P45951" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P45951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45951" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P45951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45951", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AKEQKSLMRTGKQQIQSKEE", "down_seq": "SSTISSELLKTEEIISSPSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P45951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45951" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr220" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82533-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "O82533-1", "length": 478, "uniprot_id": "FTZ21_ARATH", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "refseq_ac": "NP_001323530", "refseq_name": "Tubulin/FtsZ family protein", "gene_name": "FTSZ2-1", "gene_names_uniprotkb": "FTSZ2-1; ATFTSZ2-1; F2H17.14; F2H17_14; FTSZ", "gene_names_refseq": "ATFTSZ2-1; F2H17.14; F2H17_14; FTSZ2-1; FTSZ", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "In vivo phosphorylation of FtsZ2 in Arabidopsis thaliana.", "journal": "The Biochemical journal", "date": "2012-09-15", "authors": "Gargano Daniela, Maple-Gr\u00f8dem Jodi, M\u00f8ller Simon G", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" }, { "database": "iPTMnet", "id": "O82533", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82533" } ], "reference": [ { "type": "PubMed", "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492" } ] } ], "crossref": [ { "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O82533", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82533", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VIGVGGGGSNAVNRMIESEM", "down_seq": "GVEFWIVNTDIQAMRMSPVL", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced interaction with FTSZ1-1 and FTSZ2-2 and inpaired interaction with FTSZ2-1 and ARC6. Lost ability to form contractile ring at the chloroplast midpoint.", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" }, { "database": "PubMed", "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PGK1", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" }, { "database": "iPTMnet", "id": "O82533", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82533" }, { "database": "PubMed", "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492" } ], "site_lbl": "Ser143" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "466", "end_pos": "466" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "286", "end_pos": "286" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82533-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "O82533-1", "length": 478, "uniprot_id": "FTZ21_ARATH", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "refseq_ac": "NP_001323530", "refseq_name": "Tubulin/FtsZ family protein", "gene_name": "FTSZ2-1", "gene_names_uniprotkb": "FTSZ2-1; ATFTSZ2-1; F2H17.14; F2H17_14; FTSZ", "gene_names_refseq": "ATFTSZ2-1; F2H17.14; F2H17_14; FTSZ2-1; FTSZ", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "In vivo phosphorylation of FtsZ2 in Arabidopsis thaliana.", "journal": "The Biochemical journal", "date": "2012-09-15", "authors": "Gargano Daniela, Maple-Gr\u00f8dem Jodi, M\u00f8ller Simon G", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" }, { "database": "iPTMnet", "id": "O82533", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82533" } ], "reference": [ { "type": "PubMed", "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492" } ] } ], "crossref": [ { "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NVDTLIVIPNDKLLTAVSQS", "down_seq": "PVTEAFNLADDILRQGVRGI", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "V", "comment": "Normal interaction with FtsZ proteins and with ARC6. Lost ability to form contractile ring at the chloroplast midpoint.", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" }, { "database": "PubMed", "id": "22823492", "url": "https://glygen.org/publication/PubMed/22823492" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PGK1", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "site_lbl": "Thr286" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "466", "end_pos": "466" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "286", "end_pos": "286" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82533-1.322.322", "start_pos": 322, "end_pos": 322, "uniprot_canonical_ac": "O82533-1", "length": 478, "uniprot_id": "FTZ21_ARATH", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "refseq_ac": "NP_001323530", "refseq_name": "Tubulin/FtsZ family protein", "gene_name": "FTSZ2-1", "gene_names_uniprotkb": "FTSZ2-1; ATFTSZ2-1; F2H17.14; F2H17_14; FTSZ", "gene_names_refseq": "ATFTSZ2-1; F2H17.14; F2H17_14; FTSZ2-1; FTSZ", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The chloroplast division protein ARC6 acts to inhibit disassembly of GDP-bound FtsZ2.", "journal": "The Journal of biological chemistry", "date": "2018-07-06", "authors": "Sung Min Woo, Shaik Rahamthulla, TerBush Allan D, Osteryoung Katherine W, Vitha Stanislav, Holzenburg Andreas", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "reference": [ { "type": "PubMed", "id": "29769312", "url": "https://glygen.org/publication/PubMed/29769312" } ] }, { "title": "GTP-dependent heteropolymer formation and bundling of chloroplast FtsZ1 and FtsZ2.", "journal": "The Journal of biological chemistry", "date": "2010-07-02", "authors": "Olson Bradley J S C, Wang Qiang, Osteryoung Katherine W", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "reference": [ { "type": "PubMed", "id": "20421292", "url": "https://glygen.org/publication/PubMed/20421292" } ] } ], "crossref": [ { "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29769312", "url": "https://glygen.org/publication/PubMed/29769312", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20421292", "url": "https://glygen.org/publication/PubMed/20421292", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "GVRGISDIITIPGLVNVDFA", "down_seq": "VRAIMANAGSSLMGIGTATG", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Impaired GTPase activity leading to the lack of GDP binding and the formation of aster-shaped structures of more stable filaments associated with a weaker ARC6-binding.", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" }, { "database": "PubMed", "id": "29769312", "url": "https://glygen.org/publication/PubMed/29769312" }, { "database": "PubMed", "id": "20421292", "url": "https://glygen.org/publication/PubMed/20421292" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "466", "end_pos": "466" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "286", "end_pos": "286" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82533-1.466.466", "start_pos": 466, "end_pos": 466, "uniprot_canonical_ac": "O82533-1", "length": 478, "uniprot_id": "FTZ21_ARATH", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "refseq_ac": "NP_001323530", "refseq_name": "Tubulin/FtsZ family protein", "gene_name": "FTSZ2-1", "gene_names_uniprotkb": "FTSZ2-1; ATFTSZ2-1; F2H17.14; F2H17_14; FTSZ", "gene_names_refseq": "ATFTSZ2-1; F2H17.14; F2H17_14; FTSZ2-1; FTSZ", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plastid division is mediated by combinatorial assembly of plastid division proteins.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-09", "authors": "Maple Jodi, Aldridge Cassie, M\u00f8ller Simon Geir", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "reference": [ { "type": "PubMed", "id": "16146521", "url": "https://glygen.org/publication/PubMed/16146521" } ] }, { "title": "Roles of Arabidopsis PARC6 in Coordination of the Chloroplast Division Complex and Negative Regulation of FtsZ Assembly.", "journal": "Plant physiology", "date": "2016-01", "authors": "Zhang Min, Chen Cheng, Froehlich John E, TerBush Allan D, Osteryoung Katherine W", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" } ], "reference": [ { "type": "PubMed", "id": "26527658", "url": "https://glygen.org/publication/PubMed/26527658" } ] } ], "crossref": [ { "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16146521", "url": "https://glygen.org/publication/PubMed/16146521", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26527658", "url": "https://glygen.org/publication/PubMed/26527658", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "GATRRPSSSFRESGSVEIPE", "down_seq": "LKKKGSSRYPRV", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced ARC6 binding and abolished CDP1/PARC6 binding.", "evidence": [ { "database": "UniProtKB", "id": "O82533", "url": "https://www.uniprot.org/uniprotkb/O82533" }, { "database": "PubMed", "id": "16146521", "url": "https://glygen.org/publication/PubMed/16146521" }, { "database": "PubMed", "id": "26527658", "url": "https://glygen.org/publication/PubMed/26527658" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "466", "end_pos": "466" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "286", "end_pos": "286" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82289-1.529.529", "start_pos": 529, "end_pos": 529, "uniprot_canonical_ac": "O82289-1", "length": 568, "uniprot_id": "SRO1_ARATH", "protein_name": "Probable inactive poly [ADP-ribose] polymerase SRO1", "refseq_ac": "NP_001323747", "refseq_name": "uncharacterized protein", "gene_name": "SRO1", "gene_names_uniprotkb": "SRO1; CEO2; T32F12.11; T32F12_11; similar to RCD one 1", "gene_names_refseq": "SRO1; T32F12.11; T32F12_11; similar to RCD one 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82289", "url": "https://www.uniprot.org/uniprotkb/O82289" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82289", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LFKAISSKIARKDMDLIIAG", "down_seq": "QELREKKVSRKEFYKTLSMI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82289" } ], "site_lbl": "Tyr529" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "529", "end_pos": "529" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43287-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P43287-1", "length": 285, "uniprot_id": "PIP22_ARATH", "protein_name": "Aquaporin PIP2-2", "refseq_ac": "NP_181254", "refseq_name": "plasma membrane intrinsic protein 2", "gene_name": "PIP2-2; PIP2B", "gene_names_uniprotkb": "PIP2-2; PIP2B; PIP2:2; PIP2B; T2N18.7; T2N18_7", "gene_names_refseq": "2; PIP2B; PIP2; PLASMA MEMBRANE INTRINSIC PROTEIN 2; T2N18.7; T2N18_7; plasma membrane intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AKDVEGPEGFQTRDYEDPPP", "down_seq": "PFFDADELTKWSLYRAVIAE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr22", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr22" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "264", "end_pos": "264" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "281", "end_pos": "281" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43287-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "P43287-1", "length": 285, "uniprot_id": "PIP22_ARATH", "protein_name": "Aquaporin PIP2-2", "refseq_ac": "NP_181254", "refseq_name": "plasma membrane intrinsic protein 2", "gene_name": "PIP2-2; PIP2B", "gene_names_uniprotkb": "PIP2-2; PIP2B; PIP2:2; PIP2B; T2N18.7; T2N18_7", "gene_names_refseq": "2; PIP2B; PIP2; PLASMA MEMBRANE INTRINSIC PROTEIN 2; T2N18.7; T2N18_7; plasma membrane intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Cytosolic pH regulates root water transport during anoxic stress through gating of aquaporins.", "journal": "Nature", "date": "2003-09-25", "authors": "Tournaire-Roux Colette, Sutka Moira, Javot H\u00e9l\u00e8ne, Gout Elisabeth, Gerbeau Patricia, Luu Doan-Trung, Bligny Richard, Maurel Christophe", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "reference": [ { "type": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] } ], "crossref": [ { "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "IGTFVLVYTVFSATDPKRNA", "down_seq": "DSHVPVLAPLPIGFAVFMVH", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduced sensitivity to cytosolic acidification. Insensitive to cytosolic acidification; when associated with A-197.", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" }, { "database": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "264", "end_pos": "264" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "281", "end_pos": "281" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P43287-1.195.195", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43287-1.197.197", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43287-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "P43287-1", "length": 285, "uniprot_id": "PIP22_ARATH", "protein_name": "Aquaporin PIP2-2", "refseq_ac": "NP_181254", "refseq_name": "plasma membrane intrinsic protein 2", "gene_name": "PIP2-2; PIP2B", "gene_names_uniprotkb": "PIP2-2; PIP2B; PIP2:2; PIP2B; T2N18.7; T2N18_7", "gene_names_refseq": "2; PIP2B; PIP2; PLASMA MEMBRANE INTRINSIC PROTEIN 2; T2N18.7; T2N18_7; plasma membrane intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Cytosolic pH regulates root water transport during anoxic stress through gating of aquaporins.", "journal": "Nature", "date": "2003-09-25", "authors": "Tournaire-Roux Colette, Sutka Moira, Javot H\u00e9l\u00e8ne, Gout Elisabeth, Gerbeau Patricia, Luu Doan-Trung, Bligny Richard, Maurel Christophe", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "reference": [ { "type": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] } ], "crossref": [ { "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "GTFVLVYTVFSATDPKRNAR", "down_seq": "SHVPVLAPLPIGFAVFMVHL", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Reduced sensitivity to cytosolic acidification. Insensitive to cytosolic acidification; when associated with A-197.", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" }, { "database": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "264", "end_pos": "264" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "281", "end_pos": "281" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P43287-1.194.194", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P43287-1.197.197", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43287-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "P43287-1", "length": 285, "uniprot_id": "PIP22_ARATH", "protein_name": "Aquaporin PIP2-2", "refseq_ac": "NP_181254", "refseq_name": "plasma membrane intrinsic protein 2", "gene_name": "PIP2-2; PIP2B", "gene_names_uniprotkb": "PIP2-2; PIP2B; PIP2:2; PIP2B; T2N18.7; T2N18_7", "gene_names_refseq": "2; PIP2B; PIP2; PLASMA MEMBRANE INTRINSIC PROTEIN 2; T2N18.7; T2N18_7; plasma membrane intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Cytosolic pH regulates root water transport during anoxic stress through gating of aquaporins.", "journal": "Nature", "date": "2003-09-25", "authors": "Tournaire-Roux Colette, Sutka Moira, Javot H\u00e9l\u00e8ne, Gout Elisabeth, Gerbeau Patricia, Luu Doan-Trung, Bligny Richard, Maurel Christophe", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "reference": [ { "type": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] } ], "crossref": [ { "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "FVLVYTVFSATDPKRNARDS", "down_seq": "VPVLAPLPIGFAVFMVHLAT", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Reduced water transport activity. Reduced sensitivity to cytosolic acidification. Insensitive to cytosolic acidification; when associated with A-194 or A-195.", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" }, { "database": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] }, { "sequence_org": "H", "sequence_mut": "D", "comment": "Reduced water transport activity. Insensitive to cytosolic acidification.", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" }, { "database": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] }, { "sequence_org": "H", "sequence_mut": "K", "comment": "Very low water transport activity. Insensitive to cytosolic acidification.", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" }, { "database": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "264", "end_pos": "264" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "281", "end_pos": "281" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P43287-1.194.194", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P43287-1.195.195", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43287-1.264.264", "start_pos": 264, "end_pos": 264, "uniprot_canonical_ac": "P43287-1", "length": 285, "uniprot_id": "PIP22_ARATH", "protein_name": "Aquaporin PIP2-2", "refseq_ac": "NP_181254", "refseq_name": "plasma membrane intrinsic protein 2", "gene_name": "PIP2-2; PIP2B", "gene_names_uniprotkb": "PIP2-2; PIP2B; PIP2:2; PIP2B; T2N18.7; T2N18_7", "gene_names_refseq": "2; PIP2B; PIP2; PLASMA MEMBRANE INTRINSIC PROTEIN 2; T2N18.7; T2N18_7; plasma membrane intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Cytosolic pH regulates root water transport during anoxic stress through gating of aquaporins.", "journal": "Nature", "date": "2003-09-25", "authors": "Tournaire-Roux Colette, Sutka Moira, Javot H\u00e9l\u00e8ne, Gout Elisabeth, Gerbeau Patricia, Luu Doan-Trung, Bligny Richard, Maurel Christophe", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "reference": [ { "type": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] } ], "crossref": [ { "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "DDHWIFWVGPFIGAAIAAFY", "down_seq": "QFVLRASGSKSLGSFRSAAN", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" }, { "database": "PubMed", "id": "14508488", "url": "https://glygen.org/publication/PubMed/14508488" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "264", "end_pos": "264" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "281", "end_pos": "281" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P43287-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P43287-1.278.278", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P43287-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43287-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "P43287-1", "length": 285, "uniprot_id": "PIP22_ARATH", "protein_name": "Aquaporin PIP2-2", "refseq_ac": "NP_181254", "refseq_name": "plasma membrane intrinsic protein 2", "gene_name": "PIP2-2; PIP2B", "gene_names_uniprotkb": "PIP2-2; PIP2B; PIP2:2; PIP2B; T2N18.7; T2N18_7", "gene_names_refseq": "2; PIP2B; PIP2; PLASMA MEMBRANE INTRINSIC PROTEIN 2; T2N18.7; T2N18_7; plasma membrane intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGAAIAAFYHQFVLRASGSK", "down_seq": "LGSFRSAANV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser275" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "264", "end_pos": "264" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "281", "end_pos": "281" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P43287-1.264.264", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43287-1.278.278", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P43287-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43287-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "P43287-1", "length": 285, "uniprot_id": "PIP22_ARATH", "protein_name": "Aquaporin PIP2-2", "refseq_ac": "NP_181254", "refseq_name": "plasma membrane intrinsic protein 2", "gene_name": "PIP2-2; PIP2B", "gene_names_uniprotkb": "PIP2-2; PIP2B; PIP2:2; PIP2B; T2N18.7; T2N18_7", "gene_names_refseq": "2; PIP2B; PIP2; PLASMA MEMBRANE INTRINSIC PROTEIN 2; T2N18.7; T2N18_7; plasma membrane intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana.", "journal": "Proteome science", "date": "2009-11-10", "authors": "Hsu Jue-Liang, Wang Lan-Yu, Wang Shu-Ying, Lin Ching-Huang, Ho Kuo-Chieh, Shi Fong-Ku, Chang Ing-Feng", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AIAAFYHQFVLRASGSKSLG", "down_seq": "FRSAANV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" }, { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser278" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "264", "end_pos": "264" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "281", "end_pos": "281" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P43287-1.264.264", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P43287-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43287-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43287-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "P43287-1", "length": 285, "uniprot_id": "PIP22_ARATH", "protein_name": "Aquaporin PIP2-2", "refseq_ac": "NP_181254", "refseq_name": "plasma membrane intrinsic protein 2", "gene_name": "PIP2-2; PIP2B", "gene_names_uniprotkb": "PIP2-2; PIP2B; PIP2:2; PIP2B; T2N18.7; T2N18_7", "gene_names_refseq": "2; PIP2B; PIP2; PLASMA MEMBRANE INTRINSIC PROTEIN 2; T2N18.7; T2N18_7; plasma membrane intrinsic protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana.", "journal": "Proteome science", "date": "2009-11-10", "authors": "Hsu Jue-Liang, Wang Lan-Yu, Wang Shu-Ying, Lin Ching-Huang, Ho Kuo-Chieh, Shi Fong-Ku, Chang Ing-Feng", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AFYHQFVLRASGSKSLGSFR", "down_seq": "AANV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P43287", "url": "https://www.uniprot.org/uniprotkb/P43287" }, { "database": "iPTMnet", "id": "P43287", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43287" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19900291", "url": "https://glygen.org/publication/PubMed/19900291" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser281" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "22", "end_pos": "22" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "264", "end_pos": "264" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "22", "end_pos": "22" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "281", "end_pos": "281" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P43287-1.264.264", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P43287-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P43287-1.278.278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82226-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "O82226-1", "length": 747, "uniprot_id": "CNGC6_ARATH", "protein_name": "Probable cyclic nucleotide-gated ion channel 6", "refseq_ac": "NP_001318278", "refseq_name": "cyclic nucleotide-gated channel 6", "gene_name": "CNGC6", "gene_names_uniprotkb": "CNGC6; ATCNGC6; T29E15.18; T29E15_18", "gene_names_refseq": "ATCNGC6; CNGC6; CYCLIC NUCLEOTIDE GATED CHANNEL 6; T29E15.18; T29E15_18; cyclic nucleotide-gated channel 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82226", "url": "https://www.uniprot.org/uniprotkb/O82226" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RLDSMDSRYSQSSETGLNKC", "down_seq": "LNIQGGPKRFAQGSKASSGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr44" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "44", "end_pos": "44" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "O82226-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82226-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "O82226-1", "length": 747, "uniprot_id": "CNGC6_ARATH", "protein_name": "Probable cyclic nucleotide-gated ion channel 6", "refseq_ac": "NP_001318278", "refseq_name": "cyclic nucleotide-gated channel 6", "gene_name": "CNGC6", "gene_names_uniprotkb": "CNGC6; ATCNGC6; T29E15.18; T29E15_18", "gene_names_refseq": "ATCNGC6; CNGC6; CYCLIC NUCLEOTIDE GATED CHANNEL 6; T29E15.18; T29E15_18; cyclic nucleotide-gated channel 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82226", "url": "https://www.uniprot.org/uniprotkb/O82226" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLNIQGGPKRFAQGSKASSG", "down_seq": "FKKGFRKGSEGLWSIGRSIG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "44", "end_pos": "44" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O82226-1.44.44", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82226-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "O82226-1", "length": 747, "uniprot_id": "CNGC6_ARATH", "protein_name": "Probable cyclic nucleotide-gated ion channel 6", "refseq_ac": "NP_001318278", "refseq_name": "cyclic nucleotide-gated channel 6", "gene_name": "CNGC6", "gene_names_uniprotkb": "CNGC6; ATCNGC6; T29E15.18; T29E15_18", "gene_names_refseq": "ATCNGC6; CNGC6; CYCLIC NUCLEOTIDE GATED CHANNEL 6; T29E15.18; T29E15_18; cyclic nucleotide-gated channel 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82226", "url": "https://www.uniprot.org/uniprotkb/O82226" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GFRKGSEGLWSIGRSIGLGV", "down_seq": "RAVFPEDLEVSEKKIFDPQD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82226", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82226" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser88" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "44", "end_pos": "44" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGPLLSKAVVRESTQVSPSA", "down_seq": "PSAAASESGLTRRTDGTDSS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr183", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q8GZM7-1.197.197", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8GZM7-1.202.202", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GZM7-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2011-04-08", "authors": "Bu Qingyun, Zhu Ling, Dennis Michael D, Yu Lu, Lu Sheen X, Person Maria D, Tobin Elaine M, Browning Karen S, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MHHFVPDFD", "down_seq": "DDDYVNNHNSSLNHLPRKSI", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of phosphorylation by CK2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CK2", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ], "site_lbl": "Thr10" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.118.160", "start_pos": 118, "end_pos": 160, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "ATATVSQVTAARPPVSSTNESRPPVRNFMNFSRLRGDFNNGRG", "start_aa": "A", "up_seq": "PLRDDDFCSDLLFSAAPTAT", "down_seq": "GESGPLLSKAVVRESTQVSP", "mutagenesis": [ { "sequence_org": "ATATVSQVTAARPPVSSTNESRPPVRNFMNFSRLRGDFNNGRG", "sequence_mut": "", "comment": "Reduced interaction with PHYA (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q8GZM7-1.144.144", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8GZM7-1.148.148", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GZM7-1.153.153", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GZM7-1.155.155", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "upstream", "id": "Q8GZM7-1.160.160", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DFCSDLLFSAAPTATATATV", "down_seq": "QVTAARPPVSSTNESRPPVR", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced interaction with PHYA (Pfr form); when associated with A-95.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QVTAARPPVSSTNESRPPVR", "down_seq": "FMNFSRLRGDFNNGRGGESG", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "A", "comment": "Loss of interaction with PHYA (Pfr form); when associated with A-95.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q8GZM7-1.118.160", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8GZM7-1.148.148", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GZM7-1.153.153", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8GZM7-1.155.155", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q8GZM7-1.160.160", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "ARPPVSSTNESRPPVRNFMN", "down_seq": "SRLRGDFNNGRGGESGPLLS", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Normal interaction with PHYA (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8GZM7-1.118.160", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8GZM7-1.144.144", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GZM7-1.153.153", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GZM7-1.155.155", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8GZM7-1.160.160", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.153.153", "start_pos": 153, "end_pos": 153, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "SSTNESRPPVRNFMNFSRLR", "down_seq": "DFNNGRGGESGPLLSKAVVR", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Reduced interaction with PHYA (Pfr form); when associated with A-95.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GZM7-1.118.160", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8GZM7-1.144.144", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GZM7-1.148.148", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GZM7-1.155.155", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GZM7-1.160.160", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "TNESRPPVRNFMNFSRLRGD", "down_seq": "NNGRGGESGPLLSKAVVRES", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Normal interaction with PHYA (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8GZM7-1.118.160", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q8GZM7-1.144.144", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8GZM7-1.148.148", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GZM7-1.153.153", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GZM7-1.160.160", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "PPVRNFMNFSRLRGDFNNGR", "down_seq": "GESGPLLSKAVVRESTQVSP", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Reduced interaction with PHYA (Pfr form); when associated with A-95.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "downstream", "id": "Q8GZM7-1.118.160", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q8GZM7-1.144.144", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q8GZM7-1.148.148", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8GZM7-1.153.153", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GZM7-1.155.155", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2011-04-08", "authors": "Bu Qingyun, Zhu Ling, Dennis Michael D, Yu Lu, Lu Sheen X, Person Maria D, Tobin Elaine M, Browning Karen S, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QVSPSATPSAAASESGLTRR", "down_seq": "DGTDSSAVAGGGAYNRKGKA", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of phosphorylation by CK2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CK2", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ], "site_lbl": "Thr197" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8GZM7-1.183.183", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GZM7-1.202.202", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.1.50", "start_pos": 1, "end_pos": 50, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "MHHFVPDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVV", "start_aa": "M", "up_seq": "", "down_seq": "VQNQRLHTKKPSSSPPKLLP", "mutagenesis": [ { "sequence_org": "MHHFVPDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVV", "sequence_mut": "", "comment": "Normal interaction with PHYA (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q8GZM7-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GZM7-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GZM7-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GZM7-1.47.47", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8GZM7-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.202.202", "start_pos": 202, "end_pos": 202, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2011-04-08", "authors": "Bu Qingyun, Zhu Ling, Dennis Michael D, Yu Lu, Lu Sheen X, Person Maria D, Tobin Elaine M, Browning Karen S, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATPSAAASESGLTRRTDGTD", "down_seq": "SAVAGGGAYNRKGKAVAMTA", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation by CK2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK2", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ], "site_lbl": "Ser202" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GZM7-1.183.183", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GZM7-1.197.197", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "SLNHLPRKSITTMGEDDDLM", "down_seq": "LLWQNGQVVVQNQRLHTKKP", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of interaction with PHYB (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8GZM7-1.1.50", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GZM7-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GZM7-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GZM7-1.47.47", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "LNHLPRKSITTMGEDDDLME", "down_seq": "LWQNGQVVVQNQRLHTKKPS", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with PHYB (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8GZM7-1.1.50", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GZM7-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GZM7-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GZM7-1.47.47", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "HLPRKSITTMGEDDDLMELL", "down_seq": "QNGQVVVQNQRLHTKKPSSS", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Reduced interaction with PHYB (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8GZM7-1.1.50", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GZM7-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GZM7-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GZM7-1.47.47", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8GZM7-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.464.464", "start_pos": 464, "end_pos": 464, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2011-04-08", "authors": "Bu Qingyun, Zhu Ling, Dennis Michael D, Yu Lu, Lu Sheen X, Person Maria D, Tobin Elaine M, Browning Karen S, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTQPPQFQNQATSYPSSSRV", "down_seq": "SSKESEDHGNHTTG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation by CK2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK2", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ], "site_lbl": "Ser464" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8GZM7-1.465.465", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GZM7-1.466.466", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GZM7-1.469.469", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.465.465", "start_pos": 465, "end_pos": 465, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2011-04-08", "authors": "Bu Qingyun, Zhu Ling, Dennis Michael D, Yu Lu, Lu Sheen X, Person Maria D, Tobin Elaine M, Browning Karen S, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TQPPQFQNQATSYPSSSRVS", "down_seq": "SKESEDHGNHTTG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation by CK2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK2", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ], "site_lbl": "Ser465" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8GZM7-1.464.464", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GZM7-1.466.466", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8GZM7-1.469.469", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.466.466", "start_pos": 466, "end_pos": 466, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2011-04-08", "authors": "Bu Qingyun, Zhu Ling, Dennis Michael D, Yu Lu, Lu Sheen X, Person Maria D, Tobin Elaine M, Browning Karen S, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QPPQFQNQATSYPSSSRVSS", "down_seq": "KESEDHGNHTTG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation by CK2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK2", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ], "site_lbl": "Ser466" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GZM7-1.464.464", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GZM7-1.465.465", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GZM7-1.469.469", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.469.469", "start_pos": 469, "end_pos": 469, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation by CK2 enhances the rapid light-induced degradation of phytochrome interacting factor 1 in Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2011-04-08", "authors": "Bu Qingyun, Zhu Ling, Dennis Michael D, Yu Lu, Lu Sheen X, Person Maria D, Tobin Elaine M, Browning Karen S, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QFQNQATSYPSSSRVSSSKE", "down_seq": "EDHGNHTTG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation by CK2.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK2", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" }, { "database": "PubMed", "id": "21330376", "url": "https://glygen.org/publication/PubMed/21330376" } ], "site_lbl": "Ser469" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8GZM7-1.464.464", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8GZM7-1.465.465", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GZM7-1.466.466", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "RKSITTMGEDDDLMELLWQN", "down_seq": "QVVVQNQRLHTKKPSSSPPK", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of interaction with PHYB (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8GZM7-1.1.50", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GZM7-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GZM7-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GZM7-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8GZM7-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.85.95", "start_pos": 85, "end_pos": 95, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "FIQEDEMTSWL", "start_aa": "F", "up_seq": "PPKLLPSMDPQQQPSSDQNL", "down_seq": "HYPLRDDDFCSDLLFSAAPT", "mutagenesis": [ { "sequence_org": "FIQEDEMTSWL", "sequence_mut": "", "comment": "Reduced interaction with PHYA (Pfr form).", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "upstream", "id": "Q8GZM7-1.95.95", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes.", "journal": "The Plant cell", "date": "2008-06", "authors": "Shen Hui, Zhu Ling, Castillon Alicia, Majee Manoj, Downie Bruce, Huq Enamul", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "reference": [ { "type": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "crossref": [ { "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "QQQPSSDQNLFIQEDEMTSW", "down_seq": "HYPLRDDDFCSDLLFSAAPT", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Reduced interaction with PHYA (Pfr form). Reduced interaction with PHYA (Pfr form); when associated with A-123; A-153; or A-160. Loss of interaction with PHYA (Pfr form); when associated with A-144.", "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" }, { "database": "PubMed", "id": "18539749", "url": "https://glygen.org/publication/PubMed/18539749" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "downstream", "id": "Q8GZM7-1.85.95", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GZM7-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q8GZM7-1", "length": 478, "uniprot_id": "PIF1_ARATH", "protein_name": "Transcription factor PIF1", "refseq_ac": "NP_001189559", "refseq_name": "phytochrome interacting factor 3-like 5", "gene_name": "PIF1; PIL5", "gene_names_uniprotkb": "PIF1; PIL5; BHLH15; EN101; PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2", "gene_names_refseq": "PHY-INTERACTING FACTOR 1; PIF1; PIL5; T2G17.2; T2G17_2; phytochrome interacting factor 3-like 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZM7", "url": "https://www.uniprot.org/uniprotkb/Q8GZM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WQNGQVVVQNQRLHTKKPSS", "down_seq": "PPKLLPSMDPQQQPSSDQNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GZM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZM7" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "183", "end_pos": "183" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "118", "end_pos": "160" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "1", "end_pos": "50" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "85", "end_pos": "95" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8GZM7-1.1.50", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "downstream", "id": "Q8GZM7-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q8GZM7-1.47.47", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VY74-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "Q8VY74-1", "length": 333, "uniprot_id": "U1135_ARATH", "protein_name": "U11/U12 small nuclear ribonucleoprotein 35 kDa protein", "refseq_ac": "NP_850395", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SNRNP35", "gene_names_uniprotkb": "SNRNP35; T1O24.11", "gene_names_refseq": "T1O24.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VY74", "url": "https://www.uniprot.org/uniprotkb/Q8VY74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8VY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VY74" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8VY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VY74", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKLGIQLPPEGRYMSRTQIP", "down_seq": "PPRRKGSVSDREEEYYREKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VY74" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser208" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VY74-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "Q8VY74-1", "length": 333, "uniprot_id": "U1135_ARATH", "protein_name": "U11/U12 small nuclear ribonucleoprotein 35 kDa protein", "refseq_ac": "NP_850395", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SNRNP35", "gene_names_uniprotkb": "SNRNP35; T1O24.11", "gene_names_refseq": "T1O24.11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VY74", "url": "https://www.uniprot.org/uniprotkb/Q8VY74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8VY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VY74" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8VY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VY74", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPRRKGSVSDREEEYYREKS", "down_seq": "VEREEEFKERSSLRSYHSHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VY74" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "229", "end_pos": "229" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82244-1.103.103", "start_pos": 103, "end_pos": 103, "uniprot_canonical_ac": "O82244-1", "length": 438, "uniprot_id": "ALG3_ARATH", "protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase", "refseq_ac": "NP_001031556", "refseq_name": "asparagine-linked glycosylation 3", "gene_name": "ALG3", "gene_names_uniprotkb": "ALG3; AtALG3; F17A22.15", "gene_names_refseq": "ALG3; Arabidopsis thaliana asparagine-linked glycosylation 3; AtALG3; F17A22.15; asparagine-linked glycosylation 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82244", "url": "https://www.uniprot.org/uniprotkb/O82244" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82244", "url": "https://www.uniprot.org/uniprotkb/O82244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GDTGPLVYPAGFLYVYSAVQ", "down_seq": "LTGGEVYPAQILFGVLYIVN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "O82244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "397", "end_pos": "397" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82244-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "O82244-1", "length": 438, "uniprot_id": "ALG3_ARATH", "protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase", "refseq_ac": "NP_001031556", "refseq_name": "asparagine-linked glycosylation 3", "gene_name": "ALG3", "gene_names_uniprotkb": "ALG3; AtALG3; F17A22.15", "gene_names_refseq": "ALG3; Arabidopsis thaliana asparagine-linked glycosylation 3; AtALG3; F17A22.15; asparagine-linked glycosylation 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82244", "url": "https://www.uniprot.org/uniprotkb/O82244" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82244", "url": "https://www.uniprot.org/uniprotkb/O82244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GASSPASLRASRSRRLGKET", "down_seq": "RSDLFKKPAVPFAFALILAD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn23", "evidence": [ { "id": "O82244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "397", "end_pos": "397" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82244-1.397.397", "start_pos": 397, "end_pos": 397, "uniprot_canonical_ac": "O82244-1", "length": 438, "uniprot_id": "ALG3_ARATH", "protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase", "refseq_ac": "NP_001031556", "refseq_name": "asparagine-linked glycosylation 3", "gene_name": "ALG3", "gene_names_uniprotkb": "ALG3; AtALG3; F17A22.15", "gene_names_refseq": "ALG3; Arabidopsis thaliana asparagine-linked glycosylation 3; AtALG3; F17A22.15; asparagine-linked glycosylation 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82244", "url": "https://www.uniprot.org/uniprotkb/O82244" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TWLRLIMFLGIELCWNVYPS", "down_seq": "PSSSGLLLCLHLIILVGLWL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr397", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "397", "end_pos": "397" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C5U0-1.1008.1008", "start_pos": 1008, "end_pos": 1008, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutations at CRE1 impair cytokinin-induced repression of phosphate starvation responses in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-11", "authors": "Franco-Zorrilla Jos\u00e9 M, Martin Ana C, Solano Roberto, Rubio Vicente, Leyva Antonio, Paz-Ares Javier", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HTFDACFMDIQMPQMDGFEA", "down_seq": "RQIRMMEKETKEKTNLEWHL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "In cre1-4; slightly reduced sensitivity to cytokinin, and impaired cytokinin repression of several Pi starvation-responses.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9C5U0-1.996.996", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.1032.1032", "start_pos": 1032, "end_pos": 1032, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutations at CRE1 impair cytokinin-induced repression of phosphate starvation responses in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-11", "authors": "Franco-Zorrilla Jos\u00e9 M, Martin Ana C, Solano Roberto, Rubio Vicente, Leyva Antonio, Paz-Ares Javier", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "RMMEKETKEKTNLEWHLPIL", "down_seq": "MTADVIHATYEECLKSGMDG", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In cre1-9; impaired cytokinin repression of several Pi starvation-responses.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "ETFAEYTARTAFERPLLSGV", "down_seq": "YAEKVVNFEREMFERQHNWV", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "L", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9C5U0-1.227.227", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.227.227", "start_pos": 227, "end_pos": 227, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "FAEYTARTAFERPLLSGVAY", "down_seq": "EKVVNFEREMFERQHNWVIK", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "L", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9C5U0-1.225.225", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EPSPVRDEYAPVIFSQDSVS", "down_seq": "LESLDMMSGEEDRENILRAR", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "E", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q9C5U0-1.279.279", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9C5U0-1.285.285", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "DEYAPVIFSQDSVSYLESLD", "down_seq": "MSGEEDRENILRARETGKAV", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "A", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9C5U0-1.273.273", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C5U0-1.285.285", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.285.285", "start_pos": 285, "end_pos": 285, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "IFSQDSVSYLESLDMMSGEE", "down_seq": "RENILRARETGKAVLTSPFR", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] }, { "sequence_org": "D", "sequence_mut": "E", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] }, { "sequence_org": "D", "sequence_mut": "R", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9C5U0-1.273.273", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9C5U0-1.279.279", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9C5U0-1.301.301", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9C5U0-1.303.303", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9C5U0-1.304.304", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root.", "journal": "Genes & development", "date": "2000-12-01", "authors": "M\u00e4h\u00f6nen A P, Bonke M, Kauppinen L, Riikonen M, Benfey P N, Helariutta Y", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "11114883", "url": "https://glygen.org/publication/PubMed/11114883" } ] }, { "title": "Interallelic complementation at the Arabidopsis CRE1 locus uncovers independent pathways for the proliferation of vascular initials and canonical cytokinin signalling.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-04", "authors": "de Le\u00f3n Berenice Garc\u00eda-Ponce, Zorrilla Jose Manuel Franco, Rubio Vicente, Dahiya Preeti, Paz-Ares Javier, Leyva Antonio", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "15053761", "url": "https://glygen.org/publication/PubMed/15053761" } ] }, { "title": "Identification of amino acid substitutions that render the Arabidopsis cytokinin receptor histidine kinase AHK4 constitutively active.", "journal": "Plant & cell physiology", "date": "2007-12", "authors": "Miwa Kumiko, Ishikawa Kuniko, Terada Kazunori, Yamada Hisami, Suzuki Tomomi, Yamashino Takafumi, Mizuno Takeshi", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] }, { "title": "The Arabidopsis AHK4 histidine kinase is a cytokinin-binding receptor that transduces cytokinin signals across the membrane.", "journal": "Plant & cell physiology", "date": "2001-09", "authors": "Yamada H, Suzuki T, Terada K, Takei K, Ishikawa K, Miwa K, Yamashino T, Mizuno T", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "11577198", "url": "https://glygen.org/publication/PubMed/11577198" } ] }, { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] }, { "title": "Cytokinins regulate a bidirectional phosphorelay network in Arabidopsis.", "journal": "Current biology : CB", "date": "2006-06-06", "authors": "M\u00e4h\u00f6nen Ari Pekka, Higuchi Masayuki, T\u00f6rm\u00e4kangas Kirsi, Miyawaki Kaori, Pischke Melissa S, Sussman Michael R, Helariutta Yk\u00e4, Kakimoto Tatsuo", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11114883", "url": "https://glygen.org/publication/PubMed/11114883", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15053761", "url": "https://glygen.org/publication/PubMed/15053761", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11577198", "url": "https://glygen.org/publication/PubMed/11577198", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGEEDRENILRARETGKAVL", "down_seq": "SPFRLLETHHLGVVLTFPVY", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "In wol-1; locked in the phosphoprotein phosphatase active form, retardation of the primary root growth with reduced cell number and exclusive xylem differentiation within the vascular tissue associated with abnormal vascular asymmetric cell divisions, impaired metaxylem and phloem differentiation, and reduced cytokinin-binding ability leading to impaired kinase activity and cytokinin-mediated activation.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "11114883", "url": "https://glygen.org/publication/PubMed/11114883" }, { "database": "PubMed", "id": "15053761", "url": "https://glygen.org/publication/PubMed/15053761" }, { "database": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" }, { "database": "PubMed", "id": "11577198", "url": "https://glygen.org/publication/PubMed/11577198" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" }, { "database": "PubMed", "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9C5U0-1.285.285", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C5U0-1.303.303", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C5U0-1.304.304", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C5U0-1.306.306", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C5U0-1.307.307", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9C5U0-1.317.317", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.303.303", "start_pos": 303, "end_pos": 303, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "EEDRENILRARETGKAVLTS", "down_seq": "FRLLETHHLGVVLTFPVYKS", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "V", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9C5U0-1.285.285", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C5U0-1.301.301", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C5U0-1.304.304", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C5U0-1.306.306", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C5U0-1.307.307", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9C5U0-1.317.317", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.304.304", "start_pos": 304, "end_pos": 304, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "EDRENILRARETGKAVLTSP", "down_seq": "RLLETHHLGVVLTFPVYKSS", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9C5U0-1.285.285", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C5U0-1.301.301", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C5U0-1.303.303", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C5U0-1.306.306", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C5U0-1.307.307", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9C5U0-1.317.317", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "RENILRARETGKAVLTSPFR", "down_seq": "LETHHLGVVLTFPVYKSSLP", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9C5U0-1.301.301", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C5U0-1.303.303", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C5U0-1.304.304", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C5U0-1.307.307", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9C5U0-1.317.317", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "ENILRARETGKAVLTSPFRL", "down_seq": "ETHHLGVVLTFPVYKSSLPE", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9C5U0-1.301.301", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9C5U0-1.303.303", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C5U0-1.304.304", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C5U0-1.306.306", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9C5U0-1.317.317", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.317.317", "start_pos": 317, "end_pos": 317, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KAVLTSPFRLLETHHLGVVL", "down_seq": "FPVYKSSLPENPTVEERIAA", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9C5U0-1.301.301", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9C5U0-1.303.303", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9C5U0-1.304.304", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9C5U0-1.306.306", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9C5U0-1.307.307", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4.", "journal": "Nature chemical biology", "date": "2011-10-02", "authors": "Hothorn Michael, Dabi Tsegaye, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "SSLPENPTVEERIAATAGYL", "down_seq": "GAFDVESLVENLLGQLAGNQ", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "L", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "21964459", "url": "https://glygen.org/publication/PubMed/21964459" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acid substitutions that render the Arabidopsis cytokinin receptor histidine kinase AHK4 constitutively active.", "journal": "Plant & cell physiology", "date": "2007-12", "authors": "Miwa Kumiko, Ishikawa Kuniko, Terada Kazunori, Yamada Hisami, Suzuki Tomomi, Yamashino Takafumi, Mizuno Takeshi", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "HQKAPIPLNVLTTVPLFFAI", "down_seq": "FLVGYILYGAAMHIVKVEDD", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "C", "comment": "Constitutively activated independently of cytokinin.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9C5U0-1.436.436", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9C5U0-1.447.447", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.436.436", "start_pos": 436, "end_pos": 436, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acid substitutions that render the Arabidopsis cytokinin receptor histidine kinase AHK4 constitutively active.", "journal": "Plant & cell physiology", "date": "2007-12", "authors": "Miwa Kumiko, Ishikawa Kuniko, Terada Kazunori, Yamada Hisami, Suzuki Tomomi, Yamashino Takafumi, Mizuno Takeshi", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "QKAPIPLNVLTTVPLFFAIG", "down_seq": "LVGYILYGAAMHIVKVEDDF", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "S", "comment": "Constitutively activated independently of cytokinin.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9C5U0-1.435.435", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9C5U0-1.447.447", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.447.447", "start_pos": 447, "end_pos": 447, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acid substitutions that render the Arabidopsis cytokinin receptor histidine kinase AHK4 constitutively active.", "journal": "Plant & cell physiology", "date": "2007-12", "authors": "Miwa Kumiko, Ishikawa Kuniko, Terada Kazunori, Yamada Hisami, Suzuki Tomomi, Yamashino Takafumi, Mizuno Takeshi", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "TVPLFFAIGFLVGYILYGAA", "down_seq": "HIVKVEDDFHEMQELKVRAE", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "T", "comment": "Constitutively activated independently of cytokinin.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9C5U0-1.435.435", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9C5U0-1.436.436", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9C5U0-1.459.459", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.459.459", "start_pos": 459, "end_pos": 459, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Cytokinin receptors are required for normal development of auxin-transporting vascular tissues in the hypocotyl but not in adventitious roots.", "journal": "Plant & cell physiology", "date": "2006-02", "authors": "Kuroha Takeshi, Ueguchi Chiharu, Sakakibara Hitoshi, Satoh Shinobu", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "16357038", "url": "https://glygen.org/publication/PubMed/16357038" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16357038", "url": "https://glygen.org/publication/PubMed/16357038", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "GYILYGAAMHIVKVEDDFHE", "down_seq": "QELKVRAEAADVAKSQFLAT", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "I", "comment": "In wol-3; retardation of the primary root growth, no production of lateral roots and enhanced formation of adventitious roots associated with impaired auxin basipetal transport.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "16357038", "url": "https://glygen.org/publication/PubMed/16357038" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9C5U0-1.447.447", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9C5U0-1.471.471", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.471.471", "start_pos": 471, "end_pos": 471, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acid substitutions that render the Arabidopsis cytokinin receptor histidine kinase AHK4 constitutively active.", "journal": "Plant & cell physiology", "date": "2007-12", "authors": "Miwa Kumiko, Ishikawa Kuniko, Terada Kazunori, Yamada Hisami, Suzuki Tomomi, Yamashino Takafumi, Mizuno Takeshi", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "KVEDDFHEMQELKVRAEAAD", "down_seq": "AKSQFLATVSHEIRTPMNGI", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Constitutively activated independently of cytokinin.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9C5U0-1.459.459", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9C5U0-1.482.482", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9C5U0-1.490.490", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.482.482", "start_pos": 482, "end_pos": 482, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of CRE1 as a cytokinin receptor from Arabidopsis.", "journal": "Nature", "date": "2001-02-22", "authors": "Inoue T, Higuchi M, Hashimoto Y, Seki M, Kobayashi M, Kato T, Tabata S, Shinozaki K, Kakimoto T", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017" } ] }, { "title": "Cytokinins regulate a bidirectional phosphorelay network in Arabidopsis.", "journal": "Current biology : CB", "date": "2006-06-06", "authors": "M\u00e4h\u00f6nen Ari Pekka, Higuchi Masayuki, T\u00f6rm\u00e4kangas Kirsi, Miyawaki Kaori, Pischke Melissa S, Sussman Michael R, Helariutta Yk\u00e4, Kakimoto Tatsuo", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "LKVRAEAADVAKSQFLATVS", "down_seq": "EIRTPMNGILGMLAMLLDTE", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "Q", "comment": "Reduced phosphoprotein phosphatase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017" }, { "database": "PubMed", "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "His", "comment": "Phosphohistidine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "site_lbl": "His482" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9C5U0-1.471.471", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9C5U0-1.490.490", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9C5U0-1.493.493", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9C5U0-1.494.494", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.490.490", "start_pos": 490, "end_pos": 490, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of CRE1 as a cytokinin receptor from Arabidopsis.", "journal": "Nature", "date": "2001-02-22", "authors": "Inoue T, Higuchi M, Hashimoto Y, Seki M, Kobayashi M, Kato T, Tabata S, Shinozaki K, Kakimoto T", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017" } ] }, { "title": "Characterization of the ARR15 and ARR16 response regulators with special reference to the cytokinin signaling pathway mediated by the AHK4 histidine kinase in roots of Arabidopsis thaliana.", "journal": "Plant & cell physiology", "date": "2002-09", "authors": "Kiba Takatoshi, Yamada Hisami, Mizuno Takeshi", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "12354925", "url": "https://glygen.org/publication/PubMed/12354925" } ] }, { "title": "A novel regulatory pathway of sulfate uptake in Arabidopsis roots: implication of CRE1/WOL/AHK4-mediated cytokinin-dependent regulation.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-06", "authors": "Maruyama-Nakashita Akiko, Nakamura Yumiko, Yamaya Tomoyuki, Takahashi Hideki", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "15144379", "url": "https://glygen.org/publication/PubMed/15144379" } ] }, { "title": "Cytokinin receptors are required for normal development of auxin-transporting vascular tissues in the hypocotyl but not in adventitious roots.", "journal": "Plant & cell physiology", "date": "2006-02", "authors": "Kuroha Takeshi, Ueguchi Chiharu, Sakakibara Hitoshi, Satoh Shinobu", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "16357038", "url": "https://glygen.org/publication/PubMed/16357038" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12354925", "url": "https://glygen.org/publication/PubMed/12354925", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15144379", "url": "https://glygen.org/publication/PubMed/15144379", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16357038", "url": "https://glygen.org/publication/PubMed/16357038", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "DVAKSQFLATVSHEIRTPMN", "down_seq": "ILGMLAMLLDTELSSTQRDY", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In cre1-1; impaired histidine-kinase receptor activity and reduced responses to cytokinins, including rapid cell proliferation and shoot formation in tissue culture, repression of sulfate uptake, retardation of the primary root growth, no production of lateral roots and enhanced formation of adventitious roots associated with impaired auxin basipetal transport, as well as reduced cell number within the vascular tissues in roots.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017" }, { "database": "PubMed", "id": "12354925", "url": "https://glygen.org/publication/PubMed/12354925" }, { "database": "PubMed", "id": "15144379", "url": "https://glygen.org/publication/PubMed/15144379" }, { "database": "PubMed", "id": "16357038", "url": "https://glygen.org/publication/PubMed/16357038" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9C5U0-1.471.471", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9C5U0-1.482.482", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C5U0-1.493.493", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C5U0-1.494.494", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.493.493", "start_pos": 493, "end_pos": 493, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutations at CRE1 impair cytokinin-induced repression of phosphate starvation responses in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-11", "authors": "Franco-Zorrilla Jos\u00e9 M, Martin Ana C, Solano Roberto, Rubio Vicente, Leyva Antonio, Paz-Ares Javier", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "KSQFLATVSHEIRTPMNGIL", "down_seq": "MLAMLLDTELSSTQRDYAQT", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "In cre1-6; reduced sensitivity to cytokinin.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "12410813", "url": "https://glygen.org/publication/PubMed/12410813" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9C5U0-1.482.482", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C5U0-1.490.490", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C5U0-1.494.494", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.494.494", "start_pos": 494, "end_pos": 494, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of amino acid substitutions that render the Arabidopsis cytokinin receptor histidine kinase AHK4 constitutively active.", "journal": "Plant & cell physiology", "date": "2007-12", "authors": "Miwa Kumiko, Ishikawa Kuniko, Terada Kazunori, Yamada Hisami, Suzuki Tomomi, Yamashino Takafumi, Mizuno Takeshi", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "SQFLATVSHEIRTPMNGILG", "down_seq": "LAMLLDTELSSTQRDYAQTA", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "L", "comment": "Constitutively activated independently of cytokinin.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "17956858", "url": "https://glygen.org/publication/PubMed/17956858" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9C5U0-1.482.482", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9C5U0-1.490.490", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C5U0-1.493.493", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.529.529", "start_pos": 529, "end_pos": 529, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Interallelic complementation at the Arabidopsis CRE1 locus uncovers independent pathways for the proliferation of vascular initials and canonical cytokinin signalling.", "journal": "The Plant journal : for cell and molecular biology", "date": "2004-04", "authors": "de Le\u00f3n Berenice Garc\u00eda-Ponce, Zorrilla Jose Manuel Franco, Rubio Vicente, Dahiya Preeti, Paz-Ares Javier, Leyva Antonio", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "15053761", "url": "https://glygen.org/publication/PubMed/15053761" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15053761", "url": "https://glygen.org/publication/PubMed/15053761", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "DYAQTAQVCGKALIALINEV", "down_seq": "DRAKIEAGKLELESVPFDIR", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "F", "comment": "In wol-2/raw1; impaired metaxylem and phloem differentiation, and reduced sensitivity to cytokinins. Retardation of the primary root growth with reduced cell number and exclusive xylem differentiation within the vascular tissue associated with abnormal vascular asymmetric cell divisions, and impaired cytokinin-binding ability.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "15053761", "url": "https://glygen.org/publication/PubMed/15053761" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.708.708", "start_pos": 708, "end_pos": 708, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Cytokinins regulate a bidirectional phosphorelay network in Arabidopsis.", "journal": "Current biology : CB", "date": "2006-06-06", "authors": "M\u00e4h\u00f6nen Ari Pekka, Higuchi Masayuki, T\u00f6rm\u00e4kangas Kirsi, Miyawaki Kaori, Pischke Melissa S, Sussman Michael R, Helariutta Yk\u00e4, Kakimoto Tatsuo", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "SIEDTGIGIPLVAQGRVFMP", "down_seq": "MQADSSTSRNYGGTGIGLSI", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "L", "comment": "No histidine kinase activity, but normal phosphoprotein phosphatase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C5U0-1.996.996", "start_pos": 996, "end_pos": 996, "uniprot_canonical_ac": "Q9C5U0-1", "length": 1080, "uniprot_id": "AHK4_ARATH", "protein_name": "Histidine kinase 4", "refseq_ac": "NP_001324428", "refseq_name": "CHASE domain containing histidine kinase protein", "gene_name": "AHK4; WOL", "gene_names_uniprotkb": "AHK4; WOL; AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; RAW1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "gene_names_refseq": "AHK4; ARABIDOPSIS HISTIDINE KINASE 4; ATCRE1; CRE1; CYTOKININ RESPONSE 1; T23K3.2; T23K3_2; WOL1; WOL; WOODEN LEG 1; WOODEN LEG", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of CRE1 as a cytokinin receptor from Arabidopsis.", "journal": "Nature", "date": "2001-02-22", "authors": "Inoue T, Higuchi M, Hashimoto Y, Seki M, Kobayashi M, Kato T, Tabata S, Shinozaki K, Kakimoto T", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017" } ] }, { "title": "Cytokinins regulate a bidirectional phosphorelay network in Arabidopsis.", "journal": "Current biology : CB", "date": "2006-06-06", "authors": "M\u00e4h\u00f6nen Ari Pekka, Higuchi Masayuki, T\u00f6rm\u00e4kangas Kirsi, Miyawaki Kaori, Pischke Melissa S, Sussman Michael R, Helariutta Yk\u00e4, Kakimoto Tatsuo", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" } ], "reference": [ { "type": "PubMed", "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566" } ] } ], "crossref": [ { "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "SGQVALGLLQIPHTFDACFM", "down_seq": "IQMPQMDGFEATRQIRMMEK", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Cytokinin-mediated autophosphorylation but impaired phosphotransfer to an HPt, abolished phosphoprotein phosphatase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9C5U0", "url": "https://www.uniprot.org/uniprotkb/Q9C5U0" }, { "database": "PubMed", "id": "11234017", "url": "https://glygen.org/publication/PubMed/11234017" }, { "database": "PubMed", "id": "16753566", "url": "https://glygen.org/publication/PubMed/16753566" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1008", "end_pos": "1008" }, { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "471", "end_pos": "471" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "493", "end_pos": "493" }, { "start_pos": "494", "end_pos": "494" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "708", "end_pos": "708" }, { "start_pos": "996", "end_pos": "996" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "482", "end_pos": "482" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q9C5U0-1.1008.1008", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJG9-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "Q9SJG9-1", "length": 606, "uniprot_id": "MPK20_ARATH", "protein_name": "Mitogen-activated protein kinase 20", "refseq_ac": "NP_565989", "refseq_name": "MAP kinase 20", "gene_name": "MPK20", "gene_names_uniprotkb": "MPK20; ATMPK20; F7D19.12; F7D19_12; MAP kinase 20", "gene_names_refseq": "ATMPK20; F7D19.12; F7D19_12; MAP kinase 20; MPK20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SJG9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJG9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SJG9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJG9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ICDFGLARVAFNDTPTTIFW", "down_seq": "DYVATRWYRAPELCGSFYSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" }, { "database": "iPTMnet", "id": "Q9SJG9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJG9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr187" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "192", "end_pos": "192" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9SJG9-1.189.189", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9SJG9-1.192.192", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJG9-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "Q9SJG9-1", "length": 606, "uniprot_id": "MPK20_ARATH", "protein_name": "Mitogen-activated protein kinase 20", "refseq_ac": "NP_565989", "refseq_name": "MAP kinase 20", "gene_name": "MPK20", "gene_names_uniprotkb": "MPK20; ATMPK20; F7D19.12; F7D19_12; MAP kinase 20", "gene_names_refseq": "ATMPK20; F7D19.12; F7D19_12; MAP kinase 20; MPK20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9SJG9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJG9" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9SJG9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJG9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SJG9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJG9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DFGLARVAFNDTPTTIFWTD", "down_seq": "VATRWYRAPELCGSFYSKYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" }, { "database": "iPTMnet", "id": "Q9SJG9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJG9" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr189" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "192", "end_pos": "192" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9SJG9-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9SJG9-1.192.192", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJG9-1.192.192", "start_pos": 192, "end_pos": 192, "uniprot_canonical_ac": "Q9SJG9-1", "length": 606, "uniprot_id": "MPK20_ARATH", "protein_name": "Mitogen-activated protein kinase 20", "refseq_ac": "NP_565989", "refseq_name": "MAP kinase 20", "gene_name": "MPK20", "gene_names_uniprotkb": "MPK20; ATMPK20; F7D19.12; F7D19_12; MAP kinase 20", "gene_names_refseq": "ATMPK20; F7D19.12; F7D19_12; MAP kinase 20; MPK20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LARVAFNDTPTTIFWTDYVA", "down_seq": "RWYRAPELCGSFYSKYTPAI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9SJG9", "url": "https://www.uniprot.org/uniprotkb/Q9SJG9" } ], "site_lbl": "Thr192" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "192", "end_pos": "192" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9SJG9-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9SJG9-1.189.189", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9SJN0-1.391.391", "start_pos": 391, "end_pos": 391, "uniprot_canonical_ac": "Q9SJN0-1", "length": 442, "uniprot_id": "ABI5_ARATH", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "refseq_ac": "NP_001324735", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "ABI5", "gene_names_uniprotkb": "ABI5; ABA INSENSITIVE 5; AtABI5; BZIP39; DPBF1; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1; NEM1", "gene_names_refseq": "ABA INSENSITIVE 5; ABI5; AtABI5; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sumoylation of ABI5 by the Arabidopsis SUMO E3 ligase SIZ1 negatively regulates abscisic acid signaling.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-03-31", "authors": "Miura Kenji, Lee Jiyoung, Jin Jing Bo, Yoo Chan Yul, Miura Tomoko, Hasegawa Paul M", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "19276109", "url": "https://glygen.org/publication/PubMed/19276109" } ] } ], "crossref": [ { "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19276109", "url": "https://glygen.org/publication/PubMed/19276109", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "RSRARKQAYTVELEAELNQL", "down_seq": "EENAQLKHALAELERKRKQQ", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of sumoylation.", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" }, { "database": "PubMed", "id": "19276109", "url": "https://glygen.org/publication/PubMed/19276109" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "391", "end_pos": "391" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJN0-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "Q9SJN0-1", "length": 442, "uniprot_id": "ABI5_ARATH", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "refseq_ac": "NP_001324735", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "ABI5", "gene_names_uniprotkb": "ABI5; ABA INSENSITIVE 5; AtABI5; BZIP39; DPBF1; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1; NEM1", "gene_names_refseq": "ABA INSENSITIVE 5; ABI5; AtABI5; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-11", "authors": "Lopez-Molina Luis, Mongrand S\u00e9bastien, McLachlin Derek T, Chait Brian T, Chua Nam-Hai", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" }, { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis.", "journal": "Journal of experimental botany", "date": "2013-01", "authors": "Wang Yanping, Li Lin, Ye Tiantian, Lu Yuming, Chen Xi, Wu Yan", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919" } ] } ], "crossref": [ { "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NEDANNKRGIANESSLPRQG", "down_seq": "LTLPAPLCRKTVDEVWSEIH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" }, { "database": "PubMed", "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810" }, { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919" } ], "site_lbl": "Ser145" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "391", "end_pos": "391" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJN0-1.201.201", "start_pos": 201, "end_pos": 201, "uniprot_canonical_ac": "Q9SJN0-1", "length": 442, "uniprot_id": "ABI5_ARATH", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "refseq_ac": "NP_001324735", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "ABI5", "gene_names_uniprotkb": "ABI5; ABA INSENSITIVE 5; AtABI5; BZIP39; DPBF1; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1; NEM1", "gene_names_refseq": "ABA INSENSITIVE 5; ABI5; AtABI5; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-11", "authors": "Lopez-Molina Luis, Mongrand S\u00e9bastien, McLachlin Derek T, Chait Brian T, Chua Nam-Hai", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" }, { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810" } ] }, { "title": "The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis.", "journal": "Journal of experimental botany", "date": "2013-01", "authors": "Wang Yanping, Li Lin, Ye Tiantian, Lu Yuming, Chen Xi, Wu Yan", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919" } ] } ], "crossref": [ { "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSSNGQNNAQNGGETAARQP", "down_seq": "FGEMTLEDFLVKAGVVREHP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" }, { "database": "PubMed", "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810" }, { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" }, { "database": "PubMed", "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919" } ], "site_lbl": "Thr201" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "391", "end_pos": "391" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJN0-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "Q9SJN0-1", "length": 442, "uniprot_id": "ABI5_ARATH", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "refseq_ac": "NP_001324735", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "ABI5", "gene_names_uniprotkb": "ABI5; ABA INSENSITIVE 5; AtABI5; BZIP39; DPBF1; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1; NEM1", "gene_names_refseq": "ABA INSENSITIVE 5; ABI5; AtABI5; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis.", "journal": "Journal of experimental botany", "date": "2013-01", "authors": "Wang Yanping, Li Lin, Ye Tiantian, Lu Yuming, Chen Xi, Wu Yan", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919" } ] } ], "crossref": [ { "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARHNGGGGGENHPFTSLGRQ", "down_seq": "SIYSLTLDEFQHALCENGKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" }, { "database": "PubMed", "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919" } ], "site_lbl": "Ser41" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "391", "end_pos": "391" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9SJN0-1.42.42", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJN0-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q9SJN0-1", "length": 442, "uniprot_id": "ABI5_ARATH", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "refseq_ac": "NP_001324735", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "ABI5", "gene_names_uniprotkb": "ABI5; ABA INSENSITIVE 5; AtABI5; BZIP39; DPBF1; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1; NEM1", "gene_names_refseq": "ABA INSENSITIVE 5; ABI5; AtABI5; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-11", "authors": "Lopez-Molina Luis, Mongrand S\u00e9bastien, McLachlin Derek T, Chait Brian T, Chua Nam-Hai", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" }, { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810" } ] }, { "title": "The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis.", "journal": "Journal of experimental botany", "date": "2013-01", "authors": "Wang Yanping, Li Lin, Ye Tiantian, Lu Yuming, Chen Xi, Wu Yan", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919" } ] } ], "crossref": [ { "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHNGGGGGENHPFTSLGRQS", "down_seq": "IYSLTLDEFQHALCENGKNF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" }, { "database": "PubMed", "id": "12410810", "url": "https://glygen.org/publication/PubMed/12410810" }, { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" }, { "database": "PubMed", "id": "23307919", "url": "https://glygen.org/publication/PubMed/23307919" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "391", "end_pos": "391" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9SJN0-1.41.41", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJN0-1.433.433", "start_pos": 433, "end_pos": 433, "uniprot_canonical_ac": "Q9SJN0-1", "length": 442, "uniprot_id": "ABI5_ARATH", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "refseq_ac": "NP_001324735", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "ABI5", "gene_names_uniprotkb": "ABI5; ABA INSENSITIVE 5; AtABI5; BZIP39; DPBF1; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1; NEM1", "gene_names_refseq": "ABA INSENSITIVE 5; ABI5; AtABI5; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Raf-Like Kinase Raf10 Is a Regulatory Component of Core ABA Signaling.", "journal": "Molecules and cells", "date": "2019-09-30", "authors": "Nguyen Quy Thi Cam, Lee Sun-Ji, Choi Seo-Wha, Na Yeon-Ju, Song Mi-Ran, Hoang Quyen Thi Ngoc, Sim Seo Young, Kim Min-Sik, Kim Jeong-Il, Soh Moon-Soo, Kim Soo Young", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" } ], "reference": [ { "type": "PubMed", "id": "31480825", "url": "https://glygen.org/publication/PubMed/31480825" } ] } ], "crossref": [ { "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "31480825", "url": "https://glygen.org/publication/PubMed/31480825", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FESLKSRAQPKLPKSNGRLR", "down_seq": "LMRNPSCPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SJN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SJN0" }, { "database": "PubMed", "id": "31480825", "url": "https://glygen.org/publication/PubMed/31480825" } ], "site_lbl": "Thr433" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "391", "end_pos": "391" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SJN0-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q9SJN0-1", "length": 442, "uniprot_id": "ABI5_ARATH", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "refseq_ac": "NP_001324735", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "ABI5", "gene_names_uniprotkb": "ABI5; ABA INSENSITIVE 5; AtABI5; BZIP39; DPBF1; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1; NEM1", "gene_names_refseq": "ABA INSENSITIVE 5; ABI5; AtABI5; F2H17.12; F2H17_12; GIA1; GROWTH-INSENSITIVITY TO ABA 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YSLTLDEFQHALCENGKNFG", "down_seq": "MNMDEFLVSIWNAEENNNNQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "391", "end_pos": "391" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P25071-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "P25071-1", "length": 324, "uniprot_id": "CML12_ARATH", "protein_name": "Calmodulin-like protein 12", "refseq_ac": "NP_001189723", "refseq_name": "Calcium-binding EF hand family protein", "gene_name": "CML12; TCH3", "gene_names_uniprotkb": "CML12; TCH3; ATCAL4; CAL4; CALMODULIN-RELATED PROTEIN; CML12; T3K9.13; T3K9_13; TCH3; TOUCH 3; calmodulin-like 12", "gene_names_refseq": "ARABIDOPSIS THALIANA CALMODULIN LIKE 4; ATCAL4; CALMODULIN-RELATED PROTEIN; CML12; T3K9.13; T3K9_13; TCH3; TOUCH 3; calmodulin-like 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25071", "url": "https://www.uniprot.org/uniprotkb/P25071" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LFDKNGDGSITKKELRTVMF", "down_seq": "LGKNRTKADLQDMMNEVDLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser128" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25071-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "P25071-1", "length": 324, "uniprot_id": "CML12_ARATH", "protein_name": "Calmodulin-like protein 12", "refseq_ac": "NP_001189723", "refseq_name": "Calcium-binding EF hand family protein", "gene_name": "CML12; TCH3", "gene_names_uniprotkb": "CML12; TCH3; ATCAL4; CAL4; CALMODULIN-RELATED PROTEIN; CML12; T3K9.13; T3K9_13; TCH3; TOUCH 3; calmodulin-like 12", "gene_names_refseq": "ARABIDOPSIS THALIANA CALMODULIN LIKE 4; ATCAL4; CALMODULIN-RELATED PROTEIN; CML12; T3K9.13; T3K9_13; TCH3; TOUCH 3; calmodulin-like 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25071", "url": "https://www.uniprot.org/uniprotkb/P25071" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MADKLTDDQITEYRE", "down_seq": "FRLFDKNGDGSITKKELGTM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "P25071-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25071-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "P25071-1", "length": 324, "uniprot_id": "CML12_ARATH", "protein_name": "Calmodulin-like protein 12", "refseq_ac": "NP_001189723", "refseq_name": "Calcium-binding EF hand family protein", "gene_name": "CML12; TCH3", "gene_names_uniprotkb": "CML12; TCH3; ATCAL4; CAL4; CALMODULIN-RELATED PROTEIN; CML12; T3K9.13; T3K9_13; TCH3; TOUCH 3; calmodulin-like 12", "gene_names_refseq": "ARABIDOPSIS THALIANA CALMODULIN LIKE 4; ATCAL4; CALMODULIN-RELATED PROTEIN; CML12; T3K9.13; T3K9_13; TCH3; TOUCH 3; calmodulin-like 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25071", "url": "https://www.uniprot.org/uniprotkb/P25071" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QITEYRESFRLFDKNGDGSI", "down_seq": "KKELGTMMRSIGEKPTKADL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25071", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25071" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P25071-1.16.16", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25696-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "P25696-1", "length": 444, "uniprot_id": "ENO2_ARATH", "protein_name": "Bifunctional enolase 2/transcriptional activator", "refseq_ac": "NP_181192", "refseq_name": "Enolase", "gene_name": "ENO2; LOS2", "gene_names_uniprotkb": "ENO2; LOS2; ENO2; ENOC; ENOLASE 2; F1O11.16; F1O11_16; LOS2; cytosolic enolase", "gene_names_refseq": "ENO2; ENOC; ENOLASE 2; F1O11.16; F1O11_16; LOS2; LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2; cytosolic enolase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25696", "url": "https://www.uniprot.org/uniprotkb/P25696" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "LOS2, a genetic locus required for cold-responsive gene transcription encodes a bi-functional enolase.", "journal": "The EMBO journal", "date": "2002-06-03", "authors": "Lee Hojoung, Guo Yan, Ohta Masaru, Xiong Liming, Stevenson Becky, Zhu Jian-Kang", "evidence": [ { "database": "UniProtKB", "id": "P25696", "url": "https://www.uniprot.org/uniprotkb/P25696" } ], "reference": [ { "type": "PubMed", "id": "12032082", "url": "https://glygen.org/publication/PubMed/12032082" } ] } ], "crossref": [ { "id": "P25696", "url": "https://www.uniprot.org/uniprotkb/P25696", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12032082", "url": "https://glygen.org/publication/PubMed/12032082", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "DDWEHYAKMTTECGTEVQIV", "down_seq": "DDLLVTNPKRVAKAIAEKSC", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "Impairs cold-responsive gene transcription.", "evidence": [ { "database": "UniProtKB", "id": "P25696", "url": "https://www.uniprot.org/uniprotkb/P25696" }, { "database": "PubMed", "id": "12032082", "url": "https://glygen.org/publication/PubMed/12032082" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "275", "end_pos": "275" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25696-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "P25696-1", "length": 444, "uniprot_id": "ENO2_ARATH", "protein_name": "Bifunctional enolase 2/transcriptional activator", "refseq_ac": "NP_181192", "refseq_name": "Enolase", "gene_name": "ENO2; LOS2", "gene_names_uniprotkb": "ENO2; LOS2; ENO2; ENOC; ENOLASE 2; F1O11.16; F1O11_16; LOS2; cytosolic enolase", "gene_names_refseq": "ENO2; ENOC; ENOLASE 2; F1O11.16; F1O11_16; LOS2; LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2; cytosolic enolase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25696", "url": "https://www.uniprot.org/uniprotkb/P25696" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P25696", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25696" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P25696", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25696" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P25696", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25696", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EFYSEDKTYDLNFKEENNNG", "down_seq": "QKISGDALKDLYKSFVAEYP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25696", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25696" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser275" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "275", "end_pos": "275" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25696-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "P25696-1", "length": 444, "uniprot_id": "ENO2_ARATH", "protein_name": "Bifunctional enolase 2/transcriptional activator", "refseq_ac": "NP_181192", "refseq_name": "Enolase", "gene_name": "ENO2; LOS2", "gene_names_uniprotkb": "ENO2; LOS2; ENO2; ENOC; ENOLASE 2; F1O11.16; F1O11_16; LOS2; cytosolic enolase", "gene_names_refseq": "ENO2; ENOC; ENOLASE 2; F1O11.16; F1O11_16; LOS2; LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2; cytosolic enolase", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25696", "url": "https://www.uniprot.org/uniprotkb/P25696" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P25696", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25696" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P25696", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25696" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P25696", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25696", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVPSGASTGIYEALELRDGG", "down_seq": "DYLGKGVSKAVGNVNNIIGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25696", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25696" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "275", "end_pos": "275" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q683C9-1.164.164", "start_pos": 164, "end_pos": 164, "uniprot_canonical_ac": "Q683C9-1", "length": 282, "uniprot_id": "AUR2_ARATH", "protein_name": "Serine/threonine-protein kinase Aurora-2", "refseq_ac": "NP_180159", "refseq_name": "ataurora2", "gene_name": "AUR2", "gene_names_uniprotkb": "AUR2; AtAUR2; F17H15.9; F17H15_9; ataurora2", "gene_names_refseq": "AUR2; AtAUR2; F17H15.9; F17H15_9; ataurora2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q683C9", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q683C9", "url": "https://www.uniprot.org/uniprotkb/Q683C9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KPENLLIGAQGELKIADFGW", "down_seq": "VHTFNRRRTMCGTLDYLPPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q683C9", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ], "site_lbl": "Ser164" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "173", "end_pos": "173" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q683C9-1.173.173", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q683C9-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "Q683C9-1", "length": 282, "uniprot_id": "AUR2_ARATH", "protein_name": "Serine/threonine-protein kinase Aurora-2", "refseq_ac": "NP_180159", "refseq_name": "ataurora2", "gene_name": "AUR2", "gene_names_uniprotkb": "AUR2; AtAUR2; F17H15.9; F17H15_9; ataurora2", "gene_names_refseq": "AUR2; AtAUR2; F17H15.9; F17H15_9; ataurora2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q683C9", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q683C9", "url": "https://www.uniprot.org/uniprotkb/Q683C9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QGELKIADFGWSVHTFNRRR", "down_seq": "MCGTLDYLPPEMVESVEHDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q683C9", "url": "https://www.uniprot.org/uniprotkb/Q683C9" } ], "site_lbl": "Thr173" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "173", "end_pos": "173" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q683C9-1.164.164", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GSA7-1.736.736", "start_pos": 736, "end_pos": 736, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ALGAAPGTLTDPNPDFPSGS", "down_seq": "PSDLAYANGHKGIAGYLSEY", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr736", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GSA7-1.855.855", "start_pos": 855, "end_pos": 855, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "SR1, a calmodulin-binding transcription factor, modulates plant defense and ethylene-induced senescence by directly regulating NDR1 and EIN3.", "journal": "Plant physiology", "date": "2012-04", "authors": "Nie Haozhen, Zhao Chunzhao, Wu Guangheng, Wu Yingying, Chen Yongfang, Tang Dingzhong", "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "22345509", "url": "https://glygen.org/publication/PubMed/22345509" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22345509", "url": "https://glygen.org/publication/PubMed/22345509", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "MLAPKTHKSGRAHSDDSVQA", "down_seq": "AIRIQNKFRGYKGRKDYLIT", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "V", "comment": "Gain-of-function mutant.", "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" }, { "database": "PubMed", "id": "22345509", "url": "https://glygen.org/publication/PubMed/22345509" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GSA7-1.848.848", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELSHIVFVHYLEVKGSRVST", "down_seq": "FNRMQRTEDAARSPQETGDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser143" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "", "down_seq": "EARHRWLRPPEICEILQNYQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser20" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8GSA7-1.8.8", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" }, { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRTIPVTDSSIMVDKSKTIN", "down_seq": "PGVTNGLKNRKSIDSQTWEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser272" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.399.399", "start_pos": 399, "end_pos": 399, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TMKQHLLHGALGEEGLKKMD", "down_seq": "FNRWMSKELGDVGVIADANE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser399" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ADANESFTQSSSRTYWEEVE", "down_seq": "EDGSNGHNSRRDMDGYVMSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser435" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q8GSA7-1.454.454", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.454.454", "start_pos": 454, "end_pos": 454, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" }, { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESEDGSNGHNSRRDMDGYVM", "down_seq": "PSLSKEQLFSINDFSPSWAY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser454" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GSA7-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GSA7-1.456.456", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.456.456", "start_pos": 456, "end_pos": 456, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDGSNGHNSRRDMDGYVMSP", "down_seq": "LSKEQLFSINDFSPSWAYVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser456" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GSA7-1.454.454", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.586.586", "start_pos": 586, "end_pos": 586, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "STIDILEARFVKLLCSKSEN", "down_seq": "SPVSGNDSDLSQLSEKISLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr586" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8GSA7-1.587.587", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.587.587", "start_pos": 587, "end_pos": 587, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TIDILEARFVKLLCSKSENT", "down_seq": "PVSGNDSDLSQLSEKISLLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser587" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8GSA7-1.586.586", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.766.766", "start_pos": 766, "end_pos": 766, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HKGIAGYLSEYALRAHVSLL", "down_seq": "LNDKNAETVEMAPSPSSSSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser766" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q8GSA7-1.774.774", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8GSA7-1.780.780", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.774.774", "start_pos": 774, "end_pos": 774, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SEYALRAHVSLLSLNDKNAE", "down_seq": "VEMAPSPSSSSLTDSLTAVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr774" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8GSA7-1.766.766", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GSA7-1.780.780", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.780.780", "start_pos": 780, "end_pos": 780, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AHVSLLSLNDKNAETVEMAP", "down_seq": "PSSSSLTDSLTAVRNATQAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser780" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8GSA7-1.766.766", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GSA7-1.774.774", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.811.811", "start_pos": 811, "end_pos": 811, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAVRNATQAAARIHQVFRAQ", "down_seq": "FQKKQLKEFGDKKLGMSEER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "site_lbl": "Ser811" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GSA7-1.834.834", "start_pos": 834, "end_pos": 834, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKQLKEFGDKKLGMSEERAL", "down_seq": "MLAPKTHKSGRAHSDDSVQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser834" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q8GSA7-1.848.848", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.848.848", "start_pos": 848, "end_pos": 848, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEERALSMLAPKTHKSGRAH", "down_seq": "DDSVQAAAIRIQNKFRGYKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser848" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8GSA7-1.834.834", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GSA7-1.855.855", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAEARRF", "down_seq": "PVHELDVGQILSEARHRWLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q8GSA7-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.924.924", "start_pos": 924, "end_pos": 924, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLEKVILRWRRKGAGLRGFK", "down_seq": "EALVEKMQDGTEKEEDDDFF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser924" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GSA7-1.964.964", "start_pos": 964, "end_pos": 964, "uniprot_canonical_ac": "Q8GSA7-1", "length": 1032, "uniprot_id": "CMTA3_ARATH", "protein_name": "Calmodulin-binding transcription activator 3", "refseq_ac": "NP_001118361", "refseq_name": "signal responsive 1", "gene_name": "CAMTA3; SR1", "gene_names_uniprotkb": "CAMTA3; SR1; CAMTA3; CMTA3; SARD3; SR1; T26C19.4; T26C19_4; signal responsive 1", "gene_names_refseq": "CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3; CAMTA3; SR1; T26C19.4; T26C19_4; signal responsive 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FKQGRKQTEDRLQKALARVK", "down_seq": "MVQYPEARDQYRRLLNVVND", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" }, { "database": "iPTMnet", "id": "Q8GSA7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GSA7" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser964" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "736", "end_pos": "736" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "855", "end_pos": "855" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "774", "end_pos": "774" }, { "start_pos": "780", "end_pos": "780" }, { "start_pos": "811", "end_pos": "811" }, { "start_pos": "834", "end_pos": "834" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "924", "end_pos": "924" }, { "start_pos": "964", "end_pos": "964" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82392-1.597.597", "start_pos": 597, "end_pos": 597, "uniprot_canonical_ac": "O82392-1", "length": 644, "uniprot_id": "THIC_ARATH", "protein_name": "Phosphomethylpyrimidine synthase, chloroplastic", "refseq_ac": "NP_001189634", "refseq_name": "thiaminC", "gene_name": "THIC", "gene_names_uniprotkb": "THIC; PYRIMIDINE REQUIRING; PY; T27A16.27; T27A16_27; thiaminC", "gene_names_refseq": "PYRIMIDINE REQUIRING; PY; T27A16.27; T27A16_27; THIC; thiaminC", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82392", "url": "https://www.uniprot.org/uniprotkb/O82392" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O82392", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82392" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O82392", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82392" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O82392", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82392", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FCSMKITEDIRKYAEENGYG", "down_seq": "AEEAIRQGMDAMSEEFNIAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82392", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82392" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser597" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "597", "end_pos": "597" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P38605-1.410.410", "start_pos": 410, "end_pos": 410, "uniprot_canonical_ac": "P38605-1", "length": 759, "uniprot_id": "CAS1_ARATH", "protein_name": "Cycloartenol synthase", "refseq_ac": "NP_178722", "refseq_name": "cycloartenol synthase 1", "gene_name": "CAS1", "gene_names_uniprotkb": "CAS1; CYCLOARTENOL SYNTHASE 1; CYC; T4E14.16; T4E14_16; cycloartenol synthase 1", "gene_names_refseq": "CAS1; CYCLOARTENOL SYNTHASE 1; T4E14.16; T4E14_16; cycloartenol synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conversion of a plant oxidosqualene-cycloartenol synthase to an oxidosqualene-lanosterol cyclase by random mutagenesis.", "journal": "Biochemistry", "date": "2002-07-02", "authors": "Wu Tung-Kung, Griffin John H", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" } ] }, { "title": "Oxidosqualene cyclase second-sphere residues profoundly influence the product profile.", "journal": "Chembiochem : a European journal of chemical biology", "date": "2004-11-05", "authors": "Lodeiro Silvia, Segura Michael J R, Stahl Martin, Schulz-Gasch Tanja, Matsuda Seiichi P T", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] } ], "crossref": [ { "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HLPRIHDFLWLAEDGMKMQG", "down_seq": "NGSQLWDTGFAIQAILATNL", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "C", "comment": "Produces lanosterol instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] }, { "sequence_org": "Y", "sequence_mut": "T", "comment": "Produces 65% lanosterol, 2% parkeol and 33% 9beta-delta7-lanosterol instead of cycloartenol. Produces 75% lanosterol, 0.6% parkeol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with V-481. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with N-477 or Q-477 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "532", "end_pos": "532" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P38605-1.469.469", "start_pos": 469, "end_pos": 469, "uniprot_canonical_ac": "P38605-1", "length": 759, "uniprot_id": "CAS1_ARATH", "protein_name": "Cycloartenol synthase", "refseq_ac": "NP_178722", "refseq_name": "cycloartenol synthase 1", "gene_name": "CAS1", "gene_names_uniprotkb": "CAS1; CYCLOARTENOL SYNTHASE 1; CYC; T4E14.16; T4E14_16; cycloartenol synthase 1", "gene_names_refseq": "CAS1; CYCLOARTENOL SYNTHASE 1; T4E14.16; T4E14_16; cycloartenol synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conversion of a plant oxidosqualene-cycloartenol synthase to an oxidosqualene-lanosterol cyclase by random mutagenesis.", "journal": "Biochemistry", "date": "2002-07-02", "authors": "Wu Tung-Kung, Griffin John H", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" } ] } ], "crossref": [ { "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "QVLEDCPGDLNYWYRHISKG", "down_seq": "WPFSTADHGWPISDCTAEGL", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "V", "comment": "Produces lanosterol and achilleol A instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "532", "end_pos": "532" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P38605-1.477.477", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P38605-1.481.481", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P38605-1.477.477", "start_pos": 477, "end_pos": 477, "uniprot_canonical_ac": "P38605-1", "length": 759, "uniprot_id": "CAS1_ARATH", "protein_name": "Cycloartenol synthase", "refseq_ac": "NP_178722", "refseq_name": "cycloartenol synthase 1", "gene_name": "CAS1", "gene_names_uniprotkb": "CAS1; CYCLOARTENOL SYNTHASE 1; CYC; T4E14.16; T4E14_16; cycloartenol synthase 1", "gene_names_refseq": "CAS1; CYCLOARTENOL SYNTHASE 1; T4E14.16; T4E14_16; cycloartenol synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conversion of a plant oxidosqualene-cycloartenol synthase to an oxidosqualene-lanosterol cyclase by random mutagenesis.", "journal": "Biochemistry", "date": "2002-07-02", "authors": "Wu Tung-Kung, Griffin John H", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" } ] }, { "title": "Directed evolution experiments reveal mutations at cycloartenol synthase residue His477 that dramatically alter catalysis.", "journal": "Organic letters", "date": "2002-12-12", "authors": "Segura Michael J R, Lodeiro Silvia, Meyer Michelle M, Patel Akash J, Matsuda Seiichi P T", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "12465912", "url": "https://glygen.org/publication/PubMed/12465912" } ] }, { "title": "Oxidosqualene cyclase second-sphere residues profoundly influence the product profile.", "journal": "Chembiochem : a European journal of chemical biology", "date": "2004-11-05", "authors": "Lodeiro Silvia, Segura Michael J R, Stahl Martin, Schulz-Gasch Tanja, Matsuda Seiichi P T", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] } ], "crossref": [ { "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12465912", "url": "https://glygen.org/publication/PubMed/12465912", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "DLNYWYRHISKGAWPFSTAD", "down_seq": "GWPISDCTAEGLKAALLLSK", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "N", "comment": "Produces 88% lanosterol and 12% parkeol instead of cycloartenol. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://glygen.org/publication/PubMed/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] }, { "sequence_org": "H", "sequence_mut": "Q", "comment": "Produces 22% lanosterol, 73% parkeol and 5% 9beta-delta7-lanosterol instead of cycloartenol. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://glygen.org/publication/PubMed/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] }, { "sequence_org": "H", "sequence_mut": "Y", "comment": "Produces lanosterol instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://glygen.org/publication/PubMed/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "532", "end_pos": "532" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P38605-1.469.469", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P38605-1.481.481", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P38605-1.481.481", "start_pos": 481, "end_pos": 481, "uniprot_canonical_ac": "P38605-1", "length": 759, "uniprot_id": "CAS1_ARATH", "protein_name": "Cycloartenol synthase", "refseq_ac": "NP_178722", "refseq_name": "cycloartenol synthase 1", "gene_name": "CAS1", "gene_names_uniprotkb": "CAS1; CYCLOARTENOL SYNTHASE 1; CYC; T4E14.16; T4E14_16; cycloartenol synthase 1", "gene_names_refseq": "CAS1; CYCLOARTENOL SYNTHASE 1; T4E14.16; T4E14_16; cycloartenol synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conversion of a plant oxidosqualene-cycloartenol synthase to an oxidosqualene-lanosterol cyclase by random mutagenesis.", "journal": "Biochemistry", "date": "2002-07-02", "authors": "Wu Tung-Kung, Griffin John H", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" } ] }, { "title": "Oxidosqualene cyclase second-sphere residues profoundly influence the product profile.", "journal": "Chembiochem : a European journal of chemical biology", "date": "2004-11-05", "authors": "Lodeiro Silvia, Segura Michael J R, Stahl Martin, Schulz-Gasch Tanja, Matsuda Seiichi P T", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] } ], "crossref": [ { "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "WYRHISKGAWPFSTADHGWP", "down_seq": "SDCTAEGLKAALLLSKVPKA", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "T", "comment": "Produces lanosterol and achilleol A instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] }, { "sequence_org": "I", "sequence_mut": "V", "comment": "Produces 24% lanosterol, 20% parkeol and 56% cycloartenol. Produces 75% lanosterol, 0.6% parkeol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://glygen.org/publication/PubMed/15515077" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "532", "end_pos": "532" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P38605-1.469.469", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P38605-1.477.477", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P38605-1.532.532", "start_pos": 532, "end_pos": 532, "uniprot_canonical_ac": "P38605-1", "length": 759, "uniprot_id": "CAS1_ARATH", "protein_name": "Cycloartenol synthase", "refseq_ac": "NP_178722", "refseq_name": "cycloartenol synthase 1", "gene_name": "CAS1", "gene_names_uniprotkb": "CAS1; CYCLOARTENOL SYNTHASE 1; CYC; T4E14.16; T4E14_16; cycloartenol synthase 1", "gene_names_refseq": "CAS1; CYCLOARTENOL SYNTHASE 1; T4E14.16; T4E14_16; cycloartenol synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conversion of a plant oxidosqualene-cycloartenol synthase to an oxidosqualene-lanosterol cyclase by random mutagenesis.", "journal": "Biochemistry", "date": "2002-07-02", "authors": "Wu Tung-Kung, Griffin John H", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "reference": [ { "type": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" } ] } ], "crossref": [ { "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LYEAVNVIISLQNADGGLAT", "down_seq": "ELTRSYPWLELINPAETFGD", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "H", "comment": "Produces lanosterol and achilleol A instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://glygen.org/publication/PubMed/12081472" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "532", "end_pos": "532" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P38605-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "P38605-1", "length": 759, "uniprot_id": "CAS1_ARATH", "protein_name": "Cycloartenol synthase", "refseq_ac": "NP_178722", "refseq_name": "cycloartenol synthase 1", "gene_name": "CAS1", "gene_names_uniprotkb": "CAS1; CYCLOARTENOL SYNTHASE 1; CYC; T4E14.16; T4E14_16; cycloartenol synthase 1", "gene_names_refseq": "CAS1; CYCLOARTENOL SYNTHASE 1; T4E14.16; T4E14_16; cycloartenol synthase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P38605", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P38605" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P38605", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P38605", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MWKLKIAEGG", "down_seq": "PWLRTTNNHVGRQFWEFDPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P38605", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P38605" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "410", "end_pos": "410" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "532", "end_pos": "532" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KWVQELQAQGNPNMVMALAG", "down_seq": "KSDLLDARKVTAEDAQTYAQ", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "I", "comment": "Blocks nucleotide binding; no effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] }, { "title": "ENDOSOMAL RAB EFFECTOR WITH PX-DOMAIN, an Interacting Partner of RAB5 GTPases, Regulates Membrane Trafficking to Protein Storage Vacuoles in Arabidopsis.", "journal": "The Plant cell", "date": "2016-06", "authors": "Sakurai Hajime Tajima, Inoue Takeshi, Nakano Akihiko, Ueda Takashi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "27288222", "url": "https://glygen.org/publication/PubMed/27288222" } ] }, { "title": "Activation of the Rab7 GTPase by the MON1-CCZ1 Complex Is Essential for PVC-to-Vacuole Trafficking and Plant Growth in Arabidopsis.", "journal": "The Plant cell", "date": "2014-05", "authors": "Cui Yong, Zhao Qiong, Gao Caiji, Ding Yu, Zeng Yonglun, Ueda Takashi, Nakano Akihiko, Jiang Liwen", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "24824487", "url": "https://glygen.org/publication/PubMed/24824487" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27288222", "url": "https://glygen.org/publication/PubMed/27288222", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24824487", "url": "https://glygen.org/publication/PubMed/24824487", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "MAAAGNKSINAKLVLLGD", "down_seq": "GAGKSSLVLRFVKDQFVEFQ", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "T", "comment": "Loss of interaction with VPS9A. Loss of interaction with MON1. Loss of interaction with EREX.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" }, { "database": "PubMed", "id": "27288222", "url": "https://glygen.org/publication/PubMed/27288222" }, { "database": "PubMed", "id": "24824487", "url": "https://glygen.org/publication/PubMed/24824487" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9SN68-1.24.24", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9SN68-1.36.36", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGNKSINAKLVLLGDVGAGK", "down_seq": "SLVLRFVKDQFVEFQESTIG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "N", "comment": "Dominant negative (GDP-bound form); no effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9SN68-1.19.19", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9SN68-1.36.36", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9SN68-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9SN68-1.44.44", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "LGDVGAGKSSLVLRFVKDQF", "down_seq": "EFQESTIGAAFFSQTLAVND", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "P", "comment": "No effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9SN68-1.19.19", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9SN68-1.24.24", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9SN68-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9SN68-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9SN68-1.46.46", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9SN68-1.47.47", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKSSLVLRFVKDQFVEFQES", "down_seq": "IGAAFFSQTLAVNDATVKFE", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9SN68-1.24.24", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9SN68-1.36.36", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9SN68-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9SN68-1.46.46", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9SN68-1.47.47", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "SSLVLRFVKDQFVEFQESTI", "down_seq": "AAFFSQTLAVNDATVKFEIW", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "P", "comment": "No effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9SN68-1.24.24", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9SN68-1.36.36", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9SN68-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9SN68-1.46.46", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9SN68-1.47.47", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "LVLRFVKDQFVEFQESTIGA", "down_seq": "FFSQTLAVNDATVKFEIWDT", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "D", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9SN68-1.36.36", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9SN68-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9SN68-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9SN68-1.47.47", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "VLRFVKDQFVEFQESTIGAA", "down_seq": "FSQTLAVNDATVKFEIWDTA", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9SN68-1.36.36", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9SN68-1.42.42", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9SN68-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9SN68-1.46.46", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9SN68-1.67.67", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "GAAFFSQTLAVNDATVKFEI", "down_seq": "DTAGQERYHSLAPMYYRGAA", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9SN68-1.44.44", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9SN68-1.46.46", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q9SN68-1.47.47", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9SN68-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9SN68-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9SN68-1.74.74", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9SN68-1.75.75", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9SN68-1.78.78", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9SN68-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "FFSQTLAVNDATVKFEIWDT", "down_seq": "GQERYHSLAPMYYRGAAAAI", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "G", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9SN68-1.47.47", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9SN68-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9SN68-1.74.74", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9SN68-1.75.75", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9SN68-1.78.78", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9SN68-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ara6, a plant-unique novel type Rab GTPase, functions in the endocytic pathway of Arabidopsis thaliana.", "journal": "The EMBO journal", "date": "2001-09-03", "authors": "Ueda T, Yamaguchi M, Uchimiya H, Nakano A", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "11532937", "url": "https://glygen.org/publication/PubMed/11532937" } ] }, { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11532937", "url": "https://glygen.org/publication/PubMed/11532937", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "SQTLAVNDATVKFEIWDTAG", "down_seq": "ERYHSLAPMYYRGAAAAIIV", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "E", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "11532937", "url": "https://glygen.org/publication/PubMed/11532937" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] }, { "sequence_org": "Q", "sequence_mut": "L", "comment": "Constitutively active (GTP-bound form); loss of targeting to plasma membrane and interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "11532937", "url": "https://glygen.org/publication/PubMed/11532937" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9SN68-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9SN68-1.74.74", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9SN68-1.75.75", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9SN68-1.78.78", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9SN68-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VNDATVKFEIWDTAGQERYH", "down_seq": "LAPMYYRGAAAAIIVFDVTN", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9SN68-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9SN68-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9SN68-1.75.75", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9SN68-1.78.78", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9SN68-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "NDATVKFEIWDTAGQERYHS", "down_seq": "APMYYRGAAAAIIVFDVTNQ", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9SN68-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9SN68-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9SN68-1.74.74", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9SN68-1.78.78", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9SN68-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "TVKFEIWDTAGQERYHSLAP", "down_seq": "YYRGAAAAIIVFDVTNQASF", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9SN68-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9SN68-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9SN68-1.74.74", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9SN68-1.75.75", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9SN68-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5\u00b7Vps9 system.", "journal": "The Journal of biological chemistry", "date": "2010-11-19", "authors": "Uejima Tamami, Ihara Kentaro, Goh Tatsuaki, Ito Emi, Sunada Mariko, Ueda Takashi, Nakano Akihiko, Wakatsuki Soichi", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "reference": [ { "type": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "crossref": [ { "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VKFEIWDTAGQERYHSLAPM", "down_seq": "YRGAAAAIIVFDVTNQASFE", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://glygen.org/publication/PubMed/20833725" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9SN68-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9SN68-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9SN68-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9SN68-1.74.74", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9SN68-1.75.75", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9SN68-1.78.78", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SN68-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "Q9SN68-1", "length": 200, "uniprot_id": "RAF2B_ARATH", "protein_name": "Ras-related protein RABF2b", "refseq_ac": "NP_193699", "refseq_name": "Ras-related small GTP-binding family protein", "gene_name": "ARA7; RABF2B", "gene_names_uniprotkb": "ARA7; RABF2B; ARA-7; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RAB5B; RABF2B", "gene_names_refseq": "ARA-7; ARA7; ARABIDOPSIS RAB GTPASE HOMOLOG F2B; ATRAB-F2B; ATRAB5B; ATRABF2B; F24J7.190; F24J7_190; RAB GTPASE HOMOLOG F2B; RAB-F2B; RABF2B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9SN68", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SN68", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "NGLFFMETSAKTATNVKEIF", "down_seq": "EIARRLPRVQPTENPTGMVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SN68", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SN68" } ], "site_lbl": "Tyr165" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "44", "end_pos": "44" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5ICL9-1.321.321", "start_pos": 321, "end_pos": 321, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-01", "authors": "Liu Guosheng, Holub Eric B, Alonso Jose M, Ecker Joseph R, Fobert Pierre R", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "15634206", "url": "https://glygen.org/publication/PubMed/15634206" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15634206", "url": "https://glygen.org/publication/PubMed/15634206", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "VLDLDMADVNFRNSRGYTVL", "down_seq": "IAAMRREPTIIIPLIQKGAN", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "Y", "comment": "Abolishes interaction with TGA2 or with TGA7.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "15634206", "url": "https://glygen.org/publication/PubMed/15634206" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.392.392", "start_pos": 392, "end_pos": 392, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "KEPSKYRLCIDILEREIRRN", "down_seq": "LVSGDTPTCSHSMPEDLQMR", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "Q", "comment": "Normal salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.419.419", "start_pos": 419, "end_pos": 419, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "PTCSHSMPEDLQMRLLYLEK", "down_seq": "VGLAQLFFPAEANVAMDVAN", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] }, { "sequence_org": "R", "sequence_mut": "K", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] }, { "sequence_org": "R", "sequence_mut": "Q", "comment": "Impaired salicylic acid (SA) binding. Interacts with NPR1 in the absence of SA, and lost ability of SA to repress this interaction.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q5ICL9-1.420.420", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5ICL9-1.423.423", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q5ICL9-1.426.426", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q5ICL9-1.431.431", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q5ICL9-1.434.434", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.420.420", "start_pos": 420, "end_pos": 420, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "TCSHSMPEDLQMRLLYLEKR", "down_seq": "GLAQLFFPAEANVAMDVANV", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q5ICL9-1.419.419", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q5ICL9-1.423.423", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q5ICL9-1.426.426", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q5ICL9-1.431.431", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q5ICL9-1.434.434", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.423.423", "start_pos": 423, "end_pos": 423, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "HSMPEDLQMRLLYLEKRVGL", "down_seq": "QLFFPAEANVAMDVANVEGT", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "E", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] }, { "sequence_org": "A", "sequence_mut": "F", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q5ICL9-1.419.419", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q5ICL9-1.420.420", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q5ICL9-1.426.426", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5ICL9-1.431.431", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q5ICL9-1.434.434", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "PEDLQMRLLYLEKRVGLAQL", "down_seq": "FPAEANVAMDVANVEGTSEC", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "L", "comment": "Strongly reduced salicylic acid (SA) binding. Interacts with NPR1 in the absence of SA, and lost ability of SA to repress this interaction, thus leading to faster NPR1 degradation but reduced PR1 induction. Strongly increased salicylic acid (SA) binding leading to restored ability of SA to repress NPR1 binding and delayed NPR1 degradation resulting in increased levels of SA-induced PR1 gene expression; when associated with G-459.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q5ICL9-1.419.419", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q5ICL9-1.420.420", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q5ICL9-1.423.423", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q5ICL9-1.431.431", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5ICL9-1.434.434", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.431.431", "start_pos": 431, "end_pos": 431, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "MRLLYLEKRVGLAQLFFPAE", "down_seq": "NVAMDVANVEGTSECTGLLT", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "L", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] }, { "sequence_org": "A", "sequence_mut": "R", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q5ICL9-1.419.419", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q5ICL9-1.420.420", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q5ICL9-1.423.423", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q5ICL9-1.426.426", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q5ICL9-1.434.434", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.434.434", "start_pos": 434, "end_pos": 434, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "LYLEKRVGLAQLFFPAEANV", "down_seq": "MDVANVEGTSECTGLLTPPP", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "R", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] }, { "sequence_org": "A", "sequence_mut": "V", "comment": "Reduced salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5ICL9-1.419.419", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q5ICL9-1.420.420", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q5ICL9-1.423.423", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q5ICL9-1.426.426", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q5ICL9-1.431.431", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.459.459", "start_pos": 459, "end_pos": 459, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NVEGTSECTGLLTPPPSNDT", "down_seq": "ENLGKVDLNETPYVQTKRML", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Slightly increased salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] }, { "sequence_org": "T", "sequence_mut": "G", "comment": "Slightly increased salicylic acid (SA) binding. Strongly increased salicylic acid (SA) binding leading to restored ability of SA to repress NPR1 binding and delayed NPR1 degradation resulting in increased levels of SA-induced PR1 gene expression; when associated with L-426.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q5ICL9-1.469.469", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q5ICL9-1.470.470", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.469.469", "start_pos": 469, "end_pos": 469, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "LLTPPPSNDTTENLGKVDLN", "down_seq": "TPYVQTKRMLTRMKALMKTV", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "I", "comment": "Normal salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q5ICL9-1.459.459", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q5ICL9-1.470.470", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q5ICL9-1.488.488", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q5ICL9-1.489.489", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.470.470", "start_pos": 470, "end_pos": 470, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LTPPPSNDTTENLGKVDLNE", "down_seq": "PYVQTKRMLTRMKALMKTVE", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Slightly increased salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q5ICL9-1.459.459", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q5ICL9-1.469.469", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q5ICL9-1.488.488", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q5ICL9-1.489.489", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NETPYVQTKRMLTRMKALMK", "down_seq": "VETGRRYFPSCYEVLDKYMD", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Reduced salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] }, { "sequence_org": "T", "sequence_mut": "V", "comment": "Normal salicylic acid (SA) binding. Interacts with NPR1 in the absence of SA, but this interaction is repressed by SA.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q5ICL9-1.469.469", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q5ICL9-1.470.470", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q5ICL9-1.489.489", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5ICL9-1.496.496", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q5ICL9-1.500.500", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q5ICL9-1.503.503", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q5ICL9-1.505.505", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.489.489", "start_pos": 489, "end_pos": 489, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "ETPYVQTKRMLTRMKALMKT", "down_seq": "ETGRRYFPSCYEVLDKYMDQ", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Impaired salicylic acid (SA) binding. Interacts with NPR1 in the absence of SA, and lost ability of SA to repress this interaction.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q5ICL9-1.469.469", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q5ICL9-1.470.470", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q5ICL9-1.488.488", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q5ICL9-1.496.496", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q5ICL9-1.500.500", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q5ICL9-1.503.503", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q5ICL9-1.505.505", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.496.496", "start_pos": 496, "end_pos": 496, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "KRMLTRMKALMKTVETGRRY", "down_seq": "PSCYEVLDKYMDQYMDEEIP", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q5ICL9-1.488.488", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q5ICL9-1.489.489", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5ICL9-1.500.500", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q5ICL9-1.503.503", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q5ICL9-1.505.505", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.500.500", "start_pos": 500, "end_pos": 500, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TRMKALMKTVETGRRYFPSC", "down_seq": "EVLDKYMDQYMDEEIPDMSY", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "S", "comment": "Normal salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q5ICL9-1.488.488", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q5ICL9-1.489.489", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q5ICL9-1.496.496", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q5ICL9-1.503.503", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q5ICL9-1.505.505", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.503.503", "start_pos": 503, "end_pos": 503, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "KALMKTVETGRRYFPSCYEV", "down_seq": "DKYMDQYMDEEIPDMSYPEK", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5ICL9-1.488.488", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q5ICL9-1.489.489", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q5ICL9-1.496.496", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q5ICL9-1.500.500", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q5ICL9-1.505.505", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.505.505", "start_pos": 505, "end_pos": 505, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LMKTVETGRRYFPSCYEVLD", "down_seq": "YMDQYMDEEIPDMSYPEKGT", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Slightly increased salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] }, { "sequence_org": "K", "sequence_mut": "Q", "comment": "Slightly reduced salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q5ICL9-1.488.488", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q5ICL9-1.489.489", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q5ICL9-1.496.496", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q5ICL9-1.500.500", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q5ICL9-1.503.503", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5ICL9-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q5ICL9-1", "length": 574, "uniprot_id": "NPR4_ARATH", "protein_name": "Regulatory protein NPR4", "refseq_ac": "NP_001328027", "refseq_name": "NPR1-like protein 4", "gene_name": "NPR4", "gene_names_uniprotkb": "NPR4; ATNPR4; NPR1-like protein 4; T16H5.20; T16H5_20", "gene_names_refseq": "ATNPR4; NPR1-like protein 4; NPR4; T16H5.20; T16H5_20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAATAIEPSS", "down_seq": "ISFTSSHLSNPSPVVTTYHS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5ICL9", "url": "https://www.uniprot.org/uniprotkb/Q5ICL9" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "321", "end_pos": "321" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "431", "end_pos": "431" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "470", "end_pos": "470" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "505", "end_pos": "505" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82645-1.399.399", "start_pos": 399, "end_pos": 399, "uniprot_canonical_ac": "O82645-1", "length": 488, "uniprot_id": "IQM1_ARATH", "protein_name": "IQ domain-containing protein IQM1", "refseq_ac": "NP_195031", "refseq_name": "calmodulin-binding family protein", "gene_name": "EDA39; IQM1", "gene_names_uniprotkb": "EDA39; IQM1; AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1", "gene_names_refseq": "AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1; embryo sac development arrest 39", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" }, { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSTADEEEERKEVSEEVEIP", "down_seq": "EKEERARPVFDPVKRLSCKW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser399" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82645-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "O82645-1", "length": 488, "uniprot_id": "IQM1_ARATH", "protein_name": "IQ domain-containing protein IQM1", "refseq_ac": "NP_195031", "refseq_name": "calmodulin-binding family protein", "gene_name": "EDA39; IQM1", "gene_names_uniprotkb": "EDA39; IQM1; AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1", "gene_names_refseq": "AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1; embryo sac development arrest 39", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFKRDDTNRHQNSPKSTMER", "down_seq": "LSFNSWEVPKETKTDSDFEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser43" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O82645-1.45.45", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O82645-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O82645-1.59.59", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82645-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "O82645-1", "length": 488, "uniprot_id": "IQM1_ARATH", "protein_name": "IQ domain-containing protein IQM1", "refseq_ac": "NP_195031", "refseq_name": "calmodulin-binding family protein", "gene_name": "EDA39; IQM1", "gene_names_uniprotkb": "EDA39; IQM1; AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1", "gene_names_refseq": "AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1; embryo sac development arrest 39", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" }, { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRDDTNRHQNSPKSTMERSL", "down_seq": "FNSWEVPKETKTDSDFEVLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser45" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O82645-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O82645-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O82645-1.59.59", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82645-1.482.482", "start_pos": 482, "end_pos": 482, "uniprot_canonical_ac": "O82645-1", "length": 488, "uniprot_id": "IQM1_ARATH", "protein_name": "IQ domain-containing protein IQM1", "refseq_ac": "NP_195031", "refseq_name": "calmodulin-binding family protein", "gene_name": "EDA39; IQM1", "gene_names_uniprotkb": "EDA39; IQM1; AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1", "gene_names_refseq": "AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1; embryo sac development arrest 39", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPRPSPKVRVSPRLAYMGIP", "down_seq": "PRAVKC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser482" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82645-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "O82645-1", "length": 488, "uniprot_id": "IQM1_ARATH", "protein_name": "IQ domain-containing protein IQM1", "refseq_ac": "NP_195031", "refseq_name": "calmodulin-binding family protein", "gene_name": "EDA39; IQM1", "gene_names_uniprotkb": "EDA39; IQM1; AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1", "gene_names_refseq": "AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1; embryo sac development arrest 39", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTNRHQNSPKSTMERSLSFN", "down_seq": "WEVPKETKTDSDFEVLETKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser48" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O82645-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O82645-1.45.45", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O82645-1.59.59", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82645-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "O82645-1", "length": 488, "uniprot_id": "IQM1_ARATH", "protein_name": "IQ domain-containing protein IQM1", "refseq_ac": "NP_195031", "refseq_name": "calmodulin-binding family protein", "gene_name": "EDA39; IQM1", "gene_names_uniprotkb": "EDA39; IQM1; AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1", "gene_names_refseq": "AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1; embryo sac development arrest 39", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TMERSLSFNSWEVPKETKTD", "down_seq": "DFEVLETKKSTPNTLNGRNC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser59" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O82645-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O82645-1.45.45", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O82645-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82645-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "O82645-1", "length": 488, "uniprot_id": "IQM1_ARATH", "protein_name": "IQ domain-containing protein IQM1", "refseq_ac": "NP_195031", "refseq_name": "calmodulin-binding family protein", "gene_name": "EDA39; IQM1", "gene_names_uniprotkb": "EDA39; IQM1; AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1", "gene_names_refseq": "AtIQM1; EDA39; F4I10.2; IQ-motif protein 1; IQM1; embryo sac development arrest 39", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82645", "url": "https://www.uniprot.org/uniprotkb/O82645" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CERIQIKKPTVTPPEPFVFF", "down_seq": "PRPVTELDAAATTLQKVYKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82645", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82645" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser99" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.136.136", "start_pos": 136, "end_pos": 136, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Single amino acid substitutions at the acyl-CoA-binding domain interrupt 14[C]palmitoyl-CoA binding of ACBP2, an Arabidopsis acyl-CoA-binding protein with ankyrin repeats.", "journal": "Plant molecular biology", "date": "2000-12", "authors": "Chye M L, Li H Y, Yung M H", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TTAAADRLSQKVPSDVQQQL", "down_seq": "GLYKIATEGPCTAPQPSALK", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Loss of palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9STP8-1.140.140", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9STP8-1.142.142", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9STP8-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9STP8-1.152.152", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.140.140", "start_pos": 140, "end_pos": 140, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Single amino acid substitutions at the acyl-CoA-binding domain interrupt 14[C]palmitoyl-CoA binding of ACBP2, an Arabidopsis acyl-CoA-binding protein with ankyrin repeats.", "journal": "Plant molecular biology", "date": "2000-12", "authors": "Chye M L, Li H Y, Yung M H", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "ADRLSQKVPSDVQQQLYGLY", "down_seq": "IATEGPCTAPQPSALKMTAR", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9STP8-1.136.136", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9STP8-1.142.142", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9STP8-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9STP8-1.152.152", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.", "journal": "Plant molecular biology", "date": "2004-05", "authors": "Leung Ka-Chun, Li Hong-Ye, Mishra Girish, Chye Mee-Len", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "RLSQKVPSDVQQQLYGLYKI", "down_seq": "TEGPCTAPQPSALKMTARAK", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "D", "comment": "Slight increase of palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9STP8-1.136.136", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9STP8-1.140.140", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9STP8-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9STP8-1.152.152", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9STP8-1.162.162", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.", "journal": "Plant molecular biology", "date": "2004-05", "authors": "Leung Ka-Chun, Li Hong-Ye, Mishra Girish, Chye Mee-Len", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "QKVPSDVQQQLYGLYKIATE", "down_seq": "PCTAPQPSALKMTARAKWQA", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Normal palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9STP8-1.136.136", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9STP8-1.140.140", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9STP8-1.142.142", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9STP8-1.152.152", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9STP8-1.162.162", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9STP8-1.163.163", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.", "journal": "Plant molecular biology", "date": "2004-05", "authors": "Leung Ka-Chun, Li Hong-Ye, Mishra Girish, Chye Mee-Len", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "QQQLYGLYKIATEGPCTAPQ", "down_seq": "SALKMTARAKWQAWQKLGAM", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "A", "comment": "Slight increase of palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9STP8-1.136.136", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9STP8-1.140.140", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9STP8-1.142.142", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9STP8-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9STP8-1.162.162", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9STP8-1.163.163", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9STP8-1.166.166", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Single amino acid substitutions at the acyl-CoA-binding domain interrupt 14[C]palmitoyl-CoA binding of ACBP2, an Arabidopsis acyl-CoA-binding protein with ankyrin repeats.", "journal": "Plant molecular biology", "date": "2000-12", "authors": "Chye M L, Li H Y, Yung M H", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "ATEGPCTAPQPSALKMTARA", "down_seq": "WQAWQKLGAMPPEEAMEKYI", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9STP8-1.142.142", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q9STP8-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9STP8-1.152.152", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9STP8-1.163.163", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9STP8-1.166.166", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9STP8-1.177.177", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9STP8-1.181.181", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.", "journal": "Plant molecular biology", "date": "2004-05", "authors": "Leung Ka-Chun, Li Hong-Ye, Mishra Girish, Chye Mee-Len", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "TEGPCTAPQPSALKMTARAK", "down_seq": "QAWQKLGAMPPEEAMEKYIE", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Normal palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9STP8-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9STP8-1.152.152", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9STP8-1.162.162", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9STP8-1.166.166", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9STP8-1.177.177", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9STP8-1.181.181", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.", "journal": "Plant molecular biology", "date": "2004-05", "authors": "Leung Ka-Chun, Li Hong-Ye, Mishra Girish, Chye Mee-Len", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "PCTAPQPSALKMTARAKWQA", "down_seq": "QKLGAMPPEEAMEKYIEIVT", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Slight increase of palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9STP8-1.152.152", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9STP8-1.162.162", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9STP8-1.163.163", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9STP8-1.177.177", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9STP8-1.181.181", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.", "journal": "Plant molecular biology", "date": "2004-05", "authors": "Leung Ka-Chun, Li Hong-Ye, Mishra Girish, Chye Mee-Len", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "MTARAKWQAWQKLGAMPPEE", "down_seq": "MEKYIEIVTQLYPTWLDGGV", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "S", "comment": "Slight increase of palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "15604682", "url": "https://glygen.org/publication/PubMed/15604682" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9STP8-1.162.162", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9STP8-1.163.163", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9STP8-1.166.166", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9STP8-1.181.181", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.181.181", "start_pos": 181, "end_pos": 181, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Single amino acid substitutions at the acyl-CoA-binding domain interrupt 14[C]palmitoyl-CoA binding of ACBP2, an Arabidopsis acyl-CoA-binding protein with ankyrin repeats.", "journal": "Plant molecular biology", "date": "2000-12", "authors": "Chye M L, Li H Y, Yung M H", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AKWQAWQKLGAMPPEEAMEK", "down_seq": "IEIVTQLYPTWLDGGVKAGS", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Loss of palmitoyl-CoA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" }, { "database": "PubMed", "id": "11202434", "url": "https://glygen.org/publication/PubMed/11202434" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9STP8-1.162.162", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9STP8-1.163.163", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9STP8-1.166.166", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9STP8-1.177.177", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DGGVKAGSRGGDDAASNSRG", "down_seq": "MGPVFSSLVYDEESENELKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr214" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q9STP8-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9STP8-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9STP8-1.224.224", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSRGGDDAASNSRGTMGPVF", "down_seq": "SLVYDEESENELKIDAIHGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser220" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9STP8-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9STP8-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9STP8-1.224.224", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.221.221", "start_pos": 221, "end_pos": 221, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRGGDDAASNSRGTMGPVFS", "down_seq": "LVYDEESENELKIDAIHGFA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser221" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9STP8-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9STP8-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9STP8-1.224.224", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.224.224", "start_pos": 224, "end_pos": 224, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDDAASNSRGTMGPVFSSLV", "down_seq": "DEESENELKIDAIHGFAREG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr224" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9STP8-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9STP8-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9STP8-1.221.221", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.268.268", "start_pos": 268, "end_pos": 268, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NLLKSIESGIPVNARDSEGR", "down_seq": "PLHWAIDRGHLNIAKVLVDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr268" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9STP8-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q9STP8-1", "length": 354, "uniprot_id": "ACBP2_ARATH", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "refseq_ac": "NP_194507", "refseq_name": "acyl-CoA binding protein 2", "gene_name": "ACBP2", "gene_names_uniprotkb": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "gene_names_refseq": "ACBP2; ACYL-COA BINDING PROTEIN ACBP2; AtACBP2; T27E11.20; T27E11_20; acyl-CoA binding protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDSSCGGFGGEADSLVAEQG", "down_seq": "SRSDSVAGDDSEEDDDWEGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9STP8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9STP8" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "140", "end_pos": "140" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "181", "end_pos": "181" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9M0K4-1.258.258", "start_pos": 258, "end_pos": 258, "uniprot_canonical_ac": "Q9M0K4-1", "length": 283, "uniprot_id": "LAF1_ARATH", "protein_name": "Transcription factor LAF1", "refseq_ac": "NP_194286", "refseq_name": "myb domain protein 18", "gene_name": "LAF1", "gene_names_uniprotkb": "LAF1; AtMYB18; LONG AFTER FAR-RED LIGHT 1; M7J2.70; M7J2_70; MYB18; myb domain protein 18", "gene_names_refseq": "AtMYB18; LAF1; LONG AFTER FAR-RED LIGHT 1; M7J2.70; M7J2_70; MYB18; myb domain protein 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M0K4", "url": "https://www.uniprot.org/uniprotkb/Q9M0K4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "LAF1, a MYB transcription activator for phytochrome A signaling.", "journal": "Genes & development", "date": "2001-10-01", "authors": "Ballesteros M L, Bolle C, Lois L M, Moore J M, Vielle-Calzada J P, Grossniklaus U, Chua N H", "evidence": [ { "database": "UniProtKB", "id": "Q9M0K4", "url": "https://www.uniprot.org/uniprotkb/Q9M0K4" } ], "reference": [ { "type": "PubMed", "id": "11581165", "url": "https://glygen.org/publication/PubMed/11581165" } ] } ], "crossref": [ { "id": "Q9M0K4", "url": "https://www.uniprot.org/uniprotkb/Q9M0K4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11581165", "url": "https://glygen.org/publication/PubMed/11581165", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "MMINNSNWTLNDIVFGSKCK", "down_seq": "QEHHIYREASDCNSSAEFFS", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes the speckles localization in the nucleus possibly due to the absence of sumoylation at this residue.", "evidence": [ { "database": "UniProtKB", "id": "Q9M0K4", "url": "https://www.uniprot.org/uniprotkb/Q9M0K4" }, { "database": "PubMed", "id": "11581165", "url": "https://glygen.org/publication/PubMed/11581165" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "258", "end_pos": "258" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25819-1.439.439", "start_pos": 439, "end_pos": 439, "uniprot_canonical_ac": "P25819-1", "length": 492, "uniprot_id": "CATA2_ARATH", "protein_name": "Catalase-2", "refseq_ac": "NP_195235", "refseq_name": "catalase 2", "gene_name": "CAT2", "gene_names_uniprotkb": "CAT2; CATALASE; CAT; M4E13.140; T12J5.2; catalase 2", "gene_names_refseq": "CAT2; CATALASE; T12J5.2; catalase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25819", "url": "https://www.uniprot.org/uniprotkb/P25819" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P25819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25819" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P25819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25819", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RCIIEKENNFKEPGERYRTF", "down_seq": "PERQERFIQRWIDALSDPRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25819" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr439" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "439", "end_pos": "439" }, { "start_pos": "491", "end_pos": "491" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25819-1.491.491", "start_pos": 491, "end_pos": 491, "uniprot_canonical_ac": "P25819-1", "length": 492, "uniprot_id": "CATA2_ARATH", "protein_name": "Catalase-2", "refseq_ac": "NP_195235", "refseq_name": "catalase 2", "gene_name": "CAT2", "gene_names_uniprotkb": "CAT2; CATALASE; CAT; M4E13.140; T12J5.2; catalase 2", "gene_names_refseq": "CAT2; CATALASE; T12J5.2; catalase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25819", "url": "https://www.uniprot.org/uniprotkb/P25819" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P25819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25819" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P25819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25819" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P25819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25819", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WSQADKSLGQKLASRLNVRP", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25819" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser491" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "439", "end_pos": "439" }, { "start_pos": "491", "end_pos": "491" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81905-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "O81905-1", "length": 850, "uniprot_id": "SD18_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-8", "refseq_ac": "NP_193869", "refseq_name": "receptor kinase 3", "gene_name": "RK3; SD18", "gene_names_uniprotkb": "RK3; SD18; ARK3; T6K22.110; T6K22_110; receptor kinase 3", "gene_names_refseq": "ARK3; RK3; T6K22.110; T6K22_110; receptor kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KISDSNLVVLDQSDTPVWST", "down_seq": "LTGGDVRSPLVAELLDNGNF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn118", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "685", "end_pos": "685" }, { "start_pos": "827", "end_pos": "827" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81905-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "O81905-1", "length": 850, "uniprot_id": "SD18_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-8", "refseq_ac": "NP_193869", "refseq_name": "receptor kinase 3", "gene_name": "RK3; SD18", "gene_names_uniprotkb": "RK3; SD18; ARK3; T6K22.110; T6K22_110; receptor kinase 3", "gene_names_refseq": "ARK3; RK3; T6K22.110; T6K22_110; receptor kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WNGIRFSGVPEMQPFEYMVF", "down_seq": "FTTSKEEVTYSFRITKSDVY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn242", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "685", "end_pos": "685" }, { "start_pos": "827", "end_pos": "827" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81905-1.387.387", "start_pos": 387, "end_pos": 387, "uniprot_canonical_ac": "O81905-1", "length": 850, "uniprot_id": "SD18_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-8", "refseq_ac": "NP_193869", "refseq_name": "receptor kinase 3", "gene_name": "RK3; SD18", "gene_names_uniprotkb": "RK3; SD18; ARK3; T6K22.110; T6K22_110; receptor kinase 3", "gene_names_refseq": "ARK3; RK3; T6K22.110; T6K22_110; receptor kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ASVDRGIGVKECEQKCLRDC", "down_seq": "CTAFANTDIRGSGSGCVTWT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn387", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "685", "end_pos": "685" }, { "start_pos": "827", "end_pos": "827" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81905-1.437.437", "start_pos": 437, "end_pos": 437, "uniprot_canonical_ac": "O81905-1", "length": 850, "uniprot_id": "SD18_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-8", "refseq_ac": "NP_193869", "refseq_name": "receptor kinase 3", "gene_name": "RK3; SD18", "gene_names_uniprotkb": "RK3; SD18; ARK3; T6K22.110; T6K22_110; receptor kinase 3", "gene_names_refseq": "ARK3; RK3; T6K22.110; T6K22_110; receptor kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AKGGQDLYVRLAATDLEDKR", "down_seq": "RSAKIIGSSIGVSVLLLLSF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn437", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "685", "end_pos": "685" }, { "start_pos": "827", "end_pos": "827" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81905-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "O81905-1", "length": 850, "uniprot_id": "SD18_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-8", "refseq_ac": "NP_193869", "refseq_name": "receptor kinase 3", "gene_name": "RK3; SD18", "gene_names_uniprotkb": "RK3; SD18; ARK3; T6K22.110; T6K22_110; receptor kinase 3", "gene_names_refseq": "ARK3; RK3; T6K22.110; T6K22_110; receptor kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PAYSISANTLSASESLTISS", "down_seq": "NTIVSPGNVFELGFFKPGLD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn43", "evidence": [ { "id": "O81905", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81905#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "685", "end_pos": "685" }, { "start_pos": "827", "end_pos": "827" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81905-1.685.685", "start_pos": 685, "end_pos": 685, "uniprot_canonical_ac": "O81905-1", "length": 850, "uniprot_id": "SD18_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-8", "refseq_ac": "NP_193869", "refseq_name": "receptor kinase 3", "gene_name": "RK3; SD18", "gene_names_uniprotkb": "RK3; SD18; ARK3; T6K22.110; T6K22_110; receptor kinase 3", "gene_names_refseq": "ARK3; RK3; T6K22.110; T6K22_110; receptor kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81905" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81905", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PKISDFGMARIFGRDETEAN", "down_seq": "RKVVGTYGYMSPEYAMDGIF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81905" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr685" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "685", "end_pos": "685" }, { "start_pos": "827", "end_pos": "827" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81905-1.827.827", "start_pos": 827, "end_pos": 827, "uniprot_canonical_ac": "O81905-1", "length": 850, "uniprot_id": "SD18_ARATH", "protein_name": "Receptor-like serine/threonine-protein kinase SD1-8", "refseq_ac": "NP_193869", "refseq_name": "receptor kinase 3", "gene_name": "RK3; SD18", "gene_names_uniprotkb": "RK3; SD18; ARK3; T6K22.110; T6K22_110; receptor kinase 3", "gene_names_refseq": "ARK3; RK3; T6K22.110; T6K22_110; receptor kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81905", "url": "https://www.uniprot.org/uniprotkb/O81905" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81905" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O81905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81905", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IPQPKAPGYCLERSLLDTDS", "down_seq": "SSKQRDDESWTVNQITVSVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81905" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser827" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "43", "end_pos": "43" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "685", "end_pos": "685" }, { "start_pos": "827", "end_pos": "827" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25853-1.466.466", "start_pos": 466, "end_pos": 466, "uniprot_canonical_ac": "P25853-1", "length": 498, "uniprot_id": "BAM5_ARATH", "protein_name": "Beta-amylase 5", "refseq_ac": "NP_567460", "refseq_name": "beta-amylase 5", "gene_name": "BAM5", "gene_names_uniprotkb": "BAM5; AT-BETA-AMY; ATBETA-AMY; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5; dl3650c", "gene_names_refseq": "ARABIDOPSIS THALIANA BETA-AMYLASE; AT-BETA-AMY; ATBETA-AMY; BAM5; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25853", "url": "https://www.uniprot.org/uniprotkb/P25853" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P25853-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ADQDYCGDAAKYGHEIVPLK", "down_seq": "SNSQLTLEDIADAAQPSGAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr466" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P25853-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P25853-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P25853-1.472.472", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25853-1.467.467", "start_pos": 467, "end_pos": 467, "uniprot_canonical_ac": "P25853-1", "length": 498, "uniprot_id": "BAM5_ARATH", "protein_name": "Beta-amylase 5", "refseq_ac": "NP_567460", "refseq_name": "beta-amylase 5", "gene_name": "BAM5", "gene_names_uniprotkb": "BAM5; AT-BETA-AMY; ATBETA-AMY; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5; dl3650c", "gene_names_refseq": "ARABIDOPSIS THALIANA BETA-AMYLASE; AT-BETA-AMY; ATBETA-AMY; BAM5; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25853", "url": "https://www.uniprot.org/uniprotkb/P25853" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P25853-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DQDYCGDAAKYGHEIVPLKT", "down_seq": "NSQLTLEDIADAAQPSGAFK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser467" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P25853-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P25853-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P25853-1.472.472", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25853-1.469.469", "start_pos": 469, "end_pos": 469, "uniprot_canonical_ac": "P25853-1", "length": 498, "uniprot_id": "BAM5_ARATH", "protein_name": "Beta-amylase 5", "refseq_ac": "NP_567460", "refseq_name": "beta-amylase 5", "gene_name": "BAM5", "gene_names_uniprotkb": "BAM5; AT-BETA-AMY; ATBETA-AMY; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5; dl3650c", "gene_names_refseq": "ARABIDOPSIS THALIANA BETA-AMYLASE; AT-BETA-AMY; ATBETA-AMY; BAM5; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25853", "url": "https://www.uniprot.org/uniprotkb/P25853" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P25853-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DYCGDAAKYGHEIVPLKTSN", "down_seq": "QLTLEDIADAAQPSGAFKWD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser469" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P25853-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P25853-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P25853-1.472.472", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25853-1.472.472", "start_pos": 472, "end_pos": 472, "uniprot_canonical_ac": "P25853-1", "length": 498, "uniprot_id": "BAM5_ARATH", "protein_name": "Beta-amylase 5", "refseq_ac": "NP_567460", "refseq_name": "beta-amylase 5", "gene_name": "BAM5", "gene_names_uniprotkb": "BAM5; AT-BETA-AMY; ATBETA-AMY; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5; dl3650c", "gene_names_refseq": "ARABIDOPSIS THALIANA BETA-AMYLASE; AT-BETA-AMY; ATBETA-AMY; BAM5; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25853", "url": "https://www.uniprot.org/uniprotkb/P25853" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GDAAKYGHEIVPLKTSNSQL", "down_seq": "LEDIADAAQPSGAFKWDSET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr472" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P25853-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P25853-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P25853-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P25853-1.490.490", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25853-1.490.490", "start_pos": 490, "end_pos": 490, "uniprot_canonical_ac": "P25853-1", "length": 498, "uniprot_id": "BAM5_ARATH", "protein_name": "Beta-amylase 5", "refseq_ac": "NP_567460", "refseq_name": "beta-amylase 5", "gene_name": "BAM5", "gene_names_uniprotkb": "BAM5; AT-BETA-AMY; ATBETA-AMY; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5; dl3650c", "gene_names_refseq": "ARABIDOPSIS THALIANA BETA-AMYLASE; AT-BETA-AMY; ATBETA-AMY; BAM5; BMY1; DL3650C; FCAALL.97; RAM1; REDUCED BETA AMYLASE 1; beta-amylase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25853", "url": "https://www.uniprot.org/uniprotkb/P25853" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLTLEDIADAAQPSGAFKWD", "down_seq": "ETDLKVDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25853", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25853" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser490" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P25853-1.472.472", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HHRHIRNHHHCPYHHRGRRI", "down_seq": "AMNNNISNPTTATVGSSSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr132" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q93WC4-1.139.139", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q93WC4-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q93WC4-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q93WC4-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q93WC4-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.139.139", "start_pos": 139, "end_pos": 139, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HHHCPYHHRGRRITAMNNNI", "down_seq": "NPTTATVGSSSSSSISSRSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser139" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q93WC4-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q93WC4-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q93WC4-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q93WC4-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q93WC4-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q93WC4-1.156.156", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q93WC4-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q93WC4-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CPYHHRGRRITAMNNNISNP", "down_seq": "TATVGSSSSSSISSRSSMYV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr142" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q93WC4-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q93WC4-1.139.139", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q93WC4-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q93WC4-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q93WC4-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q93WC4-1.156.156", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q93WC4-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q93WC4-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PYHHRGRRITAMNNNISNPT", "down_seq": "ATVGSSSSSSISSRSSMYVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr143" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q93WC4-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q93WC4-1.139.139", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q93WC4-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q93WC4-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q93WC4-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q93WC4-1.156.156", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q93WC4-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q93WC4-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HHRGRRITAMNNNISNPTTA", "down_seq": "VGSSSSSSISSRSSMYVKVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr145" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q93WC4-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q93WC4-1.139.139", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q93WC4-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q93WC4-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q93WC4-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q93WC4-1.156.156", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q93WC4-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q93WC4-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRRITAMNNNISNPTTATVG", "down_seq": "SSSSSISSRSSMYVKVKMDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser148" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q93WC4-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q93WC4-1.139.139", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q93WC4-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q93WC4-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q93WC4-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q93WC4-1.156.156", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q93WC4-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q93WC4-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NNISNPTTATVGSSSSSSIS", "down_seq": "RSSMYVKVKMDGVAIARKVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser156" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q93WC4-1.139.139", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q93WC4-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q93WC4-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q93WC4-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q93WC4-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q93WC4-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q93WC4-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISNPTTATVGSSSSSSISSR", "down_seq": "SMYVKVKMDGVAIARKVDIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q93WC4-1.139.139", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q93WC4-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q93WC4-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q93WC4-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q93WC4-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q93WC4-1.156.156", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q93WC4-1.159.159", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93WC4-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "Q93WC4-1", "length": 251, "uniprot_id": "IAA29_ARATH", "protein_name": "Auxin-responsive protein IAA29", "refseq_ac": "NP_567891", "refseq_name": "indole-3-acetic acid inducible 29", "gene_name": "IAA29", "gene_names_uniprotkb": "IAA29; F10M6.1; F10M6.80", "gene_names_refseq": "F10M6.1; IAA29; indole-3-acetic acid inducible 29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WC4", "url": "https://www.uniprot.org/uniprotkb/Q93WC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNPTTATVGSSSSSSISSRS", "down_seq": "MYVKVKMDGVAIARKVDIKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WC4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser159" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "132", "end_pos": "132" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q93WC4-1.139.139", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q93WC4-1.142.142", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q93WC4-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q93WC4-1.145.145", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q93WC4-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q93WC4-1.156.156", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q93WC4-1.158.158", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38832-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "Q38832-1", "length": 228, "uniprot_id": "IAA14_ARATH", "protein_name": "Auxin-responsive protein IAA14", "refseq_ac": "NP_001329483", "refseq_name": "indole-3-acetic acid inducible 14", "gene_name": "IAA14", "gene_names_uniprotkb": "IAA14; DL3315C; FCAALL.254; SLR1; SLR; SOLITARY ROOT; dl3315c", "gene_names_refseq": "DL3315C; FCAALL.254; IAA14; SLR; SOLITARY ROOT; indole-3-acetic acid inducible 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38832", "url": "https://www.uniprot.org/uniprotkb/Q38832" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38832", "url": "https://www.uniprot.org/uniprotkb/Q38832", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "KTFLKDPSKPPAKAQVVGWP", "down_seq": "VRNYRKNVMANQKSGEAEEA", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "In slr1-1; gain of function. Affects auxin-related developmental processes.", "evidence": [ { "database": "UniProtKB", "id": "Q38832", "url": "https://www.uniprot.org/uniprotkb/Q38832" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31582-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "P31582-1", "length": 200, "uniprot_id": "RAF2A_ARATH", "protein_name": "Ras-related protein RABF2a", "refseq_ac": "NP_199326", "refseq_name": "Ras small GTP-binding family protein", "gene_name": "RABF2A; RHA1", "gene_names_uniprotkb": "RABF2A; RHA1; ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "gene_names_refseq": "ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana.", "journal": "The Plant cell", "date": "2007-11", "authors": "Goh Tatsuaki, Uchida Wakana, Arakawa Satoko, Ito Emi, Dainobu Tomoko, Ebine Kazuo, Takeuchi Masaki, Sato Ken, Ueda Takashi, Nakano Akihiko", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610" } ] } ], "crossref": [ { "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KWVQELQAQGNPNMVMALAG", "down_seq": "KADLLDARKVSAEEAEIYAQ", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "I", "comment": "Blocks nucleotide binding; no effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" }, { "database": "PubMed", "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "198", "end_pos": "199" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31582-1.198.199", "start_pos": 198, "end_pos": 199, "uniprot_canonical_ac": "P31582-1", "length": 200, "uniprot_id": "RAF2A_ARATH", "protein_name": "Ras-related protein RABF2a", "refseq_ac": "NP_199326", "refseq_name": "Ras small GTP-binding family protein", "gene_name": "RABF2A; RHA1", "gene_names_uniprotkb": "RABF2A; RHA1; ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "gene_names_refseq": "ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis rab5 homologs rha1 and ara7 localize to the prevacuolar compartment.", "journal": "Plant & cell physiology", "date": "2004-09", "authors": "Lee Gil-Je, Sohn Eun Ju, Lee Myong Hui, Hwang Inhwan", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844" } ] }, { "title": "Rha1, an Arabidopsis Rab5 homolog, plays a critical role in the vacuolar trafficking of soluble cargo proteins.", "journal": "The Plant cell", "date": "2003-05", "authors": "Sohn Eun Ju, Kim Eol Sun, Zhao Min, Kim Soo Jin, Kim Hyeran, Kim Yong-Woo, Lee Yong Jik, Hillmer Stefan, Sohn Uik, Jiang Liwen, Hwang Inhwan", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533" } ] } ], "crossref": [ { "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "CC", "start_aa": "C", "up_seq": "ENPTGMVLPNGPGATAVSSS", "down_seq": "", "mutagenesis": [ { "sequence_org": "CC", "sequence_mut": "SS", "comment": "Loss of targeting to the prevacuolar compartment, but no effect on the vacuolar trafficking.", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" }, { "database": "PubMed", "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844" }, { "database": "PubMed", "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "198", "end_pos": "199" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31582-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "P31582-1", "length": 200, "uniprot_id": "RAF2A_ARATH", "protein_name": "Ras-related protein RABF2a", "refseq_ac": "NP_199326", "refseq_name": "Ras small GTP-binding family protein", "gene_name": "RABF2A; RHA1", "gene_names_uniprotkb": "RABF2A; RHA1; ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "gene_names_refseq": "ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of sorting motifs of At\u03b2Fruct4 for trafficking from the ER to the vacuole through the Golgi and PVC.", "journal": "Traffic (Copenhagen, Denmark)", "date": "2011-12", "authors": "Jung Chanjin, Lee Gil-Je, Jang Mihue, Lee Myunghui, Lee Junho, Kang Hyangju, Sohn Eun Ju, Hwang Inhwan", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "21899678", "url": "https://glygen.org/publication/PubMed/21899678" } ] }, { "title": "The Arabidopsis rab5 homologs rha1 and ara7 localize to the prevacuolar compartment.", "journal": "Plant & cell physiology", "date": "2004-09", "authors": "Lee Gil-Je, Sohn Eun Ju, Lee Myong Hui, Hwang Inhwan", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844" } ] }, { "title": "Rha1, an Arabidopsis Rab5 homolog, plays a critical role in the vacuolar trafficking of soluble cargo proteins.", "journal": "The Plant cell", "date": "2003-05", "authors": "Sohn Eun Ju, Kim Eol Sun, Zhao Min, Kim Soo Jin, Kim Hyeran, Kim Yong-Woo, Lee Yong Jik, Hillmer Stefan, Sohn Uik, Jiang Liwen, Hwang Inhwan", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533" } ] }, { "title": "ENDOSOMAL RAB EFFECTOR WITH PX-DOMAIN, an Interacting Partner of RAB5 GTPases, Regulates Membrane Trafficking to Protein Storage Vacuoles in Arabidopsis.", "journal": "The Plant cell", "date": "2016-06", "authors": "Sakurai Hajime Tajima, Inoue Takeshi, Nakano Akihiko, Ueda Takashi", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "27288222", "url": "https://glygen.org/publication/PubMed/27288222" } ] }, { "title": "VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana.", "journal": "The Plant cell", "date": "2007-11", "authors": "Goh Tatsuaki, Uchida Wakana, Arakawa Satoko, Ito Emi, Dainobu Tomoko, Ebine Kazuo, Takeuchi Masaki, Sato Ken, Ueda Takashi, Nakano Akihiko", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610" } ] } ], "crossref": [ { "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21899678", "url": "https://glygen.org/publication/PubMed/21899678", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27288222", "url": "https://glygen.org/publication/PubMed/27288222", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGNKNINAKLVLLGDVGAGK", "down_seq": "SLVLRFVKDQFVEFQESTIG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "N", "comment": "Dominant negative (GDP-bound form); loss of targeting to the prevacuolar compartment. Inhibits vacuolar trafficking. No effect on the interaction with VPS9A. Loss of interaction with EREX.", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" }, { "database": "PubMed", "id": "21899678", "url": "https://glygen.org/publication/PubMed/21899678" }, { "database": "PubMed", "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844" }, { "database": "PubMed", "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533" }, { "database": "PubMed", "id": "27288222", "url": "https://glygen.org/publication/PubMed/27288222" }, { "database": "PubMed", "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "198", "end_pos": "199" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "P31582-1.42.42", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31582-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "P31582-1", "length": 200, "uniprot_id": "RAF2A_ARATH", "protein_name": "Ras-related protein RABF2a", "refseq_ac": "NP_199326", "refseq_name": "Ras small GTP-binding family protein", "gene_name": "RABF2A; RHA1", "gene_names_uniprotkb": "RABF2A; RHA1; ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "gene_names_refseq": "ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis rab5 homologs rha1 and ara7 localize to the prevacuolar compartment.", "journal": "Plant & cell physiology", "date": "2004-09", "authors": "Lee Gil-Je, Sohn Eun Ju, Lee Myong Hui, Hwang Inhwan", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844" } ] }, { "title": "Rha1, an Arabidopsis Rab5 homolog, plays a critical role in the vacuolar trafficking of soluble cargo proteins.", "journal": "The Plant cell", "date": "2003-05", "authors": "Sohn Eun Ju, Kim Eol Sun, Zhao Min, Kim Soo Jin, Kim Hyeran, Kim Yong-Woo, Lee Yong Jik, Hillmer Stefan, Sohn Uik, Jiang Liwen, Hwang Inhwan", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533" } ] } ], "crossref": [ { "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKSSLVLRFVKDQFVEFQES", "down_seq": "IGAAFFSQTLAVNDATVKFE", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of targeting to the prevacuolar compartment, but no effect on the vacuolar trafficking.", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" }, { "database": "PubMed", "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844" }, { "database": "PubMed", "id": "12724533", "url": "https://glygen.org/publication/PubMed/12724533" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "198", "end_pos": "199" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P31582-1.24.24", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31582-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "P31582-1", "length": 200, "uniprot_id": "RAF2A_ARATH", "protein_name": "Ras-related protein RABF2a", "refseq_ac": "NP_199326", "refseq_name": "Ras small GTP-binding family protein", "gene_name": "RABF2A; RHA1", "gene_names_uniprotkb": "RABF2A; RHA1; ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "gene_names_refseq": "ARABIDOPSIS RAB HOMOLOG F2A; ATRAB-F2A; ATRAB5A; ATRABF2A; K17O22.15; K17O22_15; RAB HOMOLOG F2A; RAB homolog 1; RAB-F2A; RAB5A; RABF2A; RHA1; ROOT HANDEDNESS 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis rab5 homologs rha1 and ara7 localize to the prevacuolar compartment.", "journal": "Plant & cell physiology", "date": "2004-09", "authors": "Lee Gil-Je, Sohn Eun Ju, Lee Myong Hui, Hwang Inhwan", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844" } ] }, { "title": "VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana.", "journal": "The Plant cell", "date": "2007-11", "authors": "Goh Tatsuaki, Uchida Wakana, Arakawa Satoko, Ito Emi, Dainobu Tomoko, Ebine Kazuo, Takeuchi Masaki, Sato Ken, Ueda Takashi, Nakano Akihiko", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" } ], "reference": [ { "type": "PubMed", "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610" } ] } ], "crossref": [ { "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "SQTLAVNDATVKFEIWDTAG", "down_seq": "ERYHSLAPMYYRGAAAAIIV", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "L", "comment": "Constitutively active (GTP-bound form); no effect on the targeting to the prevacuolar compartment. Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" }, { "database": "PubMed", "id": "15509844", "url": "https://glygen.org/publication/PubMed/15509844" }, { "database": "PubMed", "id": "18055610", "url": "https://glygen.org/publication/PubMed/18055610" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "198", "end_pos": "199" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKPVFCGNFEYDARE", "down_seq": "DLERLFRKYGKVERVDMKAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NSSKLMDKVISVEYAVKDDD", "down_seq": "RGNGYSPERRRDRSPDRRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser171" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P92966-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P92966-1.177.177", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MDKVISVEYAVKDDDSRGNG", "down_seq": "SPERRRDRSPDRRRRSPSPY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr176" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P92966-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P92966-1.177.177", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92966-1.192.192", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92966-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKVISVEYAVKDDDSRGNGY", "down_seq": "PERRRDRSPDRRRRSPSPYR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser177" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P92966-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P92966-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P92966-1.192.192", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P92966-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.192.192", "start_pos": 192, "end_pos": 192, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGNGYSPERRRDRSPDRRRR", "down_seq": "PSPYRRERGSPDYGRGASPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser192" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P92966-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P92966-1.177.177", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92966-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92966-1.202.202", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P92966-1.205.205", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92966-1.210.210", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGYSPERRRDRSPDRRRRSP", "down_seq": "PYRRERGSPDYGRGASPVAH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser194" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92966-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P92966-1.177.177", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92966-1.192.192", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92966-1.202.202", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P92966-1.205.205", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92966-1.210.210", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.202.202", "start_pos": 202, "end_pos": 202, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RDRSPDRRRRSPSPYRRERG", "down_seq": "PDYGRGASPVAHKRERTSPD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser202" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P92966-1.192.192", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P92966-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P92966-1.205.205", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92966-1.210.210", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P92966-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92966-1.220.220", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.205.205", "start_pos": 205, "end_pos": 205, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SPDRRRRSPSPYRRERGSPD", "down_seq": "GRGASPVAHKRERTSPDYGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr205" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P92966-1.192.192", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P92966-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P92966-1.202.202", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92966-1.210.210", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P92966-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P92966-1.220.220", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.210.210", "start_pos": 210, "end_pos": 210, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRSPSPYRRERGSPDYGRGA", "down_seq": "PVAHKRERTSPDYGRGRRSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser210" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92966-1.192.192", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P92966-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P92966-1.202.202", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92966-1.205.205", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P92966-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92966-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P92966-1.229.229", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ERGSPDYGRGASPVAHKRER", "down_seq": "SPDYGRGRRSPSPYKRARLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr219" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P92966-1.202.202", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P92966-1.205.205", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P92966-1.210.210", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P92966-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92966-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P92966-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P92966-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P92966-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGSPDYGRGASPVAHKRERT", "down_seq": "PDYGRGRRSPSPYKRARLSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92966-1.202.202", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P92966-1.205.205", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P92966-1.210.210", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P92966-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P92966-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P92966-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P92966-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P92966-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASPVAHKRERTSPDYGRGRR", "down_seq": "PSPYKRARLSPDYKRDDRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P92966-1.210.210", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P92966-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P92966-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92966-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92966-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92966-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.231.231", "start_pos": 231, "end_pos": 231, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVAHKRERTSPDYGRGRRSP", "down_seq": "PYKRARLSPDYKRDDRRRER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser231" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P92966-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P92966-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92966-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92966-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92966-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AHKRERTSPDYGRGRRSPSP", "down_seq": "KRARLSPDYKRDDRRRERVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Tyr233" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P92966-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P92966-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P92966-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92966-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P92966-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSPDYGRGRRSPSPYKRARL", "down_seq": "PDYKRDDRRRERVASPENGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser239" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P92966-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "P92966-1.220.220", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P92966-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P92966-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P92966-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P92966-1.254.254", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.254.254", "start_pos": 254, "end_pos": 254, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.", "journal": "Journal of proteomics", "date": "2009-07-21", "authors": "Wang Zenglan, Dong Gaofeng, Singh Sasha, Steen Hanno, Li Jiaxu", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRARLSPDYKRDDRRRERVA", "down_seq": "PENGAVRNRSPRKGRGESRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser254" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P92966-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92966-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P92966-1.274.274", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VASPENGAVRNRSPRKGRGE", "down_seq": "RSPPPYEKRRESRSPPPYEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser272" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92966-1.254.254", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92966-1.274.274", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P92966-1.284.284", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P92966-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92966-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.274.274", "start_pos": 274, "end_pos": 274, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.", "journal": "Journal of proteomics", "date": "2009-07-21", "authors": "Wang Zenglan, Dong Gaofeng, Singh Sasha, Steen Hanno, Li Jiaxu", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPENGAVRNRSPRKGRGESR", "down_seq": "PPPYEKRRESRSPPPYEKRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19341826", "url": "https://glygen.org/publication/PubMed/19341826" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser274" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P92966-1.254.254", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92966-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92966-1.284.284", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P92966-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P92966-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPRKGRGESRSPPPYEKRRE", "down_seq": "RSPPPYEKRRESRSPPPYEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser284" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P92966-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P92966-1.274.274", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92966-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P92966-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKGRGESRSPPPYEKRRESR", "down_seq": "PPPYEKRRESRSPPPYEKRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser286" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P92966-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P92966-1.274.274", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92966-1.284.284", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92966-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.290.290", "start_pos": 290, "end_pos": 290, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GESRSPPPYEKRRESRSPPP", "down_seq": "EKRRESRSPPPYEKRRERSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr290" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92966-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P92966-1.274.274", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P92966-1.284.284", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P92966-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P92966-1.309.309", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PYEKRRESRSPPPYEKRRER", "down_seq": "RSRSKSSPENGQVESPGQIM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "site_lbl": "Ser309" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P92966-1.290.290", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92966-1.313.313", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P92966-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P92966-1.316.316", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P92966-1.324.324", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92966-1.313.313", "start_pos": 313, "end_pos": 313, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRESRSPPPYEKRRERSRSR", "down_seq": "KSSPENGQVESPGQIMEVEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser313" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P92966-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92966-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P92966-1.316.316", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P92966-1.324.324", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESRSPPPYEKRRERSRSRSK", "down_seq": "SPENGQVESPGQIMEVEAGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser315" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P92966-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92966-1.313.313", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P92966-1.316.316", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P92966-1.324.324", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRSPPPYEKRRERSRSRSKS", "down_seq": "PENGQVESPGQIMEVEAGRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser316" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P92966-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P92966-1.313.313", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P92966-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P92966-1.324.324", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.324.324", "start_pos": 324, "end_pos": 324, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRRERSRSRSKSSPENGQVE", "down_seq": "PGQIMEVEAGRGYDGADSPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser324" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P92966-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P92966-1.313.313", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P92966-1.315.315", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P92966-1.316.316", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P92966-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P92966-1.342.342", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.337.337", "start_pos": 337, "end_pos": 337, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PENGQVESPGQIMEVEAGRG", "down_seq": "DGADSPIRESPSRSPPAEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr337" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P92966-1.324.324", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92966-1.342.342", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P92966-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P92966-1.349.349", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P92966-1.351.351", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VESPGQIMEVEAGRGYDGAD", "down_seq": "PIRESPSRSPPAEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser342" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P92966-1.324.324", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92966-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92966-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P92966-1.349.349", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P92966-1.351.351", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.347.347", "start_pos": 347, "end_pos": 347, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QIMEVEAGRGYDGADSPIRE", "down_seq": "PSRSPPAEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser347" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P92966-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92966-1.342.342", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92966-1.349.349", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P92966-1.351.351", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.349.349", "start_pos": 349, "end_pos": 349, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEVEAGRGYDGADSPIRESP", "down_seq": "RSPPAEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser349" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P92966-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P92966-1.342.342", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92966-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P92966-1.351.351", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.351.351", "start_pos": 351, "end_pos": 351, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.", "journal": "Nucleic acids research", "date": "2006", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Roitinger Elisabeth, Djamei Armin, Hufnagl Thomas, Barta Andrea, Csaszar Edina, Dohnal Ilse, Lecourieux David, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEAGRGYDGADSPIRESPSR", "down_seq": "PPAEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" }, { "database": "PubMed", "id": "16807317", "url": "https://glygen.org/publication/PubMed/16807317" }, { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser351" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P92966-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P92966-1.342.342", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P92966-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P92966-1.349.349", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RVEWTKNDRGGAGRSGGSRR", "down_seq": "SSGLRPSKTLFVINFDAQNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser88" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P92966-1.90.90", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P92966-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EWTKNDRGGAGRSGGSRRSS", "down_seq": "GLRPSKTLFVINFDAQNTRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser90" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P92966-1.88.88", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P92966-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92966-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "P92966-1", "length": 356, "uniprot_id": "SRS41_ARATH", "protein_name": "Serine/arginine-rich splicing factor RS41", "refseq_ac": "NP_001154773", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "RS41", "gene_names_uniprotkb": "RS41; ATRSP41; At-RS41; MSG15.12; MSG15_12; RSP41", "gene_names_refseq": "ARGININE/SERINE-RICH SPLICING FACTOR; ATRSP41; At-RS41; MSG15.12; MSG15_12; RS41; arginine/serine-rich splicing factor 41", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92966", "url": "https://www.uniprot.org/uniprotkb/P92966" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DRGGAGRSGGSRRSSSGLRP", "down_seq": "KTLFVINFDAQNTRTRDLER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92966", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92966" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser95" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "210", "end_pos": "210" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P92966-1.88.88", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P92966-1.90.90", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L746-1.428.428", "start_pos": 428, "end_pos": 428, "uniprot_canonical_ac": "Q8L746-1", "length": 586, "uniprot_id": "NPR3_ARATH", "protein_name": "Regulatory protein NPR3", "refseq_ac": "NP_199324", "refseq_name": "NPR1-like protein 3", "gene_name": "NPR3", "gene_names_uniprotkb": "NPR3; ATNPR3; K17O22.11; K17O22_11; NPR1-like protein 3", "gene_names_refseq": "ATNPR3; K17O22.11; K17O22_11; NPR1-like protein 3; NPR3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L746", "url": "https://www.uniprot.org/uniprotkb/Q8L746" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of salicylic acid perception by Arabidopsis NPR proteins.", "journal": "Nature", "date": "2020-10", "authors": "Wang Wei, Withers John, Li Heng, Zwack Paul J, Rusnac Domni\u021ba-Valeria, Shi Hui, Liu Lijing, Yan Shunping, Hinds Thomas R, Guttman Mikelos, Dong Xinnian, Zheng Ning", "evidence": [ { "database": "UniProtKB", "id": "Q8L746", "url": "https://www.uniprot.org/uniprotkb/Q8L746" } ], "reference": [ { "type": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "crossref": [ { "id": "Q8L746", "url": "https://www.uniprot.org/uniprotkb/Q8L746", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "PMCSISMPEDLQMRLLYLEK", "down_seq": "VGLAQLFFPTEAKVAMDIGN", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Impaired salicylic acid (SA) binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8L746", "url": "https://www.uniprot.org/uniprotkb/Q8L746" }, { "database": "PubMed", "id": "32788727", "url": "https://glygen.org/publication/PubMed/32788727" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "428", "end_pos": "428" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L746-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "Q8L746-1", "length": 586, "uniprot_id": "NPR3_ARATH", "protein_name": "Regulatory protein NPR3", "refseq_ac": "NP_199324", "refseq_name": "NPR1-like protein 3", "gene_name": "NPR3", "gene_names_uniprotkb": "NPR3; ATNPR3; K17O22.11; K17O22_11; NPR1-like protein 3", "gene_names_refseq": "ATNPR3; K17O22.11; K17O22_11; NPR1-like protein 3; NPR3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L746", "url": "https://www.uniprot.org/uniprotkb/Q8L746" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8L746", "url": "https://www.uniprot.org/uniprotkb/Q8L746", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MATLTEPSS", "down_seq": "LSFTSSHFSYGSIGSNHFSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8L746", "url": "https://www.uniprot.org/uniprotkb/Q8L746" } ], "site_lbl": "Ser10" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "428", "end_pos": "428" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9FMF5-1.546.546", "start_pos": 546, "end_pos": 546, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis NPH3: A NPH1 photoreceptor-interacting protein essential for phototropism.", "journal": "Science (New York, N.Y.)", "date": "1999-10-29", "authors": "Motchoulski A, Liscum E", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "10542152", "url": "https://glygen.org/publication/PubMed/10542152" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10542152", "url": "https://glygen.org/publication/PubMed/10542152", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KFQVLAEALPESARTCDDGL", "down_seq": "RAIDSYLKAHPTLSEHERKR", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "", "comment": "In nph3-2; loss of hypocotyl phototropism.", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "PubMed", "id": "10542152", "url": "https://glygen.org/publication/PubMed/10542152" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "PubMed", "id": "10542152", "url": "https://glygen.org/publication/PubMed/10542152" }, { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "site_lbl": "Tyr546" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AWKACSNPKGIRWAYTGKAP", "down_seq": "PSTTNFAGSSPRWNESKDSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser213" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9FMF5-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9FMF5-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KACSNPKGIRWAYTGKAPSP", "down_seq": "TTNFAGSSPRWNESKDSSFY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser215" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9FMF5-1.213.213", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9FMF5-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.216.216", "start_pos": 216, "end_pos": 216, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ACSNPKGIRWAYTGKAPSPS", "down_seq": "TNFAGSSPRWNESKDSSFYC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr216" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9FMF5-1.213.213", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9FMF5-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CSNPKGIRWAYTGKAPSPST", "down_seq": "NFAGSSPRWNESKDSSFYCS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr217" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9FMF5-1.213.213", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9FMF5-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9FMF5-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9FMF5-1.237.237", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GIRWAYTGKAPSPSTTNFAG", "down_seq": "SPRWNESKDSSFYCSPSRNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser222" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9FMF5-1.213.213", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9FMF5-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9FMF5-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9FMF5-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9FMF5-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRWAYTGKAPSPSTTNFAGS", "down_seq": "PRWNESKDSSFYCSPSRNTN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser223" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9FMF5-1.213.213", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9FMF5-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9FMF5-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9FMF5-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9FMF5-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSPSTTNFAGSSPRWNESKD", "down_seq": "SFYCSPSRNTNSQPVPPDWW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9FMF5-1.213.213", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q9FMF5-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9FMF5-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9FMF5-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9FMF5-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPSTTNFAGSSPRWNESKDS", "down_seq": "FYCSPSRNTNSQPVPPDWWF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser233" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9FMF5-1.213.213", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9FMF5-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q9FMF5-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FMF5-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9FMF5-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.235.235", "start_pos": 235, "end_pos": 235, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "STTNFAGSSPRWNESKDSSF", "down_seq": "CSPSRNTNSQPVPPDWWFED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr235" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9FMF5-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q9FMF5-1.216.216", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FMF5-1.237.237", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FMF5-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TNFAGSSPRWNESKDSSFYC", "down_seq": "PSRNTNSQPVPPDWWFEDVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9FMF5-1.217.217", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FMF5-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FAGSSPRWNESKDSSFYCSP", "down_seq": "RNTNSQPVPPDWWFEDVSIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser239" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9FMF5-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9FMF5-1.223.223", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9FMF5-1.232.232", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9FMF5-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9FMF5-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9FMF5-1.237.237", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.324.324", "start_pos": 324, "end_pos": 324, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IAPAMSSAIGGGLGLGGDEM", "down_seq": "ISCGSNSSGGSSGPDWKGGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "site_lbl": "Ser324" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9FMF5-1.463.463", "start_pos": 463, "end_pos": 463, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TMYDVDLVQRLLEHFLVQEQ", "down_seq": "EGSSPSRMSPSPSQSMYADI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ], "site_lbl": "Thr463" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9FMF5-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FMF5-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9FMF5-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9FMF5-1.472.472", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9FMF5-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9FMF5-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.466.466", "start_pos": 466, "end_pos": 466, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVDLVQRLLEHFLVQEQTEG", "down_seq": "SPSRMSPSPSQSMYADIPRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser466" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9FMF5-1.463.463", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9FMF5-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9FMF5-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9FMF5-1.472.472", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9FMF5-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9FMF5-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.467.467", "start_pos": 467, "end_pos": 467, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" }, { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDLVQRLLEHFLVQEQTEGS", "down_seq": "PSRMSPSPSQSMYADIPRGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser467" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9FMF5-1.463.463", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9FMF5-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FMF5-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9FMF5-1.472.472", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9FMF5-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9FMF5-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.469.469", "start_pos": 469, "end_pos": 469, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVQRLLEHFLVQEQTEGSSP", "down_seq": "RMSPSPSQSMYADIPRGNNN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser469" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9FMF5-1.463.463", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9FMF5-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9FMF5-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9FMF5-1.472.472", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9FMF5-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9FMF5-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.472.472", "start_pos": 472, "end_pos": 472, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLLEHFLVQEQTEGSSPSRM", "down_seq": "PSPSQSMYADIPRGNNNNGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser472" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9FMF5-1.463.463", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9FMF5-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9FMF5-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9FMF5-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FMF5-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FMF5-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.474.474", "start_pos": 474, "end_pos": 474, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEHFLVQEQTEGSSPSRMSP", "down_seq": "PSQSMYADIPRGNNNNGGGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser474" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9FMF5-1.463.463", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9FMF5-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9FMF5-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9FMF5-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9FMF5-1.472.472", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FMF5-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.476.476", "start_pos": 476, "end_pos": 476, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HFLVQEQTEGSSPSRMSPSP", "down_seq": "QSMYADIPRGNNNNGGGGGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser476" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q9FMF5-1.463.463", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9FMF5-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9FMF5-1.467.467", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9FMF5-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9FMF5-1.472.472", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9FMF5-1.474.474", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.722.722", "start_pos": 722, "end_pos": 722, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGWKKLSKLTKMSGQESHDI", "down_seq": "SGGEQAGVDHPPPRKPRRWR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ], "site_lbl": "Ser722" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9FMF5-1.723.723", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.723.723", "start_pos": 723, "end_pos": 723, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5-1" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GWKKLSKLTKMSGQESHDIS", "down_seq": "GGEQAGVDHPPPRKPRRWRN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser723" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9FMF5-1.722.722", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.744.744", "start_pos": 744, "end_pos": 744, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGEQAGVDHPPPRKPRRWRN", "down_seq": "IS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser744" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FMF5-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "Q9FMF5-1", "length": 746, "uniprot_id": "RPT3_ARATH", "protein_name": "Root phototropism protein 3", "refseq_ac": "NP_568989", "refseq_name": "Phototropic-responsive NPH3 family protein", "gene_name": "NPH3; RPT3", "gene_names_uniprotkb": "NPH3; RPT3; JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "gene_names_refseq": "JK218; MSJ1.17; MSJ1_17; NON-PHOTOTROPIC HYPOCOTYL 3; NPH3; ROOT PHOTOTROPISM 3; RPT3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FMF5", "url": "https://www.uniprot.org/uniprotkb/Q9FMF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The phosphorylation status of NONPHOTOTROPIC HYPOCOTYL3 affects phot2-dependent phototropism in Arabidopsis.", "journal": "Plant signaling & behavior", "date": "2022-12-31", "authors": "Kimura Taro, Haga Ken, Sakai Tatsuya", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" } ], "reference": [ { "type": "PubMed", "id": "35068333", "url": "https://glygen.org/publication/PubMed/35068333" } ] } ], "crossref": [ { "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "35068333", "url": "https://glygen.org/publication/PubMed/35068333", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MMWESE", "down_seq": "DGGVGVGGGGGREYGDGVLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FMF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FMF5" }, { "database": "PubMed", "id": "35068333", "url": "https://glygen.org/publication/PubMed/35068333" } ], "site_lbl": "Ser7" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "546", "end_pos": "546" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P46011-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "P46011-1", "length": 355, "uniprot_id": "NRL4_ARATH", "protein_name": "Bifunctional nitrilase/nitrile hydratase NIT4", "refseq_ac": "NP_197622", "refseq_name": "nitrilase 4", "gene_name": "NIT4", "gene_names_uniprotkb": "NIT4; AtNIT4; MWD9.8; NITRILASE 4; T6G21.6; nitrilase 4", "gene_names_refseq": "AtNIT4; NIT4; NITRILASE 4; T6G21.6; nitrilase 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46011", "url": "https://www.uniprot.org/uniprotkb/P46011" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase.", "journal": "The Journal of biological chemistry", "date": "2001-01-26", "authors": "Piotrowski M, Sch\u00f6nfelder S, Weiler E W", "evidence": [ { "database": "UniProtKB", "id": "P46011", "url": "https://www.uniprot.org/uniprotkb/P46011" } ], "reference": [ { "type": "PubMed", "id": "11060302", "url": "https://glygen.org/publication/PubMed/11060302" } ] } ], "crossref": [ { "id": "P46011", "url": "https://www.uniprot.org/uniprotkb/P46011", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11060302", "url": "https://glygen.org/publication/PubMed/11060302", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "GDGSTIPVFDTPIGKIGAAI", "down_seq": "WENRMPSLRTAMYAKGIEIY", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of nitrilase activity and 95% reduction of the nitrile hydratase activity.", "evidence": [ { "database": "UniProtKB", "id": "P46011", "url": "https://www.uniprot.org/uniprotkb/P46011" }, { "database": "PubMed", "id": "11060302", "url": "https://glygen.org/publication/PubMed/11060302" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "197", "end_pos": "197" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "REFFHMPVNAKETYSNSPRT", "down_seq": "EGYGSRLGVEKGASLDWSDY", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Reduces enzymatic activity 8-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9FFF6-1.131.131", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9FFF6-1.142.142", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "VNAKETYSNSPRTYEGYGSR", "down_seq": "GVEKGASLDWSDYYFLHLLP", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Reduces enzymatic activity 5-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9FFF6-1.131.131", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9FFF6-1.135.135", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9FFF6-1.157.157", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.157.157", "start_pos": 157, "end_pos": 157, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "GYGSRLGVEKGASLDWSDYY", "down_seq": "LHLLPHHLKDFNKWPSFPPT", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Loss of enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] }, { "sequence_org": "F", "sequence_mut": "Y", "comment": "Increases enzymatic activity 1.2-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9FFF6-1.142.142", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "GLKEDKFQEAFGGENIGACL", "down_seq": "VNYYPKCPRPELALGLSPHS", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q9FFF6-1.244.244", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.244.244", "start_pos": 244, "end_pos": 244, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "LRVNYYPKCPRPELALGLSP", "down_seq": "SDPGGMTILLPDDQVFGLQV", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9FFF6-1.225.225", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FFF6-1.246.246", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "VNYYPKCPRPELALGLSPHS", "down_seq": "PGGMTILLPDDQVFGLQVRK", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Reduces enzymatic activity 4-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9FFF6-1.244.244", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.317.317", "start_pos": 317, "end_pos": 317, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "KSVEHRVIVNSDKERVSLAF", "down_seq": "YNPKSDIPIQPLQELVSTHN", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "No effect on enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] }, { "sequence_org": "F", "sequence_mut": "Y", "comment": "Reduces enzymatic activity 2.5-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "IQPLQELVSTHNPPLYPPMT", "down_seq": "DQYRLFIRTQGPQGKSHVES", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduces enzymatic activity 5-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] }, { "sequence_org": "F", "sequence_mut": "Y", "comment": "No effect on enzymatic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9FFF6-1.350.350", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9FFF6-1.353.353", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9FFF6-1.354.354", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9FFF6-1.366.366", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.350.350", "start_pos": 350, "end_pos": 350, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "QELVSTHNPPLYPPMTFDQY", "down_seq": "LFIRTQGPQGKSHVESHISP", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces enzymatic activity 2-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9FFF6-1.346.346", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9FFF6-1.353.353", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FFF6-1.354.354", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9FFF6-1.366.366", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9FFF6-1.369.369", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "VSTHNPPLYPPMTFDQYRLF", "down_seq": "RTQGPQGKSHVESHISPR", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "A", "comment": "Reduces enzymatic activity 4-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9FFF6-1.346.346", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9FFF6-1.350.350", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9FFF6-1.354.354", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9FFF6-1.366.366", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9FFF6-1.369.369", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure-guided analysis of Arabidopsis JASMONATE-INDUCED OXYGENASE (JOX) 2 reveals key residues for recognition of jasmonic acid substrate by plant JOXs.", "journal": "Molecular plant", "date": "2021-05-03", "authors": "Zhang Xin, Wang Dongli, Elberse Joyce, Qi Linlu, Shi Wei, Peng You-Liang, Schuurink Robert C, Van den Ackerveken Guido, Liu Junfeng", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "STHNPPLYPPMTFDQYRLFI", "down_seq": "TQGPQGKSHVESHISPR", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces enzymatic activity 2.5-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" }, { "database": "PubMed", "id": "33516967", "url": "https://glygen.org/publication/PubMed/33516967" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9FFF6-1.346.346", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9FFF6-1.350.350", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9FFF6-1.353.353", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9FFF6-1.366.366", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9FFF6-1.369.369", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.131.131", "start_pos": 131, "end_pos": 131, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RENWREFFHMPVNAKETYSN", "down_seq": "PRTYEGYGSRLGVEKGASLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser131" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9FFF6-1.135.135", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9FFF6-1.142.142", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNKNKIDVKIETKKG", "down_seq": "MDEWPEPIVRVQSLAESNLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q9FFF6-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KIETKKGSMDEWPEPIVRVQ", "down_seq": "LAESNLSSLPDRYIKPASLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser29" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q9FFF6-1.16.16", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.366.366", "start_pos": 366, "end_pos": 366, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FDQYRLFIRTQGPQGKSHVE", "down_seq": "HISPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser366" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9FFF6-1.346.346", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9FFF6-1.350.350", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9FFF6-1.353.353", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9FFF6-1.354.354", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9FFF6-1.369.369", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFF6-1.369.369", "start_pos": 369, "end_pos": 369, "uniprot_canonical_ac": "Q9FFF6-1", "length": 371, "uniprot_id": "JOX2_ARATH", "protein_name": "Jasmonate-induced oxygenase 2", "refseq_ac": "NP_196179", "refseq_name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "gene_name": "JOX2", "gene_names_uniprotkb": "JOX2; JAO2; MOP10.14; MOP10_14", "gene_names_refseq": "MOP10.14; MOP10_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFF6", "url": "https://www.uniprot.org/uniprotkb/Q9FFF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YRLFIRTQGPQGKSHVESHI", "down_seq": "PR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFF6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser369" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "135", "end_pos": "135" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "317", "end_pos": "317" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "369", "end_pos": "369" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9FFF6-1.350.350", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9FFF6-1.353.353", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9FFF6-1.354.354", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9FFF6-1.366.366", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82481-1.202.202", "start_pos": 202, "end_pos": 202, "uniprot_canonical_ac": "O82481-1", "length": 215, "uniprot_id": "RAC10_ARATH", "protein_name": "Rac-like GTP-binding protein ARAC10", "refseq_ac": "", "refseq_name": "", "gene_name": "ARAC10; RAC10", "gene_names_uniprotkb": "ARAC10; RAC10; ARAC10; ATRAC10; ATROP11; MQB2.180; MQB2.20; MQB2_180; RAC-like 10; ROP11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82481", "url": "https://www.uniprot.org/uniprotkb/O82481" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A cell-specific, prenylation-independent mechanism regulates targeting of type II RACs.", "journal": "The Plant cell", "date": "2002-10", "authors": "Lavy Meirav, Bracha-Drori Keren, Sternberg Hasana, Yalovsky Shaul", "evidence": [ { "database": "UniProtKB", "id": "O82481", "url": "https://www.uniprot.org/uniprotkb/O82481" } ], "reference": [ { "type": "PubMed", "id": "12368496", "url": "https://glygen.org/publication/PubMed/12368496" } ] } ], "crossref": [ { "id": "O82481", "url": "https://www.uniprot.org/uniprotkb/O82481", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12368496", "url": "https://glygen.org/publication/PubMed/12368496", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "PLVKQKEKTKKKKKQKSNHG", "down_seq": "LSNVLCGRIVTRH", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Affects the membrane location.", "evidence": [ { "database": "UniProtKB", "id": "O82481", "url": "https://www.uniprot.org/uniprotkb/O82481" }, { "database": "PubMed", "id": "12368496", "url": "https://glygen.org/publication/PubMed/12368496" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "202" }, { "start_pos": "208", "end_pos": "208" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O82481-1.208.208", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82481-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "O82481-1", "length": 215, "uniprot_id": "RAC10_ARATH", "protein_name": "Rac-like GTP-binding protein ARAC10", "refseq_ac": "", "refseq_name": "", "gene_name": "ARAC10; RAC10", "gene_names_uniprotkb": "ARAC10; RAC10; ARAC10; ATRAC10; ATROP11; MQB2.180; MQB2.20; MQB2_180; RAC-like 10; ROP11", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82481", "url": "https://www.uniprot.org/uniprotkb/O82481" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A cell-specific, prenylation-independent mechanism regulates targeting of type II RACs.", "journal": "The Plant cell", "date": "2002-10", "authors": "Lavy Meirav, Bracha-Drori Keren, Sternberg Hasana, Yalovsky Shaul", "evidence": [ { "database": "UniProtKB", "id": "O82481", "url": "https://www.uniprot.org/uniprotkb/O82481" } ], "reference": [ { "type": "PubMed", "id": "12368496", "url": "https://glygen.org/publication/PubMed/12368496" } ] } ], "crossref": [ { "id": "O82481", "url": "https://www.uniprot.org/uniprotkb/O82481", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12368496", "url": "https://glygen.org/publication/PubMed/12368496", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "EKTKKKKKQKSNHGCLSNVL", "down_seq": "GRIVTRH", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Affects the membrane location.", "evidence": [ { "database": "UniProtKB", "id": "O82481", "url": "https://www.uniprot.org/uniprotkb/O82481" }, { "database": "PubMed", "id": "12368496", "url": "https://glygen.org/publication/PubMed/12368496" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "202" }, { "start_pos": "208", "end_pos": "208" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O82481-1.202.202", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FGV1-1.609.609", "start_pos": 609, "end_pos": 609, "uniprot_canonical_ac": "Q9FGV1-1", "length": 811, "uniprot_id": "ARFH_ARATH", "protein_name": "Auxin response factor 8", "refseq_ac": "NP_001078672", "refseq_name": "auxin response factor 8", "gene_name": "ARF8", "gene_names_uniprotkb": "ARF8; ATARF8; FWF; K15O15.1; K15O15.5; K15O15_1; auxin response factor 8", "gene_names_refseq": "ARF8; ATARF8; K15O15.1; K15O15_1; auxin response factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGV1", "url": "https://www.uniprot.org/uniprotkb/Q9FGV1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9FGV1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FGV1" }, { "database": "O-GlcNAc Atlas", "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ITGQSVLPEQLTTEGWSPKA", "down_seq": "NTFSEPLSLPQAYPGKSLAL", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser609", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FGV1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "609", "end_pos": "609" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "617", "end_pos": "617" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9FGV1-1.611.611", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FGV1-1.613.613", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9FGV1-1.617.617", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FGV1-1.611.611", "start_pos": 611, "end_pos": 611, "uniprot_canonical_ac": "Q9FGV1-1", "length": 811, "uniprot_id": "ARFH_ARATH", "protein_name": "Auxin response factor 8", "refseq_ac": "NP_001078672", "refseq_name": "auxin response factor 8", "gene_name": "ARF8", "gene_names_uniprotkb": "ARF8; ATARF8; FWF; K15O15.1; K15O15.5; K15O15_1; auxin response factor 8", "gene_names_refseq": "ARF8; ATARF8; K15O15.1; K15O15_1; auxin response factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGV1", "url": "https://www.uniprot.org/uniprotkb/Q9FGV1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9FGV1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FGV1" }, { "database": "O-GlcNAc Atlas", "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GQSVLPEQLTTEGWSPKASN", "down_seq": "FSEPLSLPQAYPGKSLALEP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr611", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FGV1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "609", "end_pos": "609" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "617", "end_pos": "617" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9FGV1-1.609.609", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9FGV1-1.613.613", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9FGV1-1.617.617", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FGV1-1.613.613", "start_pos": 613, "end_pos": 613, "uniprot_canonical_ac": "Q9FGV1-1", "length": 811, "uniprot_id": "ARFH_ARATH", "protein_name": "Auxin response factor 8", "refseq_ac": "NP_001078672", "refseq_name": "auxin response factor 8", "gene_name": "ARF8", "gene_names_uniprotkb": "ARF8; ATARF8; FWF; K15O15.1; K15O15.5; K15O15_1; auxin response factor 8", "gene_names_refseq": "ARF8; ATARF8; K15O15.1; K15O15_1; auxin response factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGV1", "url": "https://www.uniprot.org/uniprotkb/Q9FGV1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9FGV1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FGV1" }, { "database": "O-GlcNAc Atlas", "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVLPEQLTTEGWSPKASNTF", "down_seq": "EPLSLPQAYPGKSLALEPGN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser613", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FGV1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "609", "end_pos": "609" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "617", "end_pos": "617" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9FGV1-1.609.609", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9FGV1-1.611.611", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9FGV1-1.617.617", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FGV1-1.617.617", "start_pos": 617, "end_pos": 617, "uniprot_canonical_ac": "Q9FGV1-1", "length": 811, "uniprot_id": "ARFH_ARATH", "protein_name": "Auxin response factor 8", "refseq_ac": "NP_001078672", "refseq_name": "auxin response factor 8", "gene_name": "ARF8", "gene_names_uniprotkb": "ARF8; ATARF8; FWF; K15O15.1; K15O15.5; K15O15_1; auxin response factor 8", "gene_names_refseq": "ARF8; ATARF8; K15O15.1; K15O15_1; auxin response factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGV1", "url": "https://www.uniprot.org/uniprotkb/Q9FGV1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9FGV1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FGV1" }, { "database": "O-GlcNAc Atlas", "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EQLTTEGWSPKASNTFSEPL", "down_seq": "LPQAYPGKSLALEPGNPQNP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser617", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FGV1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "609", "end_pos": "609" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "617", "end_pos": "617" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9FGV1-1.609.609", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9FGV1-1.611.611", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9FGV1-1.613.613", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FGV1-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9FGV1-1", "length": 811, "uniprot_id": "ARFH_ARATH", "protein_name": "Auxin response factor 8", "refseq_ac": "NP_001078672", "refseq_name": "auxin response factor 8", "gene_name": "ARF8", "gene_names_uniprotkb": "ARF8; ATARF8; FWF; K15O15.1; K15O15.5; K15O15_1; auxin response factor 8", "gene_names_refseq": "ARF8; ATARF8; K15O15.1; K15O15_1; auxin response factor 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FGV1", "url": "https://www.uniprot.org/uniprotkb/Q9FGV1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9FGV1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FGV1" }, { "database": "O-GlcNAc Atlas", "id": "Q9FGV1", "url": "https://oglcnac.org/atlas/detail/Q9FGV1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FGV1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FGV1", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9FGV1", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9FGV1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "609", "end_pos": "609" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "617", "end_pos": "617" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P34881-1.1101.1101", "start_pos": 1101, "end_pos": 1101, "uniprot_canonical_ac": "P34881-1", "length": 1534, "uniprot_id": "DNMT1_ARATH", "protein_name": "DNA (cytosine-5)-methyltransferase 1", "refseq_ac": "NP_199727", "refseq_name": "methyltransferase 1", "gene_name": "DMT1; MET1", "gene_names_uniprotkb": "DMT1; MET1; ATHIM; DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; K21P3.3; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "gene_names_refseq": "DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis MET1 cytosine methyltransferase mutants.", "journal": "Genetics", "date": "2003-03", "authors": "Kankel Mark W, Ramsey Douglas E, Stokes Trevor L, Flowers Susan K, Haag Jeremy R, Jeddeloh Jeffrey A, Riddle Nicole C, Verbsky Michelle L, Richards Eric J", "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "reference": [ { "type": "PubMed", "id": "12663548", "url": "https://glygen.org/publication/PubMed/12663548" } ] } ], "crossref": [ { "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12663548", "url": "https://glygen.org/publication/PubMed/12663548", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "IVKPVEPPKEIRLATLDIFA", "down_seq": "CGGLSHGLKKAGVSDAKWAI", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "In met1-2/ddm2-2; reduced activity.", "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" }, { "database": "PubMed", "id": "12663548", "url": "https://glygen.org/publication/PubMed/12663548" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "1272", "end_pos": "1272" }, { "start_pos": "1300", "end_pos": "1300" }, { "start_pos": "1465", "end_pos": "1465" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "525", "end_pos": "525" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P34881-1.1272.1272", "start_pos": 1272, "end_pos": 1272, "uniprot_canonical_ac": "P34881-1", "length": 1534, "uniprot_id": "DNMT1_ARATH", "protein_name": "DNA (cytosine-5)-methyltransferase 1", "refseq_ac": "NP_199727", "refseq_name": "methyltransferase 1", "gene_name": "DMT1; MET1", "gene_names_uniprotkb": "DMT1; MET1; ATHIM; DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; K21P3.3; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "gene_names_refseq": "DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase.", "journal": "Developmental cell", "date": "2003-12", "authors": "Xiao Wenyan, Gehring Mary, Choi Yeonhee, Margossian Linda, Pu Hong, Harada John J, Goldberg Robert B, Pennell Roger I, Fischer Robert L", "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "reference": [ { "type": "PubMed", "id": "14667411", "url": "https://glygen.org/publication/PubMed/14667411" } ] } ], "crossref": [ { "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14667411", "url": "https://glygen.org/publication/PubMed/14667411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "FQLTLASLLEMGYQVRFGIL", "down_seq": "AGAYGVSQSRKRAFIWAAAP", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In met1-5; reduced activity.", "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" }, { "database": "PubMed", "id": "14667411", "url": "https://glygen.org/publication/PubMed/14667411" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "1272", "end_pos": "1272" }, { "start_pos": "1300", "end_pos": "1300" }, { "start_pos": "1465", "end_pos": "1465" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "525", "end_pos": "525" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P34881-1.1300.1300", "start_pos": 1300, "end_pos": 1300, "uniprot_canonical_ac": "P34881-1", "length": 1534, "uniprot_id": "DNMT1_ARATH", "protein_name": "DNA (cytosine-5)-methyltransferase 1", "refseq_ac": "NP_199727", "refseq_name": "methyltransferase 1", "gene_name": "DMT1; MET1", "gene_names_uniprotkb": "DMT1; MET1; ATHIM; DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; K21P3.3; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "gene_names_refseq": "DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis MET1 cytosine methyltransferase mutants.", "journal": "Genetics", "date": "2003-03", "authors": "Kankel Mark W, Ramsey Douglas E, Stokes Trevor L, Flowers Susan K, Haag Jeremy R, Jeddeloh Jeffrey A, Riddle Nicole C, Verbsky Michelle L, Richards Eric J", "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "reference": [ { "type": "PubMed", "id": "12663548", "url": "https://glygen.org/publication/PubMed/12663548" } ] } ], "crossref": [ { "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12663548", "url": "https://glygen.org/publication/PubMed/12663548", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "QSRKRAFIWAAAPEEVLPEW", "down_seq": "EPMHVFGVPKLKISLSQGLH", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "In met1-1/ddm2-1; reduced activity.", "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" }, { "database": "PubMed", "id": "12663548", "url": "https://glygen.org/publication/PubMed/12663548" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "1272", "end_pos": "1272" }, { "start_pos": "1300", "end_pos": "1300" }, { "start_pos": "1465", "end_pos": "1465" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "525", "end_pos": "525" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P34881-1.1465.1465", "start_pos": 1465, "end_pos": 1465, "uniprot_canonical_ac": "P34881-1", "length": 1534, "uniprot_id": "DNMT1_ARATH", "protein_name": "DNA (cytosine-5)-methyltransferase 1", "refseq_ac": "NP_199727", "refseq_name": "methyltransferase 1", "gene_name": "DMT1; MET1", "gene_names_uniprotkb": "DMT1; MET1; ATHIM; DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; K21P3.3; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "gene_names_refseq": "DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase.", "journal": "Developmental cell", "date": "2003-12", "authors": "Xiao Wenyan, Gehring Mary, Choi Yeonhee, Margossian Linda, Pu Hong, Harada John J, Goldberg Robert B, Pennell Roger I, Fischer Robert L", "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "reference": [ { "type": "PubMed", "id": "14667411", "url": "https://glygen.org/publication/PubMed/14667411" } ] } ], "crossref": [ { "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14667411", "url": "https://glygen.org/publication/PubMed/14667411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LDWQGNFPTSVTDPQPMGKV", "down_seq": "MCFHPEQHRILTVRECARSQ", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In met1-7; reduced activity.", "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" }, { "database": "PubMed", "id": "14667411", "url": "https://glygen.org/publication/PubMed/14667411" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "1272", "end_pos": "1272" }, { "start_pos": "1300", "end_pos": "1300" }, { "start_pos": "1465", "end_pos": "1465" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "525", "end_pos": "525" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P34881-1.525.525", "start_pos": 525, "end_pos": 525, "uniprot_canonical_ac": "P34881-1", "length": 1534, "uniprot_id": "DNMT1_ARATH", "protein_name": "DNA (cytosine-5)-methyltransferase 1", "refseq_ac": "NP_199727", "refseq_name": "methyltransferase 1", "gene_name": "DMT1; MET1", "gene_names_uniprotkb": "DMT1; MET1; ATHIM; DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; K21P3.3; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "gene_names_refseq": "DDM2; DECREASED DNA METHYLATION 2; DMT01; DMT1; DNA METHYLTRANSFERASE 01; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE; MET1; MET2; METHYLTRANSFERASE 2; METHYLTRANSFERASE I; METI; methyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P34881", "url": "https://www.uniprot.org/uniprotkb/P34881" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P34881", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34881", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARVGISILTFLRVESRVARL", "down_seq": "FADVTKRLSGLQANDKAYIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P34881", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P34881" } ], "site_lbl": "Ser525" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "1272", "end_pos": "1272" }, { "start_pos": "1300", "end_pos": "1300" }, { "start_pos": "1465", "end_pos": "1465" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "525", "end_pos": "525" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P20431-1.701.701", "start_pos": 701, "end_pos": 701, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AILNDGTIMTISKDRVKPSP", "down_seq": "PDSWKLKEIFATGVVLGGYM", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr701", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P20431-1.947.947", "start_pos": 947, "end_pos": 947, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Binding of 14-3-3 protein to the plasma membrane H(+)-ATPase AHA2 involves the three C-terminal residues Tyr(946)-Thr-Val and requires phosphorylation of Thr(947).", "journal": "The Journal of biological chemistry", "date": "1999-12-17", "authors": "Fuglsang A T, Visconti S, Drumm K, Jahn T, Stensballe A, Mattei B, Jensen O N, Aducci P, Palmgren M G", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KGHVESVVKLKGLDIETAGH", "down_seq": "TV", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Impaired fusicoccin- (FC) dependent activation by 14-3-3 protein.", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "PubMed", "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Tyr947" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P20431-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P20431-1.948.948", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P20431-1.949.949", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P20431-1.948.948", "start_pos": 948, "end_pos": 948, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Binding of 14-3-3 protein to the plasma membrane H(+)-ATPase AHA2 involves the three C-terminal residues Tyr(946)-Thr-Val and requires phosphorylation of Thr(947).", "journal": "The Journal of biological chemistry", "date": "1999-12-17", "authors": "Fuglsang A T, Visconti S, Drumm K, Jahn T, Stensballe A, Mattei B, Jensen O N, Aducci P, Palmgren M G", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GHVESVVKLKGLDIETAGHY", "down_seq": "", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Impaired fusicoccin- (FC) dependent activation by 14-3-3 protein.", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "PubMed", "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "PubMed", "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr948" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P20431-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P20431-1.947.947", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P20431-1.949.949", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P20431-1.949.949", "start_pos": 949, "end_pos": 949, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Binding of 14-3-3 protein to the plasma membrane H(+)-ATPase AHA2 involves the three C-terminal residues Tyr(946)-Thr-Val and requires phosphorylation of Thr(947).", "journal": "The Journal of biological chemistry", "date": "1999-12-17", "authors": "Fuglsang A T, Visconti S, Drumm K, Jahn T, Stensballe A, Mattei B, Jensen O N, Aducci P, Palmgren M G", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986" } ] } ], "crossref": [ { "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "HVESVVKLKGLDIETAGHYT", "down_seq": "", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Impaired fusicoccin- (FC) dependent activation by 14-3-3 protein.", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "PubMed", "id": "10593986", "url": "https://glygen.org/publication/PubMed/10593986" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P20431-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P20431-1.947.947", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P20431-1.948.948", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P20431-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VTMAIGSHKLSQQGAITKRM", "down_seq": "AIEEMAGMDVLCSDKTGTLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr316" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "P20431-1.329.329", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P20431-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GAITKRMTAIEEMAGMDVLC", "down_seq": "DKTGTLTLNKLSVDKNLIEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser329" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P20431-1.316.316", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P20431-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MA", "down_seq": "GLEDIVNENVDLEKIPIEEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "site_lbl": "Ser3" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P20431-1.882.882", "start_pos": 882, "end_pos": 882, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TTKQNYGIEEREAQWAHAQR", "down_seq": "LHGLQNTETANVVPERGGYR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr882" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P20431-1.932.932", "start_pos": 932, "end_pos": 932, "uniprot_canonical_ac": "P20431-1", "length": 949, "uniprot_id": "PMA3_ARATH", "protein_name": "ATPase 3, plasma membrane-type", "refseq_ac": "NP_001190559", "refseq_name": "H[+]-ATPase 3", "gene_name": "AHA3; HA3", "gene_names_uniprotkb": "AHA3; HA3; AHA3; ATAHA3; H(+)-ATPase 3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "gene_names_refseq": "AHA3; ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE; ATAHA3; H(+)-ATPase 3; HA3; MJB24.16; MJB24_16; P-TYPE H(+)-ATPASE ISOFORM 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRRAEIARLRELHTLKGHVE", "down_seq": "VVKLKGLDIETAGHYTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P20431", "url": "https://www.uniprot.org/uniprotkb/P20431" }, { "database": "iPTMnet", "id": "P20431", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P20431" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser932" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "701", "end_pos": "701" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "949", "end_pos": "949" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "316", "end_pos": "316" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "882", "end_pos": "882" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "P20431-1.947.947", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P20431-1.948.948", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P20431-1.949.949", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.", "journal": "Cell host & microbe", "date": "2014-11-12", "authors": "Monaghan Jacqueline, Matschi Susanne, Shorinola Oluwaseyi, Rovenich Hanna, Matei Alexandra, Segonzac C\u00e9cile, Malinovsky Frederikke Gro, Rathjen John P, MacLean Dan, Romeis Tina, Zipfel Cyril", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792" } ] }, { "title": "Catalytically inactive subgroup VIII receptor-like cytoplasmic kinases regulate the immune-triggered oxidative burst in Arabidopsis thaliana.", "journal": "Journal of experimental botany", "date": "2025-04-09", "authors": "Gon\u00e7alves Dias M\u00e1rcia, Dharmasena Thakshila, Gonzalez-Ferrer Carmen, Maika Jan Eric, Miguel Virginia Natali, Dou Ruoqi, Rodriguez Gallo Maria Camila, Bredow Melissa, Siegel Kristen Rose, Uhrig R Glen, Simon R\u00fcdiger, Monaghan Jacqueline", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "39673241", "url": "https://glygen.org/publication/PubMed/39673241" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792", "database": "PubMed", "categories": [ "Other" ] }, { "id": "39673241", "url": "https://glygen.org/publication/PubMed/39673241", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "VVRQMLKVAGECHLHGLVHR", "down_seq": "MKPENFLFKSAQLDSPLKAT", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "PubMed", "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792" }, { "database": "PubMed", "id": "39673241", "url": "https://glygen.org/publication/PubMed/39673241" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q9FKW4-1.198.198", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.245.245", "start_pos": 245, "end_pos": 245, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.", "journal": "Cell host & microbe", "date": "2014-11-12", "authors": "Monaghan Jacqueline, Matschi Susanne, Shorinola Oluwaseyi, Rovenich Hanna, Matei Alexandra, Segonzac C\u00e9cile, Malinovsky Frederikke Gro, Rathjen John P, MacLean Dan, Romeis Tina, Zipfel Cyril", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVGSAYYVAPEVLKRRSGPE", "down_seq": "DVWSIGVITYILLCGRRPFW", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "L", "comment": "In mod1; abolishes kinase activity; when associated with V-295.", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "PubMed", "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9FKW4-1.228.228", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.", "journal": "Cell host & microbe", "date": "2014-11-12", "authors": "Monaghan Jacqueline, Matschi Susanne, Shorinola Oluwaseyi, Rovenich Hanna, Matei Alexandra, Segonzac C\u00e9cile, Malinovsky Frederikke Gro, Rathjen John P, MacLean Dan, Romeis Tina, Zipfel Cyril", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "EVLRNKPDFSRKPWATISDS", "down_seq": "KDFVKKLLVKDPRARLTAAQ", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "V", "comment": "In mod1; abolishes kinase activity; when associated with L-245.", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "PubMed", "id": "25525792", "url": "https://glygen.org/publication/PubMed/25525792" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGVCFSAIRVTGAS", "down_seq": "SRRSSQTKSKAAPTPIDTKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9FKW4-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9FKW4-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9FKW4-1.24.24", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGVCFSAIRVTGASS", "down_seq": "RRSSQTKSKAAPTPIDTKAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9FKW4-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9FKW4-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9FKW4-1.24.24", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.198.198", "start_pos": 198, "end_pos": 198, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ECHLHGLVHRDMKPENFLFK", "down_seq": "AQLDSPLKATDFGLSDFIKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser198" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9FKW4-1.188.188", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9FKW4-1.213.213", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28).", "journal": "The Journal of biological chemistry", "date": "2017-03-10", "authors": "Bender Kyle W, Blackburn R Kevin, Monaghan Jacqueline, Derbyshire Paul, Menke Frank L H, Zipfel Cyril, Goshe Michael B, Zielinski Raymond E, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NFLFKSAQLDSPLKATDFGL", "down_seq": "DFIKPGKRFHDIVGSAYYVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9FKW4-1", "kinase_gene_name": "CPK28", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194" } ], "site_lbl": "Ser213" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9FKW4-1.198.198", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9FKW4-1.228.228", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.228.228", "start_pos": 228, "end_pos": 228, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2013-03", "authors": "Matschi Susanne, Werner S\u00f6ren, Schulze Waltraud X, Legen Julia, Hilger Hartmut H, Romeis Tina", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TDFGLSDFIKPGKRFHDIVG", "down_seq": "AYYVAPEVLKRRSGPESDVW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "PubMed", "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373" }, { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "site_lbl": "Ser228" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9FKW4-1.213.213", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9FKW4-1.245.245", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CFSAIRVTGASSSRRSSQTK", "down_seq": "KAAPTPIDTKASTKRRTGSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser24" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9FKW4-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9FKW4-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9FKW4-1.16.16", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.318.318", "start_pos": 318, "end_pos": 318, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2013-03", "authors": "Matschi Susanne, Werner S\u00f6ren, Schulze Waltraud X, Legen Julia, Hilger Hartmut H, Romeis Tina", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373" } ] }, { "title": "Phosphorylation-dependent subfunctionalization of the calcium-dependent protein kinase CPK28.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2021-05-11", "authors": "Bredow Melissa, Bender Kyle W, Johnson Dingee Alexandra, Holmes Danalyn R, Thomson Alysha, Ciren Danielle, Tanney Cailun A S, Dunning Katherine E, Trujillo Marco, Huber Steven C, Monaghan Jacqueline", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "33941701", "url": "https://glygen.org/publication/PubMed/33941701" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "33941701", "url": "https://glygen.org/publication/PubMed/33941701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FVKKLLVKDPRARLTAAQAL", "down_seq": "HAWVREGGNATDIPVDISVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "PubMed", "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373" }, { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "33941701", "url": "https://glygen.org/publication/PubMed/33941701" } ], "site_lbl": "Ser318" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.360.360", "start_pos": 360, "end_pos": 360, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28).", "journal": "The Journal of biological chemistry", "date": "2017-03-10", "authors": "Bender Kyle W, Blackburn R Kevin, Monaghan Jacqueline, Derbyshire Paul, Menke Frank L H, Zipfel Cyril, Goshe Michael B, Zielinski Raymond E, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLRQFVRYSRLKQFALRALA", "down_seq": "TLDEAEISDLRDQFDAIDVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9FKW4-1", "kinase_gene_name": "CPK28", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194" } ], "site_lbl": "Ser360" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.463.463", "start_pos": 463, "end_pos": 463, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Multisite phosphorylation of 14-3-3 proteins by calcium-dependent protein kinases.", "journal": "The Biochemical journal", "date": "2014-04-01", "authors": "Swatek Kirby N, Wilson Rashaun S, Ahsan Nagib, Tritz Rebecca L, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "24438037", "url": "https://glygen.org/publication/PubMed/24438037" } ] }, { "title": "Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28).", "journal": "The Journal of biological chemistry", "date": "2017-03-10", "authors": "Bender Kyle W, Blackburn R Kevin, Monaghan Jacqueline, Derbyshire Paul, Menke Frank L H, Zipfel Cyril, Goshe Michael B, Zielinski Raymond E, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24438037", "url": "https://glygen.org/publication/PubMed/24438037", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EKWQLRSRAAFEKFDLDKDG", "down_seq": "ITPEELRMHTGLRGSIDPLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9FKW4-1", "kinase_gene_name": "CPK28", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "24438037", "url": "https://glygen.org/publication/PubMed/24438037" }, { "database": "PubMed", "id": "28154194", "url": "https://glygen.org/publication/PubMed/28154194" } ], "site_lbl": "Tyr463" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.495.495", "start_pos": 495, "end_pos": 495, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2013-03", "authors": "Matschi Susanne, Werner S\u00f6ren, Schulze Waltraud X, Legen Julia, Hilger Hartmut H, Romeis Tina", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRGSIDPLLDEADIDRDGKI", "down_seq": "LHEFRRLLRTASISSQRAPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "PubMed", "id": "23252373", "url": "https://glygen.org/publication/PubMed/23252373" }, { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "site_lbl": "Ser495" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q9FKW4-1.507.507", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9FKW4-1.510.510", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9FKW4-1.515.515", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.507.507", "start_pos": 507, "end_pos": 507, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIDRDGKISLHEFRRLLRTA", "down_seq": "ISSQRAPSPAGHRNLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser507" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9FKW4-1.495.495", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9FKW4-1.510.510", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9FKW4-1.515.515", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RDGKISLHEFRRLLRTASIS", "down_seq": "QRAPSPAGHRNLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser510" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9FKW4-1.495.495", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9FKW4-1.507.507", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9FKW4-1.515.515", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.515.515", "start_pos": 515, "end_pos": 515, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLHEFRRLLRTASISSQRAP", "down_seq": "PAGHRNLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser515" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9FKW4-1.495.495", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9FKW4-1.507.507", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9FKW4-1.510.510", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FKW4-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q9FKW4-1", "length": 523, "uniprot_id": "CDPKS_ARATH", "protein_name": "Calcium-dependent protein kinase 28", "refseq_ac": "NP_001078806", "refseq_name": "calcium-dependent protein kinase 28", "gene_name": "CPK28", "gene_names_uniprotkb": "CPK28; K2A18.29; K2A18_29", "gene_names_refseq": "CPK28; K2A18.29; K2A18_29; calcium-dependent protein kinase 28", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FKW4", "url": "https://www.uniprot.org/uniprotkb/Q9FKW4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] } ], "crossref": [ { "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGVCF", "down_seq": "AIRVTGASSSRRSSQTKSKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FKW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FKW4" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "295", "end_pos": "295" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "507", "end_pos": "507" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q9FKW4-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9FKW4-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9FKW4-1.24.24", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" }, { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLLDGSPAPLLKICDFGYSK", "down_seq": "SILHSRPKSTVGTPAYIAPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P43292-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P43292-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P43292-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P43292-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P43292-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P43292-1.165.165", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" }, { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLDGSPAPLLKICDFGYSKS", "down_seq": "ILHSRPKSTVGTPAYIAPEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser150" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P43292-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P43292-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P43292-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P43292-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P43292-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P43292-1.165.165", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" }, { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPAPLLKICDFGYSKSSILH", "down_seq": "RPKSTVGTPAYIAPEVLSRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser154" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P43292-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P43292-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P43292-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P43292-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P43292-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P43292-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P43292-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" }, { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLKICDFGYSKSSILHSRPK", "down_seq": "TVGTPAYIAPEVLSRREYDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P43292-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P43292-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P43292-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P43292-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P43292-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P43292-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P43292-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" }, { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKICDFGYSKSSILHSRPKS", "down_seq": "VGTPAYIAPEVLSRREYDGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Thr159" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P43292-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P43292-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P43292-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P43292-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43292-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P43292-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P43292-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CDFGYSKSSILHSRPKSTVG", "down_seq": "PAYIAPEVLSRREYDGKHAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Thr162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P43292-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P43292-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P43292-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P43292-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P43292-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43292-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P43292-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GYSKSSILHSRPKSTVGTPA", "down_seq": "IAPEVLSRREYDGKHADVWS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Tyr165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P43292-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P43292-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P43292-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P43292-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P43292-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P43292-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P43292-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LHSRPKSTVGTPAYIAPEVL", "down_seq": "RREYDGKHADVWSCGVTLYV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ], "site_lbl": "Ser172" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P43292-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P43292-1.158.158", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P43292-1.159.159", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P43292-1.162.162", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P43292-1.165.165", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.310.310", "start_pos": 310, "end_pos": 310, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIMKIVGEARNPAPSTSAVK", "down_seq": "SGSGADEEEEEDVEAEVEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser310" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P43292-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43292-1.313.313", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IMKIVGEARNPAPSTSAVKS", "down_seq": "GSGADEEEEEDVEAEVEEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser311" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P43292-1.310.310", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P43292-1.313.313", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43292-1.313.313", "start_pos": 313, "end_pos": 313, "uniprot_canonical_ac": "P43292-1", "length": 353, "uniprot_id": "SRK2G_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2G", "refseq_ac": "NP_196476", "refseq_name": "SNF1-related protein kinase 2.1", "gene_name": "SNRK21; SRK2G", "gene_names_uniprotkb": "SNRK21; SRK2G; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; OSKL8; SNRK2-1; SNRK2.1; SRK2G", "gene_names_refseq": "ARABIDOPSIS SERINE/THREONINE KINASE 2; ARABIDOPSIS SKP1-LIKE1; ASK2; MAH20.15; MAH20_15; SNF1-related protein kinase 2.1; SNRK2-1; SNRK2.1; SRK2G", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43292", "url": "https://www.uniprot.org/uniprotkb/P43292" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KIVGEARNPAPSTSAVKSSG", "down_seq": "GADEEEEEDVEAEVEEEEDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43292", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43292" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser313" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P43292-1.310.310", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P43292-1.311.311", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZT48-1.126.126", "start_pos": 126, "end_pos": 126, "uniprot_canonical_ac": "Q9ZT48-1", "length": 632, "uniprot_id": "ATE1_ARATH", "protein_name": "Arginyl-tRNA--protein transferase 1", "refseq_ac": "NP_196189", "refseq_name": "arginine-tRNA protein transferase 1", "gene_name": "ATE1", "gene_names_uniprotkb": "ATE1; ATATE1; DELAYED LEAF SENESCENCE 1; DLS1; MJJ3.10; MJJ3.1; MJJ3_1", "gene_names_refseq": "ARGININE-TRNA PROTEIN TRANSFERASE 1; ATATE1; ATE1; DELAYED LEAF SENESCENCE 1; DLS1; MJJ3.1; MJJ3_1; arginine-tRNA protein transferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZT48", "url": "https://www.uniprot.org/uniprotkb/Q9ZT48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LERFLDGKLDVQPREQRGAS", "down_seq": "SGDVSDTRRKTLGAAKSEEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser126" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "293", "end_pos": "293" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9ZT48-1.127.127", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZT48-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "Q9ZT48-1", "length": 632, "uniprot_id": "ATE1_ARATH", "protein_name": "Arginyl-tRNA--protein transferase 1", "refseq_ac": "NP_196189", "refseq_name": "arginine-tRNA protein transferase 1", "gene_name": "ATE1", "gene_names_uniprotkb": "ATE1; ATATE1; DELAYED LEAF SENESCENCE 1; DLS1; MJJ3.10; MJJ3.1; MJJ3_1", "gene_names_refseq": "ARGININE-TRNA PROTEIN TRANSFERASE 1; ATATE1; ATE1; DELAYED LEAF SENESCENCE 1; DLS1; MJJ3.1; MJJ3_1; arginine-tRNA protein transferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZT48", "url": "https://www.uniprot.org/uniprotkb/Q9ZT48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERFLDGKLDVQPREQRGASS", "down_seq": "GDVSDTRRKTLGAAKSEENK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser127" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "293", "end_pos": "293" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9ZT48-1.126.126", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZT48-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "Q9ZT48-1", "length": 632, "uniprot_id": "ATE1_ARATH", "protein_name": "Arginyl-tRNA--protein transferase 1", "refseq_ac": "NP_196189", "refseq_name": "arginine-tRNA protein transferase 1", "gene_name": "ATE1", "gene_names_uniprotkb": "ATE1; ATATE1; DELAYED LEAF SENESCENCE 1; DLS1; MJJ3.10; MJJ3.1; MJJ3_1", "gene_names_refseq": "ARGININE-TRNA PROTEIN TRANSFERASE 1; ATATE1; ATE1; DELAYED LEAF SENESCENCE 1; DLS1; MJJ3.1; MJJ3_1; arginine-tRNA protein transferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZT48", "url": "https://www.uniprot.org/uniprotkb/Q9ZT48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PDVSIKVCKGHINFLSSAKD", "down_seq": "FSDRDVVPNGNISRGANSLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser275" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "293", "end_pos": "293" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q9ZT48-1.293.293", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZT48-1.293.293", "start_pos": 293, "end_pos": 293, "uniprot_canonical_ac": "Q9ZT48-1", "length": 632, "uniprot_id": "ATE1_ARATH", "protein_name": "Arginyl-tRNA--protein transferase 1", "refseq_ac": "NP_196189", "refseq_name": "arginine-tRNA protein transferase 1", "gene_name": "ATE1", "gene_names_uniprotkb": "ATE1; ATATE1; DELAYED LEAF SENESCENCE 1; DLS1; MJJ3.10; MJJ3.1; MJJ3_1", "gene_names_refseq": "ARGININE-TRNA PROTEIN TRANSFERASE 1; ATATE1; ATE1; DELAYED LEAF SENESCENCE 1; DLS1; MJJ3.1; MJJ3_1; arginine-tRNA protein transferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZT48", "url": "https://www.uniprot.org/uniprotkb/Q9ZT48" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDSFSDRDVVPNGNISRGAN", "down_seq": "LDGSETLHAKKDSENHQARK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9ZT48", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ZT48" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser293" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "127", "end_pos": "127" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "293", "end_pos": "293" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9ZT48-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZTX9-1.587.587", "start_pos": 587, "end_pos": 587, "uniprot_canonical_ac": "Q9ZTX9-1", "length": 788, "uniprot_id": "ARFD_ARATH", "protein_name": "Auxin response factor 4", "refseq_ac": "NP_200853", "refseq_name": "auxin response factor 4", "gene_name": "ARF4", "gene_names_uniprotkb": "ARF4; MUF9.7; MUF9.8; MUF9_7; auxin response factor 4", "gene_names_refseq": "ARF4; MUF9.7; MUF9_7; auxin response factor 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZTX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZTX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9ZTX9", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9ZTX9" }, { "database": "O-GlcNAc Atlas", "id": "Q9ZTX9", "url": "https://oglcnac.org/atlas/detail/Q9ZTX9" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9ZTX9", "url": "https://oglcnac.org/atlas/detail/Q9ZTX9", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LHGIRSTHVPYQNPYNAGNQ", "down_seq": "SGPPSRAINFGEETRKFDAQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser587", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9ZTX9", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9ZTX9" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "587", "end_pos": "587" }, { "start_pos": "588", "end_pos": "588" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9ZTX9-1.588.588", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZTX9-1.588.588", "start_pos": 588, "end_pos": 588, "uniprot_canonical_ac": "Q9ZTX9-1", "length": 788, "uniprot_id": "ARFD_ARATH", "protein_name": "Auxin response factor 4", "refseq_ac": "NP_200853", "refseq_name": "auxin response factor 4", "gene_name": "ARF4", "gene_names_uniprotkb": "ARF4; MUF9.7; MUF9.8; MUF9_7; auxin response factor 4", "gene_names_refseq": "ARF4; MUF9.7; MUF9_7; auxin response factor 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZTX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZTX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9ZTX9", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9ZTX9" }, { "database": "O-GlcNAc Atlas", "id": "Q9ZTX9", "url": "https://oglcnac.org/atlas/detail/Q9ZTX9" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9ZTX9", "url": "https://oglcnac.org/atlas/detail/Q9ZTX9", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HGIRSTHVPYQNPYNAGNQS", "down_seq": "GPPSRAINFGEETRKFDAQN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser588", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9ZTX9", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9ZTX9" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "587", "end_pos": "587" }, { "start_pos": "588", "end_pos": "588" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9ZTX9-1.587.587", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ZTX9-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9ZTX9-1", "length": 788, "uniprot_id": "ARFD_ARATH", "protein_name": "Auxin response factor 4", "refseq_ac": "NP_200853", "refseq_name": "auxin response factor 4", "gene_name": "ARF4", "gene_names_uniprotkb": "ARF4; MUF9.7; MUF9.8; MUF9_7; auxin response factor 4", "gene_names_refseq": "ARF4; MUF9.7; MUF9_7; auxin response factor 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9ZTX9", "url": "https://www.uniprot.org/uniprotkb/Q9ZTX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9ZTX9", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9ZTX9" }, { "database": "O-GlcNAc Atlas", "id": "Q9ZTX9", "url": "https://oglcnac.org/atlas/detail/Q9ZTX9" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9ZTX9", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9ZTX9", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9ZTX9", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9ZTX9" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "587", "end_pos": "587" }, { "start_pos": "588", "end_pos": "588" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFA5-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "Q9FFA5-1", "length": 202, "uniprot_id": "RMR14_ARATH", "protein_name": "Remorin 1.4", "refseq_ac": "NP_197764", "refseq_name": "Remorin family protein", "gene_name": "MRO11.21; REM1.4", "gene_names_uniprotkb": "MRO11.21; REM1.4; MRO11.21; MRO11_21", "gene_names_refseq": "MRO11.21; MRO11_21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFA5", "url": "https://www.uniprot.org/uniprotkb/Q9FFA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAEEEPKKVTETVSEPTP", "down_seq": "PEVPVEKPAAAADVAPQEKP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr19", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9FFA5-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "Q9FFA5-1", "length": 202, "uniprot_id": "RMR14_ARATH", "protein_name": "Remorin 1.4", "refseq_ac": "NP_197764", "refseq_name": "Remorin family protein", "gene_name": "MRO11.21; REM1.4", "gene_names_uniprotkb": "MRO11.21; REM1.4; MRO11.21; MRO11_21", "gene_names_refseq": "MRO11.21; MRO11_21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFA5", "url": "https://www.uniprot.org/uniprotkb/Q9FFA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FFA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFA5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FFA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFA5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEAEKCKVENKAEKKLSSIG", "down_seq": "WENNKKAAVEAELKKMEEQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFA5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser121" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FFA5-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "Q9FFA5-1", "length": 202, "uniprot_id": "RMR14_ARATH", "protein_name": "Remorin 1.4", "refseq_ac": "NP_197764", "refseq_name": "Remorin family protein", "gene_name": "MRO11.21; REM1.4", "gene_names_uniprotkb": "MRO11.21; REM1.4; MRO11.21; MRO11_21", "gene_names_refseq": "MRO11.21; MRO11_21", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FFA5", "url": "https://www.uniprot.org/uniprotkb/Q9FFA5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9FFA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFA5" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q9FFA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFA5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEEEKKEGSVNRDAVLARVE", "down_seq": "EKRMSLIKAWEEAEKCKVEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FFA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FFA5" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr90" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FY74-1.720.720", "start_pos": 720, "end_pos": 720, "uniprot_canonical_ac": "Q9FY74-1", "length": 1007, "uniprot_id": "CMTA1_ARATH", "protein_name": "Calmodulin-binding transcription activator 1", "refseq_ac": "", "refseq_name": "", "gene_name": "CAMTA1; EICBPB", "gene_names_uniprotkb": "CAMTA1; EICBPB; CAMTA1; CMTA1; EICBP.B; SR2; T5E8.210; T5E8_210", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FY74", "url": "https://www.uniprot.org/uniprotkb/Q9FY74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISGFLAESSLTSYLEKLTVD", "down_seq": "KENSPANSCGEKAVQTVSER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser720" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "720", "end_pos": "720" }, { "start_pos": "724", "end_pos": "724" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "942", "end_pos": "942" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9FY74-1.724.724", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FY74-1.724.724", "start_pos": 724, "end_pos": 724, "uniprot_canonical_ac": "Q9FY74-1", "length": 1007, "uniprot_id": "CMTA1_ARATH", "protein_name": "Calmodulin-binding transcription activator 1", "refseq_ac": "", "refseq_name": "", "gene_name": "CAMTA1; EICBPB", "gene_names_uniprotkb": "CAMTA1; EICBPB; CAMTA1; CMTA1; EICBP.B; SR2; T5E8.210; T5E8_210", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FY74", "url": "https://www.uniprot.org/uniprotkb/Q9FY74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAESSLTSYLEKLTVDSKEN", "down_seq": "PANSCGEKAVQTVSERTAAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser724" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "720", "end_pos": "720" }, { "start_pos": "724", "end_pos": "724" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "942", "end_pos": "942" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9FY74-1.720.720", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FY74-1.781.781", "start_pos": 781, "end_pos": 781, "uniprot_canonical_ac": "Q9FY74-1", "length": 1007, "uniprot_id": "CMTA1_ARATH", "protein_name": "Calmodulin-binding transcription activator 1", "refseq_ac": "", "refseq_name": "", "gene_name": "CAMTA1; EICBPB", "gene_names_uniprotkb": "CAMTA1; EICBPB; CAMTA1; CMTA1; EICBP.B; SR2; T5E8.210; T5E8_210", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FY74", "url": "https://www.uniprot.org/uniprotkb/Q9FY74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAVRNATQAADRLHQVFRMQ", "down_seq": "FQRKQLCDIGDDEKIDISDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser781" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "720", "end_pos": "720" }, { "start_pos": "724", "end_pos": "724" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "942", "end_pos": "942" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9FY74-1.942.942", "start_pos": 942, "end_pos": 942, "uniprot_canonical_ac": "Q9FY74-1", "length": 1007, "uniprot_id": "CMTA1_ARATH", "protein_name": "Calmodulin-binding transcription activator 1", "refseq_ac": "", "refseq_name": "", "gene_name": "CAMTA1; EICBPB", "gene_names_uniprotkb": "CAMTA1; EICBPB; CAMTA1; CMTA1; EICBP.B; SR2; T5E8.210; T5E8_210", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FY74", "url": "https://www.uniprot.org/uniprotkb/Q9FY74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q9FY74", "url": "https://www.uniprot.org/uniprotkb/Q9FY74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKEGRKQTEERLQKALTRVK", "down_seq": "MVQYPEARDQYRRLLTVVEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9FY74", "url": "https://www.uniprot.org/uniprotkb/Q9FY74" }, { "database": "iPTMnet", "id": "Q9FY74", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FY74" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser942" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "720", "end_pos": "720" }, { "start_pos": "724", "end_pos": "724" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "942", "end_pos": "942" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82660-1.55.56", "start_pos": 55, "end_pos": 56, "uniprot_canonical_ac": "O82660-1", "length": 403, "uniprot_id": "P2SAF_ARATH", "protein_name": "Photosystem II stability/assembly factor HCF136, chloroplastic", "refseq_ac": "NP_197703", "refseq_name": "photosystem II stability/assembly factor, chloroplast (HCF136)", "gene_name": "HCF136", "gene_names_uniprotkb": "HCF136; MYJ24.11; MYJ24_11", "gene_names_refseq": "HCF136; HIGH CHLOROPHYLL FLUORESCENCE 136; MYJ24.11; MYJ24_11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82660", "url": "https://www.uniprot.org/uniprotkb/O82660" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Different lumen-targeting pathways for nuclear-encoded versus cyanobacterial/plastid-encoded Hcf136 proteins.", "journal": "FEBS letters", "date": "2000-02-04", "authors": "Hynds P J, Pl\u00fccken H, Westhoff P, Robinson C", "evidence": [ { "database": "UniProtKB", "id": "O82660", "url": "https://www.uniprot.org/uniprotkb/O82660" } ], "reference": [ { "type": "PubMed", "id": "10664464", "url": "https://glygen.org/publication/PubMed/10664464" } ] } ], "crossref": [ { "id": "O82660", "url": "https://www.uniprot.org/uniprotkb/O82660", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10664464", "url": "https://glygen.org/publication/PubMed/10664464", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "RR", "start_aa": "R", "up_seq": "SSSPPPSPSPSSSSSSLSFS", "down_seq": "ELLYQSAAVSLSLSSIVGPA", "mutagenesis": [ { "sequence_org": "RR", "sequence_mut": "KK", "comment": "Protein is imported into chloroplasts but is unable to translocate into the thylakoid lumen.", "evidence": [ { "database": "UniProtKB", "id": "O82660", "url": "https://www.uniprot.org/uniprotkb/O82660" }, { "database": "PubMed", "id": "10664464", "url": "https://glygen.org/publication/PubMed/10664464" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "55", "end_pos": "56" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFT6-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "Q9LFT6-1", "length": 258, "uniprot_id": "HNL_ARATH", "protein_name": "Alpha-hydroxynitrile lyase", "refseq_ac": "NP_196592", "refseq_name": "methyl esterase 5", "gene_name": "HNL; MES5", "gene_names_uniprotkb": "HNL; MES5; ATMES5; AtHNL; F18D22.70; F18D22_70; HNL; HYDROXYNITRILE LYASE; MES5; methyl esterase 5", "gene_names_refseq": "ARABIDOPSIS THALIANA METHYL ESTERASE 5; ATMES5; AtHNL; F18D22.70; F18D22_70; HNL; HYDROXYNITRILE LYASE; MES5; methyl esterase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "An R-selective hydroxynitrile lyase from Arabidopsis thaliana with an alpha/beta-hydrolase fold.", "journal": "Angewandte Chemie (International ed. in English)", "date": "2007", "authors": "Andexer Jennifer, von Langermann Jan, Mell Annett, Bocola Marco, Kragl Udo, Eggert Thorsten, Pohl Martina", "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" } ], "reference": [ { "type": "PubMed", "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254" } ] } ], "crossref": [ { "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "EKFSEEGYGSVQRVYVMSSE", "down_seq": "KAIPCDFIRWMIDNFNVSKV", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" }, { "database": "PubMed", "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFT6-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "Q9LFT6-1", "length": 258, "uniprot_id": "HNL_ARATH", "protein_name": "Alpha-hydroxynitrile lyase", "refseq_ac": "NP_196592", "refseq_name": "methyl esterase 5", "gene_name": "HNL; MES5", "gene_names_uniprotkb": "HNL; MES5; ATMES5; AtHNL; F18D22.70; F18D22_70; HNL; HYDROXYNITRILE LYASE; MES5; methyl esterase 5", "gene_names_refseq": "ARABIDOPSIS THALIANA METHYL ESTERASE 5; ATMES5; AtHNL; F18D22.70; F18D22_70; HNL; HYDROXYNITRILE LYASE; MES5; methyl esterase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "An R-selective hydroxynitrile lyase from Arabidopsis thaliana with an alpha/beta-hydrolase fold.", "journal": "Angewandte Chemie (International ed. in English)", "date": "2007", "authors": "Andexer Jennifer, von Langermann Jan, Mell Annett, Bocola Marco, Kragl Udo, Eggert Thorsten, Pohl Martina", "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" } ], "reference": [ { "type": "PubMed", "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254" } ] } ], "crossref": [ { "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "IRWMIDNFNVSKVYEIDGGD", "down_seq": "MVMLSKPQKLFDSLSAIATD", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "F", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" }, { "database": "PubMed", "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LFT6-1.81.81", "start_pos": 81, "end_pos": 81, "uniprot_canonical_ac": "Q9LFT6-1", "length": 258, "uniprot_id": "HNL_ARATH", "protein_name": "Alpha-hydroxynitrile lyase", "refseq_ac": "NP_196592", "refseq_name": "methyl esterase 5", "gene_name": "HNL; MES5", "gene_names_uniprotkb": "HNL; MES5; ATMES5; AtHNL; F18D22.70; F18D22_70; HNL; HYDROXYNITRILE LYASE; MES5; methyl esterase 5", "gene_names_refseq": "ARABIDOPSIS THALIANA METHYL ESTERASE 5; ATMES5; AtHNL; F18D22.70; F18D22_70; HNL; HYDROXYNITRILE LYASE; MES5; methyl esterase 5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "An R-selective hydroxynitrile lyase from Arabidopsis thaliana with an alpha/beta-hydrolase fold.", "journal": "Angewandte Chemie (International ed. in English)", "date": "2007", "authors": "Andexer Jennifer, von Langermann Jan, Mell Annett, Bocola Marco, Kragl Udo, Eggert Thorsten, Pohl Martina", "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" } ], "reference": [ { "type": "PubMed", "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254" } ] } ], "crossref": [ { "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLIETLKSLPENEEVILVGF", "down_seq": "FGGINIALAADIFPAKIKVL", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9LFT6", "url": "https://www.uniprot.org/uniprotkb/Q9LFT6" }, { "database": "PubMed", "id": "17907254", "url": "https://glygen.org/publication/PubMed/17907254" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42799-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "P42799-1", "length": 474, "uniprot_id": "GSA1_ARATH", "protein_name": "Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic", "refseq_ac": "NP_201162", "refseq_name": "glutamate-1-semialdehyde-2,1-aminomutase", "gene_name": "GSA1", "gene_names_uniprotkb": "GSA1; 1-AMINOMUTASE; 1-aminomutase; GLUTAMATE-1-SEMIALDEHYDE-2; GSA-AM; HEML1; MBK5.3; MBK5_3; glutamate-1-semialdehyde-2", "gene_names_refseq": "''glutamate-1-semialdehyde-2; 1-AMINOMUTASE; 1-aminomutase''; 1-aminomutase; GLUTAMATE-1-SEMIALDEHYDE-2; GSA-AM; GSA1; MBK5.3; MBK5_3; glutamate-1-semialdehyde-2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42799", "url": "https://www.uniprot.org/uniprotkb/P42799" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GEISAVILEPVVGNSGFIPP", "down_seq": "PEFINGLRQLTKDNGVLLIF", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr265", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "265", "end_pos": "265" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GZB6-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "Q8GZB6-1", "length": 624, "uniprot_id": "SUVH4_ARATH", "protein_name": "Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4", "refseq_ac": "NP_196900", "refseq_name": "histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein", "gene_name": "SUVH4", "gene_names_uniprotkb": "SUVH4; KRYPTONITE; KYP; MAC12.7; MAC12_7; SDG33; SET DOMAIN PROTEIN 33; SET33; SU(VAR)3-9 homolog 4", "gene_names_refseq": "KRYPTONITE; KYP; MAC12.7; MAC12_7; SDG33; SET DOMAIN PROTEIN 33; SU(VAR)3-9 homolog 4; SUVH4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZB6", "url": "https://www.uniprot.org/uniprotkb/Q8GZB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LERGNLALKHCCEYNVPVRV", "down_seq": "RGHNCKSSYTKRVYTYDGLY", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr259", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GZB6-1.359.359", "start_pos": 359, "end_pos": 359, "uniprot_canonical_ac": "Q8GZB6-1", "length": 624, "uniprot_id": "SUVH4_ARATH", "protein_name": "Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4", "refseq_ac": "NP_196900", "refseq_name": "histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein", "gene_name": "SUVH4", "gene_names_uniprotkb": "SUVH4; KRYPTONITE; KYP; MAC12.7; MAC12_7; SDG33; SET DOMAIN PROTEIN 33; SET33; SU(VAR)3-9 homolog 4", "gene_names_refseq": "KRYPTONITE; KYP; MAC12.7; MAC12_7; SDG33; SET DOMAIN PROTEIN 33; SU(VAR)3-9 homolog 4; SUVH4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZB6", "url": "https://www.uniprot.org/uniprotkb/Q8GZB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLEFKGIPATNRVDDSPVSP", "down_seq": "SGFTYIKSLIIEPNVIIPKS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr359", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GZB6-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "Q8GZB6-1", "length": 624, "uniprot_id": "SUVH4_ARATH", "protein_name": "Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4", "refseq_ac": "NP_196900", "refseq_name": "histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein", "gene_name": "SUVH4", "gene_names_uniprotkb": "SUVH4; KRYPTONITE; KYP; MAC12.7; MAC12_7; SDG33; SET DOMAIN PROTEIN 33; SET33; SU(VAR)3-9 homolog 4", "gene_names_refseq": "KRYPTONITE; KYP; MAC12.7; MAC12_7; SDG33; SET DOMAIN PROTEIN 33; SU(VAR)3-9 homolog 4; SUVH4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GZB6", "url": "https://www.uniprot.org/uniprotkb/Q8GZB6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GZB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZB6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GZB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZB6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GZB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZB6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEICVDDTELHEKEEENVDG", "down_seq": "PKRRSPPKLTAMQKGKQKLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GZB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GZB6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser69" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S2T0-1.769.769", "start_pos": 769, "end_pos": 769, "uniprot_canonical_ac": "Q8S2T0-1", "length": 788, "uniprot_id": "GRIP_ARATH", "protein_name": "Protein GRIP", "refseq_ac": "NP_569025", "refseq_name": "Golgi-localized GRIP domain-containing protein", "gene_name": "ATGRIP; GRIP", "gene_names_uniprotkb": "ATGRIP; GRIP; GRIP; K2A18.10; K2A18_10", "gene_names_refseq": "ATGRIP; GRIP; K2A18.10; K2A18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IQKCQQAYHSSTTAATTTEA", "down_seq": "PSPASEGSGLSVFSRFSFS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr769", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "769", "end_pos": "769" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" }, { "start_pos": "719", "end_pos": "719" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "623", "end_pos": "623" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8S2T0-1.717.717", "start_pos": 717, "end_pos": 717, "uniprot_canonical_ac": "Q8S2T0-1", "length": 788, "uniprot_id": "GRIP_ARATH", "protein_name": "Protein GRIP", "refseq_ac": "NP_569025", "refseq_name": "Golgi-localized GRIP domain-containing protein", "gene_name": "ATGRIP; GRIP", "gene_names_uniprotkb": "ATGRIP; GRIP; GRIP; K2A18.10; K2A18_10", "gene_names_refseq": "ATGRIP; GRIP; K2A18.10; K2A18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "An Arabidopsis GRIP domain protein locates to the trans-Golgi and binds the small GTPase ARL1.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-11", "authors": "Latijnhouwers Maita, Hawes Chris, Carvalho Claudine, Oparka Karl, Gillingham Alison K, Boevink Petra", "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "16236155", "url": "https://glygen.org/publication/PubMed/16236155" } ] }, { "title": "ARL1 plays a role in the binding of the GRIP domain of a peripheral matrix protein to the Golgi apparatus in plant cells.", "journal": "Plant molecular biology", "date": "2006-06", "authors": "Stefano Giovanni, Renna Luciana, Hanton Sally L, Chatre Laurent, Haas Thomas A, Brandizzi Federica", "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "16830178", "url": "https://glygen.org/publication/PubMed/16830178" } ] } ], "crossref": [ { "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16236155", "url": "https://glygen.org/publication/PubMed/16236155", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16830178", "url": "https://glygen.org/publication/PubMed/16830178", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LKTELREMERKQKREGVDMT", "down_seq": "LKNVILKLLETGEVEALLPV", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Reduced interaction with ARF3/ARL1 and loss of Golgi targeting.", "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" }, { "database": "PubMed", "id": "16236155", "url": "https://glygen.org/publication/PubMed/16236155" }, { "database": "PubMed", "id": "16830178", "url": "https://glygen.org/publication/PubMed/16830178" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "769", "end_pos": "769" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" }, { "start_pos": "719", "end_pos": "719" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "623", "end_pos": "623" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8S2T0-1.719.719", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S2T0-1.719.719", "start_pos": 719, "end_pos": 719, "uniprot_canonical_ac": "Q8S2T0-1", "length": 788, "uniprot_id": "GRIP_ARATH", "protein_name": "Protein GRIP", "refseq_ac": "NP_569025", "refseq_name": "Golgi-localized GRIP domain-containing protein", "gene_name": "ATGRIP; GRIP", "gene_names_uniprotkb": "ATGRIP; GRIP; GRIP; K2A18.10; K2A18_10", "gene_names_refseq": "ATGRIP; GRIP; K2A18.10; K2A18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ARL1 plays a role in the binding of the GRIP domain of a peripheral matrix protein to the Golgi apparatus in plant cells.", "journal": "Plant molecular biology", "date": "2006-06", "authors": "Stefano Giovanni, Renna Luciana, Hanton Sally L, Chatre Laurent, Haas Thomas A, Brandizzi Federica", "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "16830178", "url": "https://glygen.org/publication/PubMed/16830178" } ] } ], "crossref": [ { "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16830178", "url": "https://glygen.org/publication/PubMed/16830178", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "TELREMERKQKREGVDMTYL", "down_seq": "NVILKLLETGEVEALLPVVG", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Reduced interaction with ARF3/ARL1 and loss of Golgi targeting.", "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" }, { "database": "PubMed", "id": "16830178", "url": "https://glygen.org/publication/PubMed/16830178" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "769", "end_pos": "769" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" }, { "start_pos": "719", "end_pos": "719" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "623", "end_pos": "623" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8S2T0-1.717.717", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S2T0-1.401.401", "start_pos": 401, "end_pos": 401, "uniprot_canonical_ac": "Q8S2T0-1", "length": 788, "uniprot_id": "GRIP_ARATH", "protein_name": "Protein GRIP", "refseq_ac": "NP_569025", "refseq_name": "Golgi-localized GRIP domain-containing protein", "gene_name": "ATGRIP; GRIP", "gene_names_uniprotkb": "ATGRIP; GRIP; GRIP; K2A18.10; K2A18_10", "gene_names_refseq": "ATGRIP; GRIP; K2A18.10; K2A18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AESNYLQAEIEVAKMRSQLG", "down_seq": "EMSMQTQILSTKDAELKGAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser401" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "769", "end_pos": "769" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" }, { "start_pos": "719", "end_pos": "719" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "623", "end_pos": "623" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8S2T0-1.404.404", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8S2T0-1.407.407", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S2T0-1.404.404", "start_pos": 404, "end_pos": 404, "uniprot_canonical_ac": "Q8S2T0-1", "length": 788, "uniprot_id": "GRIP_ARATH", "protein_name": "Protein GRIP", "refseq_ac": "NP_569025", "refseq_name": "Golgi-localized GRIP domain-containing protein", "gene_name": "ATGRIP; GRIP", "gene_names_uniprotkb": "ATGRIP; GRIP; GRIP; K2A18.10; K2A18_10", "gene_names_refseq": "ATGRIP; GRIP; K2A18.10; K2A18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NYLQAEIEVAKMRSQLGSEM", "down_seq": "MQTQILSTKDAELKGAREEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser404" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "769", "end_pos": "769" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" }, { "start_pos": "719", "end_pos": "719" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "623", "end_pos": "623" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8S2T0-1.401.401", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8S2T0-1.407.407", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S2T0-1.407.407", "start_pos": 407, "end_pos": 407, "uniprot_canonical_ac": "Q8S2T0-1", "length": 788, "uniprot_id": "GRIP_ARATH", "protein_name": "Protein GRIP", "refseq_ac": "NP_569025", "refseq_name": "Golgi-localized GRIP domain-containing protein", "gene_name": "ATGRIP; GRIP", "gene_names_uniprotkb": "ATGRIP; GRIP; GRIP; K2A18.10; K2A18_10", "gene_names_refseq": "ATGRIP; GRIP; K2A18.10; K2A18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QAEIEVAKMRSQLGSEMSMQ", "down_seq": "QILSTKDAELKGAREEINRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr407" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "769", "end_pos": "769" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" }, { "start_pos": "719", "end_pos": "719" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "623", "end_pos": "623" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8S2T0-1.401.401", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8S2T0-1.404.404", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S2T0-1.621.621", "start_pos": 621, "end_pos": 621, "uniprot_canonical_ac": "Q8S2T0-1", "length": 788, "uniprot_id": "GRIP_ARATH", "protein_name": "Protein GRIP", "refseq_ac": "NP_569025", "refseq_name": "Golgi-localized GRIP domain-containing protein", "gene_name": "ATGRIP; GRIP", "gene_names_uniprotkb": "ATGRIP; GRIP; GRIP; K2A18.10; K2A18_10", "gene_names_refseq": "ATGRIP; GRIP; K2A18.10; K2A18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVDEMTNLRKSMESKPVWNK", "down_seq": "PSQVHHYGNNNTESQQQDVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser621" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "769", "end_pos": "769" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" }, { "start_pos": "719", "end_pos": "719" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "623", "end_pos": "623" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8S2T0-1.623.623", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S2T0-1.623.623", "start_pos": 623, "end_pos": 623, "uniprot_canonical_ac": "Q8S2T0-1", "length": 788, "uniprot_id": "GRIP_ARATH", "protein_name": "Protein GRIP", "refseq_ac": "NP_569025", "refseq_name": "Golgi-localized GRIP domain-containing protein", "gene_name": "ATGRIP; GRIP", "gene_names_uniprotkb": "ATGRIP; GRIP; GRIP; K2A18.10; K2A18_10", "gene_names_refseq": "ATGRIP; GRIP; K2A18.10; K2A18_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S2T0", "url": "https://www.uniprot.org/uniprotkb/Q8S2T0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEMTNLRKSMESKPVWNKSP", "down_seq": "QVHHYGNNNTESQQQDVSNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8S2T0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S2T0" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser623" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "769", "end_pos": "769" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" }, { "start_pos": "719", "end_pos": "719" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "401", "end_pos": "401" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "621", "end_pos": "621" }, { "start_pos": "623", "end_pos": "623" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8S2T0-1.621.621", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L8A5-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "Q8L8A5-1", "length": 210, "uniprot_id": "GIF1_ARATH", "protein_name": "GRF1-interacting factor 1", "refseq_ac": "NP_198216", "refseq_name": "SSXT family protein", "gene_name": "AN3; GIF1", "gene_names_uniprotkb": "AN3; GIF1; AN3; ANGUSTIFOLIA 3; ATGIF1; F4I4.20; F4I4_20; GIF1; GIF; GRF1-INTERACTING FACTOR 1; GRF1-INTERACTING FACTOR", "gene_names_refseq": "AN3; ANGUSTIFOLIA 3; ARABIDOPSIS GRF1-INTERACTING FACTOR 1; ATGIF1; F4I4.20; F4I4_20; GIF1; GIF; GRF1-INTERACTING FACTOR 1; GRF1-INTERACTING FACTOR", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L8A5", "url": "https://www.uniprot.org/uniprotkb/Q8L8A5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q8L8A5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L8A5" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8L8A5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L8A5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8L8A5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L8A5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DFGRGKPEMGSGGGGEGRGG", "down_seq": "SGDGGETLYLKSSDDGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L8A5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L8A5" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8L8A5-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L8A5-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "Q8L8A5-1", "length": 210, "uniprot_id": "GIF1_ARATH", "protein_name": "GRF1-interacting factor 1", "refseq_ac": "NP_198216", "refseq_name": "SSXT family protein", "gene_name": "AN3; GIF1", "gene_names_uniprotkb": "AN3; GIF1; AN3; ANGUSTIFOLIA 3; ATGIF1; F4I4.20; F4I4_20; GIF1; GIF; GRF1-INTERACTING FACTOR 1; GRF1-INTERACTING FACTOR", "gene_names_refseq": "AN3; ANGUSTIFOLIA 3; ARABIDOPSIS GRF1-INTERACTING FACTOR 1; ATGIF1; F4I4.20; F4I4_20; GIF1; GIF; GRF1-INTERACTING FACTOR 1; GRF1-INTERACTING FACTOR", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L8A5", "url": "https://www.uniprot.org/uniprotkb/Q8L8A5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of seed maturation in Arabidopsis, rapeseed, and soybean.", "journal": "Plant physiology", "date": "2012-05", "authors": "Meyer Louis J, Gao Jianjiong, Xu Dong, Thelen Jay J", "evidence": [ { "database": "iPTMnet", "id": "Q8L8A5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L8A5" } ], "reference": [ { "type": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ] } ], "crossref": [ { "id": "Q8L8A5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L8A5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FGRGKPEMGSGGGGEGRGGS", "down_seq": "GDGGETLYLKSSDDGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L8A5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L8A5" }, { "database": "PubMed", "id": "22440515", "url": "https://glygen.org/publication/PubMed/22440515" } ], "site_lbl": "Ser194" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8L8A5-1.193.193", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WP12-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "Q0WP12-1", "length": 227, "uniprot_id": "HOL1_ARATH", "protein_name": "Thiocyanate methyltransferase 1", "refseq_ac": "NP_181919", "refseq_name": "HARMLESS TO OZONE LAYER 1", "gene_name": "HOL1", "gene_names_uniprotkb": "HOL1; ATHOL1; F6E13.4; HARMLESS TO OZONE LAYER 1", "gene_names_refseq": "ATHOL1; F6E13.4; HARMLESS TO OZONE LAYER 1; HOL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WP12", "url": "https://www.uniprot.org/uniprotkb/Q0WP12" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAEEQQNSDQSNGGNVIP", "down_seq": "PEEVATFLHKTVEEGGWEKC", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr19", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WP12-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "Q0WP12-1", "length": 227, "uniprot_id": "HOL1_ARATH", "protein_name": "Thiocyanate methyltransferase 1", "refseq_ac": "NP_181919", "refseq_name": "HARMLESS TO OZONE LAYER 1", "gene_name": "HOL1", "gene_names_uniprotkb": "HOL1; ATHOL1; F6E13.4; HARMLESS TO OZONE LAYER 1", "gene_names_refseq": "ATHOL1; F6E13.4; HARMLESS TO OZONE LAYER 1; HOL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WP12", "url": "https://www.uniprot.org/uniprotkb/Q0WP12" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVGLDISESALAKANETYGS", "down_seq": "PKAEYFSFVKEDVFTWRPTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser111" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WP12-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q0WP12-1", "length": 227, "uniprot_id": "HOL1_ARATH", "protein_name": "Thiocyanate methyltransferase 1", "refseq_ac": "NP_181919", "refseq_name": "HARMLESS TO OZONE LAYER 1", "gene_name": "HOL1", "gene_names_uniprotkb": "HOL1; ATHOL1; F6E13.4; HARMLESS TO OZONE LAYER 1", "gene_names_refseq": "ATHOL1; F6E13.4; HARMLESS TO OZONE LAYER 1; HOL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WP12", "url": "https://www.uniprot.org/uniprotkb/Q0WP12" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ITPWDQGRATPLIVHLVDTS", "down_seq": "LPLGRALVPGCGGGHDVVAM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WP12-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "Q0WP12-1", "length": 227, "uniprot_id": "HOL1_ARATH", "protein_name": "Thiocyanate methyltransferase 1", "refseq_ac": "NP_181919", "refseq_name": "HARMLESS TO OZONE LAYER 1", "gene_name": "HOL1", "gene_names_uniprotkb": "HOL1; ATHOL1; F6E13.4; HARMLESS TO OZONE LAYER 1", "gene_names_refseq": "ATHOL1; F6E13.4; HARMLESS TO OZONE LAYER 1; HOL1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WP12", "url": "https://www.uniprot.org/uniprotkb/Q0WP12" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q0WP12", "url": "https://www.uniprot.org/uniprotkb/Q0WP12" }, { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WP12", "url": "https://www.uniprot.org/uniprotkb/Q0WP12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLGRALVPGCGGGHDVVAMA", "down_seq": "PERFVVGLDISESALAKANE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WP12", "url": "https://www.uniprot.org/uniprotkb/Q0WP12" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q0WP12", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WP12" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser86" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "19", "end_pos": "19" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Acidic residues necessary for pyrophosphate-energized pumping and inhibition of the vacuolar H+-pyrophosphatase by N,N'-dicyclohexylcarbodiimide.", "journal": "The Journal of biological chemistry", "date": "1997-08-29", "authors": "Zhen R G, Kim E J, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "YVGVFMIFFAAVIFVFLGSV", "down_seq": "GFSTDNKPCTYDTTRTCKPA", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "Q", "comment": "Slight reduction of PPi hydrolysis and H(+) translocation.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Acidic residues necessary for pyrophosphate-energized pumping and inhibition of the vacuolar H+-pyrophosphatase by N,N'-dicyclohexylcarbodiimide.", "journal": "The Journal of biological chemistry", "date": "1997-08-29", "authors": "Zhen R G, Kim E J, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "LYITINVFKIYYGDDWEGLF", "down_seq": "AITGYGLGGSSMALFGRVGG", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "D", "comment": "Slight increased PPi hydrolysis and H(+) translocation.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] }, { "sequence_org": "E", "sequence_mut": "Q", "comment": "Slight reduction of PPi hydrolysis and H(+) translocation.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.305.305", "start_pos": 305, "end_pos": 305, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Acidic residues necessary for pyrophosphate-energized pumping and inhibition of the vacuolar H+-pyrophosphatase by N,N'-dicyclohexylcarbodiimide.", "journal": "The Journal of biological chemistry", "date": "1997-08-29", "authors": "Zhen R G, Kim E J, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "VGDNVGDIAGMGSDLFGSYA", "down_seq": "ASCAALVVASISSFGINHDF", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "D", "comment": "Abolishes H(+) translocation and strong reduction of PPi hydrolysis.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] }, { "sequence_org": "E", "sequence_mut": "Q", "comment": "Abolishes H(+) translocation and strong reduction of PPi hydrolysis, reduced sensitivity to DCCD.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.427.427", "start_pos": 427, "end_pos": 427, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Acidic residues necessary for pyrophosphate-energized pumping and inhibition of the vacuolar H+-pyrophosphatase by N,N'-dicyclohexylcarbodiimide.", "journal": "The Journal of biological chemistry", "date": "1997-08-29", "authors": "Zhen R G, Kim E J, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "QLFLCVCVGLWAGLIIGFVT", "down_seq": "YYTSNAYSPVQDVADSCRTG", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "D", "comment": "Increases H(+) translocation, normal PPi hydrolysis.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] }, { "sequence_org": "E", "sequence_mut": "Q", "comment": "Strong reduction of PPi hydrolysis and H(+) translocation.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.504.504", "start_pos": 504, "end_pos": 504, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Acidic residues necessary for pyrophosphate-energized pumping and inhibition of the vacuolar H+-pyrophosphatase by N,N'-dicyclohexylcarbodiimide.", "journal": "The Journal of biological chemistry", "date": "1997-08-29", "authors": "Zhen R G, Kim E J, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "YGVAVAALGMLSTIATGLAI", "down_seq": "AYGPISDNAGGIAEMAGMSH", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "E", "comment": "Abolishes H(+) translocation and strong reduction of PPi hydrolysis.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] }, { "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes H(+) translocation and strong reduction of PPi hydrolysis, reduced sensitivity to DCCD.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.573.573", "start_pos": 573, "end_pos": 573, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Acidic residues necessary for pyrophosphate-energized pumping and inhibition of the vacuolar H+-pyrophosphatase by N,N'-dicyclohexylcarbodiimide.", "journal": "The Journal of biological chemistry", "date": "1997-08-29", "authors": "Zhen R G, Kim E J, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "ALVSLALFGAFVSRAGIHTV", "down_seq": "VLTPKVIIGLLVGAMLPYWF", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Increases H(+) translocation, normal PPi hydrolysis.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P31414-1.576.576", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.634.634", "start_pos": 634, "end_pos": 634, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-directed mutagenesis of vacuolar H(+)-pyrophosphatase. Necessity of Cys634 for inhibition by maleimides but not catalysis.", "journal": "The Journal of biological chemistry", "date": "1995-02-10", "authors": "Kim E J, Zhen R G, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "7852329", "url": "https://glygen.org/publication/PubMed/7852329" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7852329", "url": "https://glygen.org/publication/PubMed/7852329", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "RQFNTIPGLMEGTAKPDYAT", "down_seq": "VKISTDASIKEMIPPGCLVM", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Reduced sensitivity to NEM.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "7852329", "url": "https://glygen.org/publication/PubMed/7852329" } ] }, { "sequence_org": "C", "sequence_mut": "S", "comment": "Reduced sensitivity to NEM.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "7852329", "url": "https://glygen.org/publication/PubMed/7852329" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P31414-1.618.618", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31414-1.633.633", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.667.667", "start_pos": 667, "end_pos": 667, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Acidic residues necessary for pyrophosphate-energized pumping and inhibition of the vacuolar H+-pyrophosphatase by N,N'-dicyclohexylcarbodiimide.", "journal": "The Journal of biological chemistry", "date": "1997-08-29", "authors": "Zhen R G, Kim E J, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "IPPGCLVMLTPLIVGFFFGV", "down_seq": "TLSGVLAGSLVSGVQIAISA", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "Q", "comment": "Slight reduction of PPi hydrolysis and H(+) translocation.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.751.751", "start_pos": 751, "end_pos": 751, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Acidic residues necessary for pyrophosphate-energized pumping and inhibition of the vacuolar H+-pyrophosphatase by N,N'-dicyclohexylcarbodiimide.", "journal": "The Journal of biological chemistry", "date": "1997-08-29", "authors": "Zhen R G, Kim E J, Rea P A", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "reference": [ { "type": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "crossref": [ { "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "DPLKDTSGPSLNILIKLMAV", "down_seq": "SLVFAPFFATHGGILFKYF", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "Q", "comment": "Slight reduction of PPi hydrolysis and H(+) translocation.", "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" }, { "database": "PubMed", "id": "9268385", "url": "https://glygen.org/publication/PubMed/9268385" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1).", "journal": "Frontiers in plant science", "date": "2017", "authors": "Pizzio Gaston A, Hirschi Kendal D, Gaxiola Roberto A", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ] } ], "crossref": [ { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TSVLSGFLGMKIATYANART", "down_seq": "LEARKGVGKAFIVAFRSGAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ], "site_lbl": "Thr176" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.252.252", "start_pos": 252, "end_pos": 252, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1).", "journal": "Frontiers in plant science", "date": "2017", "authors": "Pizzio Gaston A, Hirschi Kendal D, Gaxiola Roberto A", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ] } ], "crossref": [ { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TGYGLGGSSMALFGRVGGGI", "down_seq": "TKAADVGADLVGKIERNIPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ], "site_lbl": "Tyr252" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P31414-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1).", "journal": "Frontiers in plant science", "date": "2017", "authors": "Pizzio Gaston A, Hirschi Kendal D, Gaxiola Roberto A", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ] } ], "crossref": [ { "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSLFQWYVVSRVKLTSDLGA", "down_seq": "SSGGANNGKNGYGDYLIEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ], "site_lbl": "Ser46" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P31414-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31414-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P31414-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1).", "journal": "Frontiers in plant science", "date": "2017", "authors": "Pizzio Gaston A, Hirschi Kendal D, Gaxiola Roberto A", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ] } ], "crossref": [ { "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLFQWYVVSRVKLTSDLGAS", "down_seq": "SGGANNGKNGYGDYLIEEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P31414-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31414-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P31414-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1).", "journal": "Frontiers in plant science", "date": "2017", "authors": "Pizzio Gaston A, Hirschi Kendal D, Gaxiola Roberto A", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ] } ], "crossref": [ { "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LFQWYVVSRVKLTSDLGASS", "down_seq": "GGANNGKNGYGDYLIEEEEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8MQH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8MQH1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ], "site_lbl": "Ser48" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P31414-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31414-1.47.47", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.576.576", "start_pos": 576, "end_pos": 576, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1).", "journal": "Frontiers in plant science", "date": "2017", "authors": "Pizzio Gaston A, Hirschi Kendal D, Gaxiola Roberto A", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ] } ], "crossref": [ { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SLALFGAFVSRAGIHTVDVL", "down_seq": "PKVIIGLLVGAMLPYWFSAM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ], "site_lbl": "Thr576" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P31414-1.573.573", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.618.618", "start_pos": 618, "end_pos": 618, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P31414-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414-1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MKSVGSAALKMVEEVRRQFN", "down_seq": "IPGLMEGTAKPDYATCVKIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr618" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "P31414-1.633.633", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31414-1.634.634", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.633.633", "start_pos": 633, "end_pos": 633, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "P31414-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414-1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1).", "journal": "Frontiers in plant science", "date": "2017", "authors": "Pizzio Gaston A, Hirschi Kendal D, Gaxiola Roberto A", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ] } ], "crossref": [ { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RRQFNTIPGLMEGTAKPDYA", "down_seq": "CVKISTDASIKEMIPPGCLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ], "site_lbl": "Thr633" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P31414-1.618.618", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31414-1.634.634", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31414-1.700.700", "start_pos": 700, "end_pos": 700, "uniprot_canonical_ac": "P31414-1", "length": 770, "uniprot_id": "AVP1_ARATH", "protein_name": "Pyrophosphate-energized vacuolar membrane proton pump 1", "refseq_ac": "NP_173021", "refseq_name": "Inorganic H pyrophosphatase family protein", "gene_name": "AVP1", "gene_names_uniprotkb": "AVP1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP3; AVP; AtAVP1; AtVHP1:1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VHP1", "gene_names_refseq": "1; ARABIDOPSIS THALIANA V-PPASE 3; ATAVP3; AVP-3; AVP1; AtAVP1; AtVHP1; F7H2.3; F7H2_3; FUGU 5; FUGU5; VACUOLAR H+ - PYROPHOSPHATASE AVP-3; VHP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31414", "url": "https://www.uniprot.org/uniprotkb/P31414" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1).", "journal": "Frontiers in plant science", "date": "2017", "authors": "Pizzio Gaston A, Hirschi Kendal D, Gaxiola Roberto A", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" } ], "reference": [ { "type": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ] } ], "crossref": [ { "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GVQIAISASNTGGAWDNAKK", "down_seq": "IEAGVSEHAKSLGPKGSEPH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31414", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31414" }, { "database": "PubMed", "id": "28955362", "url": "https://glygen.org/publication/PubMed/28955362" } ], "site_lbl": "Tyr700" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "634", "end_pos": "634" }, { "start_pos": "667", "end_pos": "667" }, { "start_pos": "751", "end_pos": "751" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "618", "end_pos": "618" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "700", "end_pos": "700" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" }, { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLLIEKDDLKDVAAAKVKKI", "down_seq": "AELQAASSSDSKSFDPVERI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "site_lbl": "Thr107" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P42737-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P42737-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P42737-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P42737-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P42737-1.120.120", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLKDVAAAKVKKITAELQAA", "down_seq": "SSDSKSFDPVERIKEGFVTF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser114" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P42737-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P42737-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P42737-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P42737-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P42737-1.120.120", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P42737-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.115.115", "start_pos": 115, "end_pos": 115, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKDVAAAKVKKITAELQAAS", "down_seq": "SDSKSFDPVERIKEGFVTFK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser115" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P42737-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P42737-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P42737-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P42737-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P42737-1.120.120", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P42737-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDVAAAKVKKITAELQAASS", "down_seq": "DSKSFDPVERIKEGFVTFKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser116" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P42737-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P42737-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P42737-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P42737-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P42737-1.120.120", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P42737-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VAAAKVKKITAELQAASSSD", "down_seq": "KSFDPVERIKEGFVTFKKEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser118" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P42737-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P42737-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P42737-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P42737-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P42737-1.120.120", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P42737-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAKVKKITAELQAASSSDSK", "down_seq": "FDPVERIKEGFVTFKKEKYE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser120" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P42737-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P42737-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P42737-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P42737-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P42737-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P42737-1.133.133", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ASSSDSKSFDPVERIKEGFV", "down_seq": "FKKEKYETNPALYGELAKGQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr133" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P42737-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P42737-1.115.115", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P42737-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P42737-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P42737-1.120.120", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FKKEKYETNPALYGELAKGQ", "down_seq": "PKYMVFACSDSRVCPSHVLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ], "site_lbl": "Ser154" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "P42737-1.170.170", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" }, { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKGQSPKYMVFACSDSRVCP", "down_seq": "HVLDFHPGDAFVVRNIANMV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "site_lbl": "Ser170" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P42737-1.154.154", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.198.198", "start_pos": 198, "end_pos": 198, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Aryal Uma K, Krochko Joan E, Ross Andrew R S", "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" }, { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" } ] } ], "crossref": [ { "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDAFVVRNIANMVPPFDKVK", "down_seq": "AGVGAAIEYAVLHLKVENIV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" }, { "database": "PubMed", "id": "22092075", "url": "https://glygen.org/publication/PubMed/22092075" }, { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "site_lbl": "Tyr198" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.263.263", "start_pos": 263, "end_pos": 263, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DFIEDWVKICLPAKSKVLAE", "down_seq": "ESSAFEDQCGRCEREAVNVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser263" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P42737-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P42737-1.266.266", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" }, { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IEDWVKICLPAKSKVLAESE", "down_seq": "SAFEDQCGRCEREAVNVSLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser265" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P42737-1.263.263", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P42737-1.266.266", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.266.266", "start_pos": 266, "end_pos": 266, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDWVKICLPAKSKVLAESES", "down_seq": "AFEDQCGRCEREAVNVSLAN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser266" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P42737-1.263.263", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P42737-1.265.265", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" }, { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CFRCTCFSHFKLELRRMGNE", "down_seq": "YEDAIEALKKLLIEKDDLKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P42737-1.78.78", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P42737-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "P42737-1", "length": 331, "uniprot_id": "BCA2_ARATH", "protein_name": "Beta carbonic anhydrase 2, chloroplastic", "refseq_ac": "NP_001330235", "refseq_name": "carbonic anhydrase 2", "gene_name": "BCA2; CA2", "gene_names_uniprotkb": "BCA2; CA2; BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "gene_names_refseq": "BETA CA2; BETA CARBONIC ANHYDRASE 2; CA18; CA2; CARBONIC ANHYDRASE 18; CARBONIC ANHYDRASE 2; T9L3.40; T9L3_40; carbonic anhydrase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42737", "url": "https://www.uniprot.org/uniprotkb/P42737" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "FRCTCFSHFKLELRRMGNES", "down_seq": "EDAIEALKKLLIEKDDLKDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P42737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42737" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr78" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P42737-1.77.77", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9SSA8-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "Q9SSA8-1", "length": 358, "uniprot_id": "RA212_ARATH", "protein_name": "Ethylene-responsive transcription factor RAP2-12", "refseq_ac": "NP_001031185", "refseq_name": "uncharacterized protein", "gene_name": "RAP2-12; RAP212", "gene_names_uniprotkb": "RAP2-12; RAP212; ERF074; RAP2.12; T18A20.14; T18A20_14; related to AP2 12", "gene_names_refseq": "RAP2.12; T18A20.14; T18A20_14; related to AP2 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SSA8", "url": "https://www.uniprot.org/uniprotkb/Q9SSA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway.", "journal": "Nature communications", "date": "2014-03-06", "authors": "Weits Daan A, Giuntoli Beatrice, Kosmacz Monika, Parlanti Sandro, Hubberten Hans-Michael, Riegler Heike, Hoefgen Rainer, Perata Pierdomenico, van Dongen Joost T, Licausi Francesco", "evidence": [ { "database": "UniProtKB", "id": "Q9SSA8", "url": "https://www.uniprot.org/uniprotkb/Q9SSA8" } ], "reference": [ { "type": "PubMed", "id": "24599061", "url": "https://glygen.org/publication/PubMed/24599061" } ] }, { "title": "Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.", "journal": "Nature", "date": "2011-10-23", "authors": "Licausi Francesco, Kosmacz Monika, Weits Daan A, Giuntoli Beatrice, Giorgi Federico M, Voesenek Laurentius A C J, Perata Pierdomenico, van Dongen Joost T", "evidence": [ { "database": "UniProtKB", "id": "Q9SSA8", "url": "https://www.uniprot.org/uniprotkb/Q9SSA8" } ], "reference": [ { "type": "PubMed", "id": "22020282", "url": "https://glygen.org/publication/PubMed/22020282" } ] } ], "crossref": [ { "id": "Q9SSA8", "url": "https://www.uniprot.org/uniprotkb/Q9SSA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24599061", "url": "https://glygen.org/publication/PubMed/24599061", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22020282", "url": "https://glygen.org/publication/PubMed/22020282", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "M", "down_seq": "GGAIISDFIPPPRSRRVTSE", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Increased lifetime of the protein and accumulation in the nucleus.", "evidence": [ { "database": "UniProtKB", "id": "Q9SSA8", "url": "https://www.uniprot.org/uniprotkb/Q9SSA8" }, { "database": "PubMed", "id": "24599061", "url": "https://glygen.org/publication/PubMed/24599061" }, { "database": "PubMed", "id": "22020282", "url": "https://glygen.org/publication/PubMed/22020282" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LRR9-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "Q9LRR9-1", "length": 367, "uniprot_id": "GLO1_ARATH", "protein_name": "Glycolate oxidase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "GLO1; GOX1", "gene_names_uniprotkb": "GLO1; GOX1; MAO2.2; glycolate oxidase 1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LRR9", "url": "https://www.uniprot.org/uniprotkb/Q9LRR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NVVEQLVRRAERAGFKAIAL", "down_seq": "VDTPRLGRRESDIKNRFTLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Thr155" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9LRR9-1.158.158", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LRR9-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "Q9LRR9-1", "length": 367, "uniprot_id": "GLO1_ARATH", "protein_name": "Glycolate oxidase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "GLO1; GOX1", "gene_names_uniprotkb": "GLO1; GOX1; MAO2.2; glycolate oxidase 1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LRR9", "url": "https://www.uniprot.org/uniprotkb/Q9LRR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EQLVRRAERAGFKAIALTVD", "down_seq": "PRLGRRESDIKNRFTLPPNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr158" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9LRR9-1.155.155", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LRR9-1.355.355", "start_pos": 355, "end_pos": 355, "uniprot_canonical_ac": "Q9LRR9-1", "length": 367, "uniprot_id": "GLO1_ARATH", "protein_name": "Glycolate oxidase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "GLO1; GOX1", "gene_names_uniprotkb": "GLO1; GOX1; MAO2.2; glycolate oxidase 1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LRR9", "url": "https://www.uniprot.org/uniprotkb/Q9LRR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ELTMALSGCRSLKEISRNHI", "down_seq": "TEWDTPRPSARL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr355" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LRR9-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q9LRR9-1", "length": 367, "uniprot_id": "GLO1_ARATH", "protein_name": "Glycolate oxidase 1", "refseq_ac": "", "refseq_name": "", "gene_name": "GLO1; GOX1", "gene_names_uniprotkb": "GLO1; GOX1; MAO2.2; glycolate oxidase 1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LRR9", "url": "https://www.uniprot.org/uniprotkb/Q9LRR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MEI", "down_seq": "NVTEYDAIAKQKLPKMVYDY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LRR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LRR9" } ], "site_lbl": "Thr4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "155", "end_pos": "155" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93025-1.305.305", "start_pos": 305, "end_pos": 305, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QVQESVSNDTMVKPDSSTTP", "down_seq": "PGRQTRQSDEASKSFRTPGR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr305", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Thr305" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P93025-1.289.289", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P93025-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P93025-1.294.294", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P93025-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93025-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93025-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93025-1.303.303", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P93025-1.313.313", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P93025-1.319.319", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P93025-1.322.322", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-10", "authors": "Christie John M, Swartz Trevor E, Bogomolni Roberto A, Briggs Winslow R", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "reference": [ { "type": "PubMed", "id": "12383086", "url": "https://glygen.org/publication/PubMed/12383086" } ] } ], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12383086", "url": "https://glygen.org/publication/PubMed/12383086", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "ASSGFFTMTGYSSKEIVGRN", "down_seq": "RFLQGPDTDKNEVAKIRDCV", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on light-dependent autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "12383086", "url": "https://glygen.org/publication/PubMed/12383086" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2.", "journal": "Journal of molecular biology", "date": "2008-09-05", "authors": "Nakasako Masayoshi, Zikihara Kazunori, Matsuoka Daisuke, Katsura Hitomi, Tokutomi Satoru", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "reference": [ { "type": "PubMed", "id": "18585389", "url": "https://glygen.org/publication/PubMed/18585389" } ] } ], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18585389", "url": "https://glygen.org/publication/PubMed/18585389", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CGRLLNYKKDGTPFWNLLTV", "down_seq": "PIKDDQGNTIKFIGMQVEVS", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "Q", "comment": "Loss of dimerization.", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "18585389", "url": "https://glygen.org/publication/PubMed/18585389" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "P93025-1.232.232", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2.", "journal": "Journal of molecular biology", "date": "2008-09-05", "authors": "Nakasako Masayoshi, Zikihara Kazunori, Matsuoka Daisuke, Katsura Hitomi, Tokutomi Satoru", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "reference": [ { "type": "PubMed", "id": "18585389", "url": "https://glygen.org/publication/PubMed/18585389" } ] } ], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18585389", "url": "https://glygen.org/publication/PubMed/18585389", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "NLLTVTPIKDDQGNTIKFIG", "down_seq": "QVEVSKYTEGVNDKALRPNG", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "V", "comment": "Loss of dimerization.", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "18585389", "url": "https://glygen.org/publication/PubMed/18585389" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P93025-1.217.217", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.392.392", "start_pos": 392, "end_pos": 392, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteins.", "journal": "The Journal of biological chemistry", "date": "2021", "authors": "R\u00f6llen Katrin, Granzin Joachim, Remeeva Alina, Davari Mehdi D, Gensch Thomas, Nazarenko Vera V, Kovalev Kirill, Bogorodskiy Andrey, Borshchevskiy Valentin, Hemmer Stefanie, Schwaneberg Ulrich, Gordeliy Valentin, Jaeger Karl-Erich, Batra-Safferling Renu, Gushchin Ivan, Krauss Ulrich", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "reference": [ { "type": "PubMed", "id": "33862085", "url": "https://glygen.org/publication/PubMed/33862085" } ] } ], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33862085", "url": "https://glygen.org/publication/PubMed/33862085", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "RDIRQGIDLATTLERIEKNF", "down_seq": "ISDPRLPDNPIIFASDSFLE", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "T", "comment": "Red-shifted emitted light fluorescence (502 nm) but normal absorption (maximum at 447 nm); when associated with K-489.", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "33862085", "url": "https://glygen.org/publication/PubMed/33862085" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function.", "journal": "The Plant journal : for cell and molecular biology", "date": "2002-10", "authors": "Christie John M, Swartz Trevor E, Bogomolni Roberto A, Briggs Winslow R", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "reference": [ { "type": "PubMed", "id": "12383086", "url": "https://glygen.org/publication/PubMed/12383086" } ] }, { "title": "Structural tuning of the fluorescent protein iLOV for improved photostability.", "journal": "The Journal of biological chemistry", "date": "2012-06-22", "authors": "Christie John M, Hitomi Kenichi, Arvai Andrew S, Hartfield Kimberly A, Mettlen Marcel, Pratt Ashley J, Tainer John A, Getzoff Elizabeth D", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "reference": [ { "type": "PubMed", "id": "22573334", "url": "https://glygen.org/publication/PubMed/22573334" } ] } ], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12383086", "url": "https://glygen.org/publication/PubMed/12383086", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22573334", "url": "https://glygen.org/publication/PubMed/22573334", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "ASDSFLELTEYSREEILGRN", "down_seq": "RFLQGPETDQATVQKIRDAI", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Severe loss of light-sensing and light-dependent autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "12383086", "url": "https://glygen.org/publication/PubMed/12383086" }, { "database": "PubMed", "id": "22573334", "url": "https://glygen.org/publication/PubMed/22573334" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.489.489", "start_pos": 489, "end_pos": 489, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteins.", "journal": "The Journal of biological chemistry", "date": "2021", "authors": "R\u00f6llen Katrin, Granzin Joachim, Remeeva Alina, Davari Mehdi D, Gensch Thomas, Nazarenko Vera V, Kovalev Kirill, Bogorodskiy Andrey, Borshchevskiy Valentin, Hemmer Stefanie, Schwaneberg Ulrich, Gordeliy Valentin, Jaeger Karl-Erich, Batra-Safferling Renu, Gushchin Ivan, Krauss Ulrich", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "reference": [ { "type": "PubMed", "id": "33862085", "url": "https://glygen.org/publication/PubMed/33862085" } ] } ], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "33862085", "url": "https://glygen.org/publication/PubMed/33862085", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "LFHLQPMRDQKGELQYFIGV", "down_seq": "LDGSDHVEPLQNRLSERTEM", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "K", "comment": "Blue-shifted light absorption (maximum at 441 nm) and emitted fluorescence (487 nm). Red-shifted light emitted fluorescence (502 nm) but normal absorption (maximum at 447 nm); when associated with T-392.", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "33862085", "url": "https://glygen.org/publication/PubMed/33862085" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.727.727", "start_pos": 727, "end_pos": 727, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis NPL1: a phototropin homolog controlling the chloroplast high-light avoidance response.", "journal": "Science (New York, N.Y.)", "date": "2001-03-16", "authors": "Kagawa T, Sakai T, Suetsugu N, Oikawa K, Ishiguro S, Kato T, Tabata S, Okada K, Wada M", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "reference": [ { "type": "PubMed", "id": "11251116", "url": "https://glygen.org/publication/PubMed/11251116" } ] } ], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11251116", "url": "https://glygen.org/publication/PubMed/11251116", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NILLKKDGHIVLADFDLSFM", "down_seq": "TCTPQLIIPAAPSKRRRSKS", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "In cav1-2; loss of chloroplast avoidance response in response to high fluence blue light.", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "11251116", "url": "https://glygen.org/publication/PubMed/11251116" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGISFKLSSEVERSKNMSRR", "down_seq": "SEESTSSESGAFPRVSQELK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser105" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P93025-1.88.88", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P93025-1.98.98", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P93025-1.106.106", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93025-1.109.109", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P93025-1.110.110", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P93025-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P93025-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P93025-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P93025-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GISFKLSSEVERSKNMSRRS", "down_seq": "EESTSSESGAFPRVSQELKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser106" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P93025-1.88.88", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P93025-1.98.98", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P93025-1.105.105", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P93025-1.109.109", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93025-1.110.110", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P93025-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P93025-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P93025-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P93025-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FKLSSEVERSKNMSRRSSEE", "down_seq": "TSSESGAFPRVSQELKTALS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser109" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P93025-1.98.98", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93025-1.105.105", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93025-1.106.106", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P93025-1.110.110", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P93025-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P93025-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P93025-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P93025-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.110.110", "start_pos": 110, "end_pos": 110, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLSSEVERSKNMSRRSSEES", "down_seq": "SSESGAFPRVSQELKTALST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr110" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P93025-1.98.98", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P93025-1.105.105", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93025-1.106.106", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P93025-1.109.109", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P93025-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P93025-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93025-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P93025-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSSEVERSKNMSRRSSEEST", "down_seq": "SESGAFPRVSQELKTALSTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser111" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P93025-1.98.98", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P93025-1.105.105", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P93025-1.106.106", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93025-1.109.109", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P93025-1.110.110", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P93025-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P93025-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P93025-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSEVERSKNMSRRSSEESTS", "down_seq": "ESGAFPRVSQELKTALSTLQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser112" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P93025-1.98.98", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P93025-1.105.105", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P93025-1.106.106", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93025-1.109.109", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93025-1.110.110", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P93025-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P93025-1.114.114", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P93025-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVERSKNMSRRSSEESTSSE", "down_seq": "GAFPRVSQELKTALSTLQQT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser114" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P93025-1.98.98", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P93025-1.105.105", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P93025-1.106.106", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P93025-1.109.109", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93025-1.110.110", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93025-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93025-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P93025-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSRRSSEESTSSESGAFPRV", "down_seq": "QELKTALSTLQQTFVVSDAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "site_lbl": "Ser121" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P93025-1.105.105", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P93025-1.106.106", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P93025-1.109.109", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P93025-1.110.110", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P93025-1.111.111", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P93025-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P93025-1.114.114", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93025-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MERPRAPPSPLNDAE", "down_seq": "LSERRSLEIFNPSSGKETHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P93025-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P93025-1.18.18", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P93025-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P93025-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P93025-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MERPRAPPSPLNDAESL", "down_seq": "ERRSLEIFNPSSGKETHGST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser18" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P93025-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P93025-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P93025-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P93025-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P93025-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERPRAPPSPLNDAESLSERR", "down_seq": "LEIFNPSSGKETHGSTSSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P93025-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P93025-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P93025-1.18.18", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P93025-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P93025-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93025-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "P93025-1", "length": 915, "uniprot_id": "PHOT2_ARATH", "protein_name": "Phototropin-2", "refseq_ac": "NP_001318824", "refseq_name": "phototropin 2", "gene_name": "PHOT2", "gene_names_uniprotkb": "PHOT2; AtPHOT2; CAV1; K21L19.6; K21L19_6; KIN7; NPL1; phototropin 2", "gene_names_refseq": "AtPHOT2; K21L19.6; K21L19_6; NON PHOTOTROPIC HYPOCOTYL 1-LIKE; NPL1; PHOT2; phototropin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "iPTMnet", "id": "P93025-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKEKALDSITEVVQTIRHRK", "down_seq": "QVQESVSNDTMVKPDSSTTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93025", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93025" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser284" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "305", "end_pos": "305" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "727", "end_pos": "727" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "109", "end_pos": "109" }, { "start_pos": "110", "end_pos": "110" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "300", "end_pos": "300" }, { "start_pos": "301", "end_pos": "301" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "761", "end_pos": "761" }, { "start_pos": "763", "end_pos": "763" }, { "start_pos": "885", "end_pos": "885" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "98", "end_pos": "98" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P93025-1.289.289", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P93025-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P93025-1.294.294", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P93025-1.300.300", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P93025-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P93025-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P93025-1.303.303", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] } ]